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From Kevin Cousot <kevin.cou...@gmail.com>
Subject Re: [UIMA-RUTA] Annotator processing failed
Date Thu, 08 Oct 2015 15:32:57 GMT
I will check this first thing tomorrow.

Thank you for your help,
Kevin.

Le 07/10/2015 20:03, Peter Klügl a écrit :
> Hi,
>
> the exception indicates that there is an annotation in your CAS with
> invalid offsets, e.g., the end is bigger than the document length.
> This causes an StringIndexOutOfBoundsException when getCoveredText()
> is called. (The stupid thing is that the getCoveredText() call in ruta
> that causes the exception is probably not required at all.)
>
> Debugging it in Eclipse can be a bit annoying since the UIMA debugging
> support will most likely also throw an exception exactly for this
> annotation. I would write an additional analysis engine that iterates
> over all annotation and checks the validity their offsets. You can
> also open the xmi file and search for an offset with 50275.
>
> Best,
>
> Peter
>
>
>
> Am 07.10.2015 um 15:09 schrieb Kevin Cousot:
>> Hi all,
>>
>> I ran a simple aggregate analysis engine on two pure-text corpora,
>> performing preprocessing operations such as tokenization, lemmatization,
>> POS-tagging and so on.
>>
>> The second step is applying a RUTA script to the resulting .xmi files.
>> The RUTA script contains rules of the form :
>>
>>      (Token.partOfSpeech == "Det"
>>       NominalPhrase{-> MARK(Cause)}
>>       Token.lemma == "bloquer"
>>       Token.partOfSpeech == "Det"
>>       NominalPhrase{-> MARK(Effect)}){-> MARK(Causality)};
>>
>> Everything works fine for the first corpus, yet the second fails.
>>
>> As a UIMA newcomer, I have trouble understanding the situation.
>>
>> Could someone provide insight regarding this issue ?
>>
>> Full stack is available at the end of this message, please feel free to
>> ask for more informations.
>>
>> Thank you,
>> Kevin.
>>
>> oct. 07, 2015 2:08:02 PM
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl
>> callAnalysisComponentProcess(417)
>> GRAVE: Exception occurred
>> org.apache.uima.analysis_engine.AnalysisEngineProcessException:
>> Annotator processing failed.
>>      at
>> org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:547)
>>      at
>> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
>>
>>      at
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
>>
>>      at
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:308)
>>
>>      at
>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:269)
>>
>>      at
>> org.apache.uima.ruta.ide.launching.RutaLauncher.processFile(RutaLauncher.java:169)
>>
>>      at
>> org.apache.uima.ruta.ide.launching.RutaLauncher.main(RutaLauncher.java:130)
>>
>> Caused by: java.lang.StringIndexOutOfBoundsException: String index out
>> of range: 50275
>>      at java.lang.String.substring(String.java:1950)
>>      at
>> org.apache.uima.jcas.tcas.Annotation.getCoveredText(Annotation.java:122)
>>      at
>> org.apache.uima.ruta.expression.feature.FeatureMatchExpression.checkFeatureValue(FeatureMatchExpression.java:121)
>>
>>      at
>> org.apache.uima.ruta.expression.feature.FeatureMatchExpression.checkFeatureValue(FeatureMatchExpression.java:84)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaTypeMatcher.checkFeature(RutaTypeMatcher.java:227)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaTypeMatcher.match(RutaTypeMatcher.java:196)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaRuleElement.doMatch(RutaRuleElement.java:368)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:73)
>>
>>      at
>> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:84)
>>
>>      at
>> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:74)
>>
>>      at
>> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:74)
>>
>>      at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
>>      at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
>>      at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
>>      at
>> org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
>>      at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
>>      at
>> org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:545)
>>      ... 6 more
>>
>> Exception in thread "main"
>> org.apache.uima.analysis_engine.AnalysisEngineProcessException:
>> Annotator processing failed.
>>      at
>> org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:547)
>>      at
>> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
>>
>>      at
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
>>
>>      at
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:308)
>>
>>      at
>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:269)
>>
>>      at
>> org.apache.uima.ruta.ide.launching.RutaLauncher.processFile(RutaLauncher.java:169)
>>
>>      at
>> org.apache.uima.ruta.ide.launching.RutaLauncher.main(RutaLauncher.java:130)
>>
>> Caused by: java.lang.StringIndexOutOfBoundsException: String index out
>> of range: 50275
>>      at java.lang.String.substring(String.java:1950)
>>      at
>> org.apache.uima.jcas.tcas.Annotation.getCoveredText(Annotation.java:122)
>>      at
>> org.apache.uima.ruta.expression.feature.FeatureMatchExpression.checkFeatureValue(FeatureMatchExpression.java:121)
>>
>>      at
>> org.apache.uima.ruta.expression.feature.FeatureMatchExpression.checkFeatureValue(FeatureMatchExpression.java:84)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaTypeMatcher.checkFeature(RutaTypeMatcher.java:227)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaTypeMatcher.match(RutaTypeMatcher.java:196)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaRuleElement.doMatch(RutaRuleElement.java:368)
>>
>>      at
>> org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:73)
>>
>>      at
>> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:84)
>>
>>      at
>> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:74)
>>
>>      at
>> org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:74)
>>
>>      at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
>>      at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
>>      at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
>>      at
>> org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
>>      at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
>>      at
>> org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:545)
>>      ... 6 more
>>
>


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