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From Peter Klügl <peter.klu...@averbis.com>
Subject Re: examples of using maven with uima, uimaFit, ruta, etc?
Date Tue, 19 Jan 2016 08:57:40 GMT
Yes, exactly. addRutaNature needs to be set to true and the buildpath
needs to point ot the correct folder. Then all should work just fine.

Best,

Peter

Am 18.01.2016 um 22:49 schrieb Bonnie MacKellar:
> Thanks!  I am also working with medical text but am bypassing ctakes for
> now. I think Metamap gives us what we need.
>
> In the cTAKES based project, I see this in the POM file
>
>   <!-- Add UIMA Ruta nature to .project -->
>               <!-- default value: false -->
>               <addRutaNature>true</addRutaNature>
>
>               <!-- Buildpath of the UIMA Ruta Workbench (IDE) for this
> project -->
>               <!-- default value: none -->
>               <buildPaths>
>                 <buildPath>script:src/main/ruta/</buildPath>
> <!--
> <buildPath>descriptor:target/generated-sources/ruta/descriptor/</buildPath>
> -->
> <!--
> <buildPath>resources:src/main/resources/wordlists</buildPath> -->
>               </buildPaths>
>
>
> This looks useful. What is the effect of adding RutaNature in the POM file?
> If I add this snippet, will I be able to run Workbench with a script in a
> nonstandard location?
>
> thanks!
> Bonnie MacKellar
>
> On Mon, Jan 18, 2016 at 10:14 AM, Peter Klügl <peter.kluegl@averbis.com>
> wrote:
>
>> I missed the default example project:
>>
>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/example-projects/ruta-maven-example
>>
>> There is currently some effort to provide a ruta-based deidentification
>> of clinical notes in cTAKES. It's work in progress and not up-to-date
>> right now, but maybe also an example you can look at:
>>
>> https://svn.apache.org/repos/asf/ctakes/sandbox/ctakes-clinical-deid
>>
>> Let me know if these examples do help or if you need something else.
>>
>> Best,
>>
>> Peter
>>
>> Am 17.01.2016 um 22:42 schrieb Peter Klügl:
>>> and sorry for all the typos...
>>>
>>> Am 17.01.2016 um 22:34 schrieb Peter Klügl:
>>>> Hi,
>>>>
>>>> first of all, sorry that I did not answer your last mail on Friday as
>>>> I said.
>>>>
>>>> There are some example/test projects for UIMA Ruta based on maven:
>>>>
>>>> http://home.apache.org/~pkluegl/examples/date-example.zip
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/conflictingShortName
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/importByName
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/multimodule
>>>>
>> https://svn.apache.org/repos/asf/uima/ruta/trunk/ruta-maven-plugin/src/it/wordlists
>>>>
>>>> In the last four projects, the version needs to be set since they are
>>>> integration tests. To test the projects, siply download/ extract or
>>>> checkout the projects and import them as mexisting maven projects in
>>>> Eclipse.
>>>>
>>>> The documentation of the maven plugin for ruta can be found here:
>>>>
>>>>
>> https://uima.apache.org/d/ruta-current/tools.ruta.book.html#ugr.tools.ruta.maven
>>>>
>>>>
>>>> I will try to provide a more information (also for your last mail)
>>>> tomorrow.
>>>>
>>>> Best,
>>>>
>>>> Peter
>>>>
>>>>
>>>> Am 17.01.2016 um 20:34 schrieb Bonnie MacKellar:
>>>>> Hi,
>>>>>
>>>>> I had posted earlier asking about best practices for building a project
>>>>> that uses uimaFit, Ruta, and the Metamap annotator. My current project,
>>>>> while it works, is inordinately complex and I can't seem to figure
>>>>> out the
>>>>> right way to structure it. I did get the advice to use Maven. I don't
>>>>> normally use Maven, but I would if it gave some way to simplify this
>>>>> mess.
>>>>> However, I can't find any mention of using Maven in the Uima
>>>>> tutorial, so I
>>>>> am at a loss as to how to start. Are there instructions on the web
>>>>> that I
>>>>> am just not finding? An example project?
>>>>>
>>>>> thanks,
>>>>> Bonnie MacKellar
>>>>>
>>


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