From user-return-8371-archive-asf-public=cust-asf.ponee.io@uima.apache.org Tue Jul 14 09:27:45 2020 Return-Path: X-Original-To: archive-asf-public@cust-asf.ponee.io Delivered-To: archive-asf-public@cust-asf.ponee.io Received: from mail.apache.org (hermes.apache.org [207.244.88.153]) by mx-eu-01.ponee.io (Postfix) with SMTP id 2577418064D for ; Tue, 14 Jul 2020 11:27:45 +0200 (CEST) Received: (qmail 75865 invoked by uid 500); 14 Jul 2020 09:27:44 -0000 Mailing-List: contact user-help@uima.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@uima.apache.org Delivered-To: mailing list user@uima.apache.org Delivered-To: moderator for user@uima.apache.org Received: (qmail 59973 invoked by uid 99); 13 Jul 2020 10:25:13 -0000 X-Virus-Scanned: Debian amavisd-new at spamd1-us-west.apache.org X-Spam-Flag: NO X-Spam-Score: -2.288 X-Spam-Level: X-Spam-Status: No, score=-2.288 tagged_above=-999 required=6.31 tests=[KAM_DMARC_STATUS=0.01, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001] autolearn=disabled Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=134.2.5.214; helo=mx04.uni-tuebingen.de; envelope-from=bjoern.rudzewitz@uni-tuebingen.de; receiver= To: user@uima.apache.org From: =?UTF-8?Q?Bj=c3=b6rn_Rudzewitz?= Subject: RUTA problem with extended DKPro Type System Message-ID: <390fea07-47b7-cab7-8bc5-ad7e46980c00@uni-tuebingen.de> Date: Mon, 13 Jul 2020 12:25:02 +0200 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:68.0) Gecko/20100101 Thunderbird/68.10.0 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: 8bit Content-Language: en-US Dear all, I want use RUTA to develop rules to extend the output of a UIMA pipeline. The original pipeline is defined in another project and uses a type system that extends the DKPro type system by importing certain types from it, but it also has custom types that are not available in DKPro. I already exported a merged type system that does not contain import statements/references to external type systems and put that into the descriptor/ folder of my RUTA project (which is in the build path). In the input/ folder of my RUTA project, I put some XMI files that I exported from the original pipeline. In order to test the approach, I wrote a simple RUTA script with one rule (supposed to mark ): TYPESYSTEM DidiTypeSystem; Token{REGEXP("...er") -> MARK(CompAdv)}; The problem is when I run this RUTA script and select one of the generated XMIs in the output folder, I get an error message that I can not interpret (see below at the end of the mail). It seems to be the case that it can not find the DocumentMetaData type from DKPro, but I checked and it is present in the type system. I also used the org.apache.uima.tools.AnnotationViewerMain tool outside of RUTA to double-check and the DocumentMetaData annotation is definitely present in the document and annotated on the netire source text. I would be very gratefule for any hints as to what I could do to overcome the error. Best regards, Björn Rudzewitz org.apache.uima.UIMARuntimeException     at org.apache.uima.util.CasIOUtils.load(CasIOUtils.java:368)     at org.apache.uima.util.CasIOUtils.load(CasIOUtils.java:312)     at org.apache.uima.util.CasIOUtils.load(CasIOUtils.java:193)     at org.apache.uima.util.CasIOUtils.load(CasIOUtils.java:218)     at org.apache.uima.caseditor.editor.DocumentUimaImpl.setContent(DocumentUimaImpl.java:291)     at org.apache.uima.caseditor.editor.DocumentUimaImpl.(DocumentUimaImpl.java:105)     at org.apache.uima.caseditor.ide.DefaultCasDocumentProvider.createDocument(DefaultCasDocumentProvider.java:405)     at org.apache.uima.caseditor.editor.TextDocumentProvider.createDocument(TextDocumentProvider.java:103)     at org.eclipse.ui.texteditor.AbstractDocumentProvider.createElementInfo(AbstractDocumentProvider.java:330)     at org.apache.uima.caseditor.editor.TextDocumentProvider.createElementInfo(TextDocumentProvider.java:135)     at org.eclipse.ui.texteditor.AbstractDocumentProvider.connect(AbstractDocumentProvider.java:395)     at org.eclipse.ui.texteditor.AbstractTextEditor.doSetInput(AbstractTextEditor.java:4212)     at org.eclipse.ui.texteditor.StatusTextEditor.doSetInput(StatusTextEditor.java:260)     at