From user-return-4833-apmail-uima-user-archive=uima.apache.org@uima.apache.org Sat Mar 30 20:03:03 2013 Return-Path: X-Original-To: apmail-uima-user-archive@www.apache.org Delivered-To: apmail-uima-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id C0913FAAB for ; Sat, 30 Mar 2013 20:03:03 +0000 (UTC) Received: (qmail 67546 invoked by uid 500); 30 Mar 2013 20:03:03 -0000 Delivered-To: apmail-uima-user-archive@uima.apache.org Received: (qmail 67518 invoked by uid 500); 30 Mar 2013 20:03:03 -0000 Mailing-List: contact user-help@uima.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@uima.apache.org Delivered-To: mailing list user@uima.apache.org Received: (qmail 67510 invoked by uid 99); 30 Mar 2013 20:03:03 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Sat, 30 Mar 2013 20:03:03 +0000 X-ASF-Spam-Status: No, hits=-0.7 required=5.0 tests=RCVD_IN_DNSWL_LOW,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: domain of richard.eckart@gmail.com designates 74.125.83.52 as permitted sender) Received: from [74.125.83.52] (HELO mail-ee0-f52.google.com) (74.125.83.52) by apache.org (qpsmtpd/0.29) with ESMTP; Sat, 30 Mar 2013 20:02:57 +0000 Received: by mail-ee0-f52.google.com with SMTP id d17so600767eek.39 for ; Sat, 30 Mar 2013 13:02:36 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=x-received:content-type:mime-version:subject:from:in-reply-to:date :content-transfer-encoding:message-id:references:to:x-mailer; bh=p6SWOZRXDLyAGWzB+CvpyKZEd7wKgPqPlMQjqHTQk+s=; b=pzalK+SSYN7rp9UVaymN90RPw1f/WFANYU6M0UK+Kyj9R1nuKwcJmAUzZ6JAane5QZ powclwYrMjvmd+eUinCkDi+7327lklq08Vu/ZN+lZD1yGLHyGpKMSR5PfhOlwk8vVYhF 9VES0wbdH4zKKUvbC0yyWHpYimwS4W1RMlsDTwX9Vpm2lrlOtGvtTE8DSnFrwFn738vw jPdLLcEUdrRZM6+ycdZN5yuqZZbwdQvY0OooE7R2stGq1Pi9lNkPRg0GIr390pLBTLb7 cHvD7JQBnwirDS8u2DH/eFBrngysnVsbrXLPVoPxzyHAsPkmH7biAbSl4+9rQPuhkPKG rAlA== X-Received: by 10.14.4.69 with SMTP id 45mr21350892eei.0.1364673756110; Sat, 30 Mar 2013 13:02:36 -0700 (PDT) Received: from [10.0.1.20] (ip-178-200-235-87.unitymediagroup.de. [178.200.235.87]) by mx.google.com with ESMTPS id q5sm11724390eeo.17.2013.03.30.13.02.34 (version=TLSv1 cipher=ECDHE-RSA-RC4-SHA bits=128/128); Sat, 30 Mar 2013 13:02:35 -0700 (PDT) Content-Type: text/plain; charset=us-ascii Mime-Version: 1.0 (Mac OS X Mail 6.3 \(1503\)) Subject: Re: Not able to run annotator for DNA sequence From: Richard Eckart de Castilho In-Reply-To: Date: Sat, 30 Mar 2013 21:02:32 +0100 Content-Transfer-Encoding: quoted-printable Message-Id: <83EEB984-B6BF-407E-9197-B11EB1CA0A78@gmail.com> References: To: user@uima.apache.org X-Mailer: Apple Mail (2.1503) X-Virus-Checked: Checked by ClamAV on apache.org Hi, > Now I was trying to create an Annotator and Analysis Engine for DNA = sequences > but when I try to run that with the Document Analyzer, I get a pop-up = with > following error: > org.apache.uima.resource.ResourceInitializationException: Annotator = class=20 > "bio.uima.DNASequenceAnnotator" was not found. (Descriptor: file:=20 > /home/name/workspace/DNAUima/descriptors/DNASequenceAEDescriptor.xml) > CausedBy: java.lang.ClassNotFoundException: = bio.uima.DNASequenceAnnotator >=20 ... > 13. Ran the Document analyzer. Run > Run configurations > UIMA = Document > Analyzer. Project: uimaj-examples. Main class:=20 > org.apache.uima.tools.docanalyzer.DocumentAnalyzer. Clicked Run. This > opened up the Document Analyzer. Try adding the project containing your bio.uima.DNASequenceAnnotator = class on the "classpath" tab of this run configuration.=20 Cheers, -- Richard