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Subject: Re: examples of using maven with uima, uimaFit, ruta, etc?
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From: =?UTF-8?Q?Peter_Kl=c3=bcgl?= <peter.kluegl@averbis.com>
Message-ID: <569DFA84.4090605@averbis.com>
Date: Tue, 19 Jan 2016 09:57:40 +0100
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Yes, exactly. addRutaNature needs to be set to true and the buildpath
needs to point ot the correct folder. Then all should work just fine.

Best,

Peter

Am 18.01.2016 um 22:49 schrieb Bonnie MacKellar:
> Thanks!  I am also working with medical text but am bypassing ctakes for
> now. I think Metamap gives us what we need.
>
> In the cTAKES based project, I see this in the POM file
>
>   <!-- Add UIMA Ruta nature to .project -->
>               <!-- default value: false -->
>               <addRutaNature>true</addRutaNature>
>
>               <!-- Buildpath of the UIMA Ruta Workbench (IDE) for this
> project -->
>               <!-- default value: none -->
>               <buildPaths>
>                 <buildPath>script:src/main/ruta/</buildPath>
> <!--
> <buildPath>descriptor:target/generated-sources/ruta/descriptor/</buildPath>
> -->
> <!--
> <buildPath>resources:src/main/resources/wordlists</buildPath> -->
>               </buildPaths>
>
>
> This looks useful. What is the effect of adding RutaNature in the POM file?
> If I add this snippet, will I be able to run Workbench with a script in a
> nonstandard location?
>
> thanks!
> Bonnie MacKellar
>
> On Mon, Jan 18, 2016 at 10:14 AM, Peter Klügl <peter.kluegl@averbis.com>
> wrote:
>
>> I missed the default example project:
>>
>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/example-projects/ruta-maven-example
>>
>> There is currently some effort to provide a ruta-based deidentification
>> of clinical notes in cTAKES. It's work in progress and not up-to-date
>> right now, but maybe also an example you can look at:
>>
>> https://svn.apache.org/repos/asf/ctakes/sandbox/ctakes-clinical-deid
>>
>> Let me know if these examples do help or if you need something else.
>>
>> Best,
>>
>> Peter
>>
>> Am 17.01.2016 um 22:42 schrieb Peter Klügl:
>>> and sorry for all the typos...
>>>
>>> Am 17.01.2016 um 22:34 schrieb Peter Klügl:
>>>> Hi,
>>>>
>>>> first of all, sorry that I did not answer your last mail on Friday as
>>>> I said.
>>>>
>>>> There are some example/test projects for UIMA Ruta based on maven:
>>>>
>>>> http://home.apache.org/~pkluegl/examples/date-example.zip
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/conflictingShortName
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/importByName
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/multimodule
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/wordlists
>>>>
>>>> In the last four projects, the version needs to be set since they are
>>>> integration tests. To test the projects, siply download/ extract or
>>>> checkout the projects and import them as mexisting maven projects in
>>>> Eclipse.
>>>>
>>>> The documentation of the maven plugin for ruta can be found here:
>>>>
>>>>
>> https://uima.apache.org/d/ruta-current/tools.ruta.book.html#ugr.tools.ruta.maven
>>>>
>>>>
>>>> I will try to provide a more information (also for your last mail)
>>>> tomorrow.
>>>>
>>>> Best,
>>>>
>>>> Peter
>>>>
>>>>
>>>> Am 17.01.2016 um 20:34 schrieb Bonnie MacKellar:
>>>>> Hi,
>>>>>
>>>>> I had posted earlier asking about best practices for building a project
>>>>> that uses uimaFit, Ruta, and the Metamap annotator. My current project,
>>>>> while it works, is inordinately complex and I can't seem to figure
>>>>> out the
>>>>> right way to structure it. I did get the advice to use Maven. I don't
>>>>> normally use Maven, but I would if it gave some way to simplify this
>>>>> mess.
>>>>> However, I can't find any mention of using Maven in the Uima
>>>>> tutorial, so I
>>>>> am at a loss as to how to start. Are there instructions on the web
>>>>> that I
>>>>> am just not finding? An example project?
>>>>>
>>>>> thanks,
>>>>> Bonnie MacKellar
>>>>>
>>