org.apache.uima.caseditor.editor.AnnotationEditor.doSetInput(AnnotationEditor.java:924)     at org.eclipse.ui.texteditor.AbstractTextEditor.lambda$1(AbstractTextEditor.java:3179)     at org.eclipse.jface.operation.ModalContext.runInCurrentThread(ModalContext.java:436)     at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:352)     at org.eclipse.ui.internal.WorkbenchWindow.lambda$5(WorkbenchWindow.java:2419)     at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:72)     at org.eclipse.ui.internal.WorkbenchWindow.run(WorkbenchWindow.java:2417)     at org.eclipse.ui.texteditor.AbstractTextEditor.internalInit(AbstractTextEditor.java:3196)     at org.eclipse.ui.texteditor.AbstractTextEditor.init(AbstractTextEditor.java:3221)     at org.apache.uima.caseditor.editor.AnnotationEditor.init(AnnotationEditor.java:667)     at org.eclipse.ui.internal.EditorReference.initialize(EditorReference.java:353)     at org.eclipse.ui.internal.e4.compatibility.CompatibilityPart.create(CompatibilityPart.java:340)     at jdk.internal.reflect.GeneratedMethodAccessor87.invoke(Unknown Source)     at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)     at java.base/java.lang.reflect.Method.invoke(Method.java:566)     at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:58)     at org.eclipse.e4.core.internal.di.InjectorImpl.processAnnotated(InjectorImpl.java:1002)     at org.eclipse.e4.core.internal.di.InjectorImpl.processAnnotated(InjectorImpl.java:967)     at org.eclipse.e4.core.internal.di.InjectorImpl.internalInject(InjectorImpl.java:139)     at org.eclipse.e4.core.internal.di.InjectorImpl.internalMake(InjectorImpl.java:408)     at org.eclipse.e4.core.internal.di.InjectorImpl.make(InjectorImpl.java:331)     at org.eclipse.e4.core.contexts.ContextInjectionFactory.make(ContextInjectionFactory.java:202)     at org.eclipse.e4.ui.internal.workbench.ReflectionContributionFactory.createFromBundle(ReflectionContributionFactory.java:91)     at org.eclipse.e4.ui.internal.workbench.ReflectionContributionFactory.doCreate(ReflectionContributionFactory.java:60)     at org.eclipse.e4.ui.internal.workbench.ReflectionContributionFactory.create(ReflectionContributionFactory.java:42)     at org.eclipse.e4.ui.workbench.renderers.swt.ContributedPartRenderer.createWidget(ContributedPartRenderer.java:132)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.createWidget(PartRenderingEngine.java:1002)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.safeCreateGui(PartRenderingEngine.java:662)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.safeCreateGui(PartRenderingEngine.java:768)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.access$0(PartRenderingEngine.java:739)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$2.run(PartRenderingEngine.java:733)     at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:45)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.createGui(PartRenderingEngine.java:717)     at org.eclipse.e4.ui.workbench.renderers.swt.StackRenderer.showTab(StackRenderer.java:1297)     at org.eclipse.e4.ui.workbench.renderers.swt.LazyStackRenderer.lambda$0(LazyStackRenderer.java:75)     at org.eclipse.e4.ui.services.internal.events.UIEventHandler.lambda$0(UIEventHandler.java:38)     at org.eclipse.swt.widgets.Synchronizer.syncExec(Synchronizer.java:236)     at org.eclipse.ui.internal.UISynchronizer.syncExec(UISynchronizer.java:146)     at org.eclipse.swt.widgets.Display.syncExec(Display.java:5786)     at org.eclipse.e4.ui.internal.workbench.swt.E4Application$1.syncExec(E4Application.java:219)     at org.eclipse.e4.ui.services.internal.events.UIEventHandler.handleEvent(UIEventHandler.java:38)     at org.eclipse.equinox.internal.event.EventHandlerWrapper.handleEvent(EventHandlerWrapper.java:205)     at org.eclipse.equinox.internal.event.EventHandlerTracker.dispatchEvent(EventHandlerTracker.java:203)     at org.eclipse.equinox.internal.event.EventHandlerTracker.dispatchEvent(EventHandlerTracker.java:1)     at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:234)     at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:151)     at org.eclipse.equinox.internal.event.EventAdminImpl.dispatchEvent(EventAdminImpl.java:132)     at org.eclipse.equinox.internal.event.EventAdminImpl.sendEvent(EventAdminImpl.java:75)     