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Subject: Re: UIMA Ruta not capturing some XML markup with attributes?
From: Mario Gazzo <mario.gazzo@gmail.com>
In-Reply-To: <56266434.5040108@averbis.com>
Date: Tue, 20 Oct 2015 19:22:47 +0200
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Message-Id: <69472753-AB82-4575-9D46-FEE865AB39DB@gmail.com>
References: <33DAD900-EAF3-4148-9DE0-06D3378304D5@gmail.com>
 <56266434.5040108@averbis.com>
To: user@uima.apache.org

I believe it should be extended since I think that a RUTA user would =
expect that the MARKUP annotation indeed captures at least XML and HTML =
markup properly. The examples are from a Pub Med Central XML file that =
follows the NISO JATS specification so I will assume it is proper =
formatted XML without knowing all the details of the spec.

We have managed to implement a crude workaround for now but let us know =
when an improved version becomes available.

Cheers
Mario

> On 20 Oct 2015, at 17:56 , Peter Kl=C3=BCgl <peter.kluegl@averbis.com> =
wrote:
>=20
> Hi Mario,
>=20
> yes, and the different quote also causes problems (are these valid?).
>=20
> The MARUP annotation is not created by jflex like the other =
annoations,
> but by a postprocessing step using an regular epression. This =
expression
> does not cover theses cases (markupPattern in DefaultSeeder.java).
>=20
> Should we extend it?
>=20
> Best,
>=20
> Peter
>=20
> Am 20.10.2015 um 17:26 schrieb Mario Gazzo:
>> Hi Peter,
>>=20
>> RUTA doesn=E2=80=99t seem to capture some XML markup with attributes. =
Here are some examples:
>>=20
>> <xref ref-type=3D"bibr" rid=3D"b35-ehp0113-000220=E2=80=9D>
>> <sec sec-type=3D"methods=E2=80=9D>
>>=20
>> The above markup examples are totally missing in the TokenSeed =
annotations. I wonder whether it is related to the dash in the attribute =
names since other markup without this appear to be captured.
>>=20
>> Can you confirm that the dash could cause the problem?
>>=20
>> Cheers
>> Mario
>=20