Hi,
I am having trouble running the ConceptMapper annotator via the Document Analyzer application.
UIMA version: 2.8.1
github fork of UIMA-addons: https://github.com/zednis/uima-addons
java: 1.8.0_45
I have made slight updates to the add-on annotator pom files so they will successfully build
with Java 8.
I also updated the imports of the ConceptMapperOffsetTokenizer.xml to be references to XML
files in the same directory (see https://github.com/zednis/uima-addons/blob/trunk/ConceptMapper/desc/analysis_engine/primitive/ConceptMapperOffsetTokenizer.xml)
I built a PEAR archive of the ConceptMapper annotator using `mvn package` and I used $UIMA_HOME/bin/runPearInstaller.sh
to install the ConceptMapper annotator at /opt/apache-uima/test/ConceptMapper.
I am attempting to use the ConceptMapper annotator with the Document Analyzer application.
I have updated the fileUrl for the dictionary to file:///opt/apache-uima/test/ConceptMapper/resources/dict/testDict.xml
in the installed annotator.
I have specified the following Analysis Engine descriptor location:
/opt/apache-uima/test/ConceptMapper/desc/analysis_engine/primitive/ConceptMapperOffsetTokenizer.xml
When I run the document analyzer I get the following stacktrace:
$ /opt/apache-uima/bin/documentAnalyzer.sh
org.apache.uima.resource.ResourceInitializationException: The class org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl
could not be found. (Descriptor: file:/opt/apache-uima/test/ConceptMapper/desc/analysis_engine/primitive/ConceptMapperOffsetTokenizer.xml)
at org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603)
at org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:457)
at org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:193)
at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:130)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:407)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:256)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:429)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:186)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:371)
at org.apache.uima.tools.docanalyzer.DocumentAnalyzer.runProcessingThread(DocumentAnalyzer.java:1223)
at org.apache.uima.tools.docanalyzer.DocumentAnalyzer$ProcessingThread.run(DocumentAnalyzer.java:1332)
Caused by: java.lang.ClassNotFoundException: org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:600)
... 18 more
What confuses me about this is that the org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl
class is in the installed annotator jarfile (uima-an-conceptMapper.jar).
$ jar tf /opt/apache-uima/test/ConceptMapper/lib/uima-an-conceptMapper.jar | grep DictionaryResource_impl
org/apache/uima/conceptMapper/support/dictionaryResource/CompiledDictionaryResource_impl.class
org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$1.class
org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntriesByLength_impl$ReverseOrderIntegerComparator.class
org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntriesByLength_impl.class
org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntriesImpl.class
org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntryImpl.class
org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictLoader.class
org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl.class
Any ideas why this class would not be found by the document analyzer even though it is in
the jar?
Thanks,
Stephan Zednik
zednis2@rpi.edu
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