at org.eclipse.equinox.internal.event.EventComponent.sendEvent(EventComponent.java:44)     at org.eclipse.e4.ui.services.internal.events.EventBroker.send(EventBroker.java:55)     at org.eclipse.e4.ui.internal.workbench.UIEventPublisher.notifyChanged(UIEventPublisher.java:63)     at org.eclipse.emf.common.notify.impl.BasicNotifierImpl.eNotify(BasicNotifierImpl.java:424)     at org.eclipse.e4.ui.model.application.ui.impl.ElementContainerImpl.setSelectedElementGen(ElementContainerImpl.java:170)     at org.eclipse.e4.ui.model.application.ui.impl.ElementContainerImpl.setSelectedElement(ElementContainerImpl.java:188)     at org.eclipse.e4.ui.internal.workbench.ModelServiceImpl.showElementInWindow(ModelServiceImpl.java:661)     at org.eclipse.e4.ui.internal.workbench.ModelServiceImpl.bringToTop(ModelServiceImpl.java:625)     at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.delegateBringToTop(PartServiceImpl.java:790)     at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.bringToTop(PartServiceImpl.java:404)     at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.showPart(PartServiceImpl.java:1239)     at org.eclipse.ui.internal.WorkbenchPage.busyOpenEditor(WorkbenchPage.java:3207)     at org.eclipse.ui.internal.WorkbenchPage.lambda$9(WorkbenchPage.java:3112)     at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:72)     at org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:3110)     at org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:3080)     at org.eclipse.ui.internal.WorkbenchPage.openEditor(WorkbenchPage.java:3071)     at org.eclipse.ui.ide.IDE.openEditor(IDE.java:570)     at org.eclipse.ui.ide.IDE.openEditor(IDE.java:525)     at org.eclipse.dltk.internal.ui.editor.EditorUtility.openInEditor(EditorUtility.java:380)     at org.eclipse.dltk.internal.ui.editor.EditorUtility.openInEditor(EditorUtility.java:149)     at org.eclipse.dltk.internal.ui.actions.OpenActionUtil.open(OpenActionUtil.java:45)     at org.eclipse.dltk.ui.actions.OpenAction.run(OpenAction.java:265)     at org.eclipse.dltk.ui.actions.OpenAction.run(OpenAction.java:246)     at org.eclipse.dltk.ui.actions.SelectionDispatchAction.dispatchRun(SelectionDispatchAction.java:282)     at org.eclipse.dltk.ui.actions.SelectionDispatchAction.run(SelectionDispatchAction.java:260)     at org.eclipse.dltk.internal.ui.scriptview.ScriptExplorerActionGroup.handleOpen(ScriptExplorerActionGroup.java:327)     at org.eclipse.dltk.internal.ui.scriptview.ScriptExplorerPart.lambda$2(ScriptExplorerPart.java:629)     at org.eclipse.jface.viewers.StructuredViewer$2.run(StructuredViewer.java:797)     at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:45)     at org.eclipse.ui.internal.JFaceUtil.lambda$0(JFaceUtil.java:47)     at org.eclipse.jface.util.SafeRunnable.run(SafeRunnable.java:174)     at org.eclipse.jface.viewers.StructuredViewer.fireOpen(StructuredViewer.java:794)     at org.eclipse.jface.viewers.StructuredViewer.handleOpen(StructuredViewer.java:1110)     at org.eclipse.jface.util.OpenStrategy.fireOpenEvent(OpenStrategy.java:275)     at org.eclipse.jface.util.OpenStrategy.access$2(OpenStrategy.java:270)     at org.eclipse.jface.util.OpenStrategy$1.handleEvent(OpenStrategy.java:310)     at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:89)     at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5676)     at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1423)     at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4935)     at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4429)     at org.eclipse.jface.window.Window.runEventLoop(Window.java:823)     at org.eclipse.jface.window.Window.open(Window.java:799)     at org.eclipse.ui.internal.views.log.EventDetailsDialog.open(EventDetailsDialog.java:191)     at org.eclipse.ui.internal.views.log.EventDetailsDialogAction.run(EventDetailsDialogAction.java:102)     at org.eclipse.ui.internal.views.log.LogView.lambda$2(LogView.java:588)     at org.eclipse.jface.viewers.StructuredViewer$1.run(StructuredViewer.java:777)     at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:45)     at org.eclipse.ui.internal.JFaceUtil.lambda$0(JFaceUtil.java:47)     at org.eclipse.jface.util.SafeRunnable.run(SafeRunnable.java:174)     at org.eclipse.jface.viewers.StructuredViewer.fireDoubleClick(StructuredViewer.java:774)     at org.eclipse.jface.viewers.AbstractTreeViewer.handleDoubleSelect(AbstractTreeViewer.java:1518)     at org.eclipse.jface.viewers.StructuredViewer$4.widgetDefaultSelected(StructuredViewer.java:1205)     at org.eclipse.jface.util.OpenStrategy.fireDefaultSelectionEvent(OpenStrategy.java:251)     at org.eclipse.jface.util.OpenStrategy.access$0(OpenStrategy.java:249)     at org.eclipse.jface.util.OpenStrategy$1.handleEvent(OpenStrategy.java:308)     at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:89)     at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5676)     at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1423)     at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4935)     at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4429)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$5.run(PartRenderingEngine.java:1160)     at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:338)     at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1049)     at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:155)     at org.eclipse.ui.internal.Workbench.lambda$3(Workbench.java:660)     at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:338)     at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:559)     at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:154)     at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:150)     at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203)     at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:137)     at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:107)     at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:401)     at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255)     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)     at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)     at java.base/java.lang.reflect.Method.invoke(Method.java:566)     at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:657)     at org.eclipse.equinox.launcher.Main.basicRun(Main.java:594)     at org.eclipse.equinox.launcher.Main.run(Main.java:1465)     at org.eclipse.equinox.launcher.Main.main(Main.java:1438) Caused by: XCASParsingException: Error parsing XCAS or XMI-CAS from source at line , column : unknown type: de.tudarmstadt.ukp.dkpro.core.api.metadata.type.DocumentMetaData.     at org.apache.uima.cas.impl.XmiCasDeserializer$XmiCasDeserializerHandler.createException(XmiCasDeserializer.java:1635)     at org.apache.uima.cas.impl.XmiCasDeserializer$XmiCasDeserializerHandler.createException(XmiCasDeserializer.java:1657)     at org.apache.uima.cas.impl.XmiCasDeserializer$XmiCasDeserializerHandler.readFS(XmiCasDeserializer.java:490)     at org.apache.uima.cas.impl.XmiCasDeserializer$XmiCasDeserializerHandler.startElement(XmiCasDeserializer.java:409)     at org.apache.uima.util.XmlCasDeserializer$XmlCasDeserializerHandler.startElement(XmlCasDeserializer.java:150)     at java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:510)     at java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(AbstractXMLDocumentParser.java:183)     at java.xml/com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanStartElement(XMLNSDocumentScannerImpl.java:351)     at java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2710)     at java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:605)     at java.xml/com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:112)     at java.xml/com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:534)     at java.xml/com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:888)     at java.xml/com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:824)     at java.xml/com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)     at java.xml/com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1216)     at org.apache.uima.util.XmlCasDeserializer.deserializeR(XmlCasDeserializer.java:111)     at org.apache.uima.util.CasIOUtils.load(CasIOUtils.java:366)     ... 144 more -- Björn Rudzewitz, M.A. Universität Tübingen Seminar für Sprachwissenschaft br@sfs.uni-tuebingen.de http://www.sfs.uni-tuebingen.de/~brzdwtz/