Return-Path: X-Original-To: apmail-uima-user-archive@www.apache.org Delivered-To: apmail-uima-user-archive@www.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 9F6E5E9C4 for ; Mon, 11 Feb 2013 14:59:13 +0000 (UTC) Received: (qmail 48688 invoked by uid 500); 11 Feb 2013 14:59:13 -0000 Delivered-To: apmail-uima-user-archive@uima.apache.org Received: (qmail 46312 invoked by uid 500); 11 Feb 2013 14:59:09 -0000 Mailing-List: contact user-help@uima.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: user@uima.apache.org Delivered-To: mailing list user@uima.apache.org Received: (qmail 46284 invoked by uid 99); 11 Feb 2013 14:59:08 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 11 Feb 2013 14:59:08 +0000 X-ASF-Spam-Status: No, hits=-2.3 required=5.0 tests=RCVD_IN_DNSWL_MED,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: local policy) Received: from [129.176.212.47] (HELO mail10.mayo.edu) (129.176.212.47) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 11 Feb 2013 14:59:01 +0000 Received: from roedlp005a.mayo.edu (HELO mail10.mayo.edu) ([129.176.158.0]) by ironport10-dlp.mayo.edu with ESMTP; 11 Feb 2013 08:58:40 -0600 X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: Av8EANgFGVGBsNQ1/2dsb2JhbABCA8EZFnOCHwEBAQQ6SwICAgEIEQQBAQsUCQcbFxQJCAIEEwiICgy2aIkPBI5agk5hA5dBjzaDBoIk Received: from mhro1a.mayo.edu ([129.176.212.53]) by ironport10.mayo.edu with ESMTP; 11 Feb 2013 08:58:40 -0600 Received: from MSGPEXCEI06A.mfad.mfroot.org (msgpexcei06a.mayo.edu [129.176.249.167]) by mhro1a.mayo.edu with ESMTP id BT-MMP-5195248 for user@uima.apache.org; Mon, 11 Feb 2013 08:58:39 -0600 Received: from MSGPEXCEI12A.mfad.mfroot.org (129.176.249.168) by MSGPEXCEI06A.mfad.mfroot.org (129.176.249.167) with Microsoft SMTP Server (TLS) id 14.2.328.9; Mon, 11 Feb 2013 08:58:39 -0600 Received: from MSGPEXCHA08A.mfad.mfroot.org ([169.254.11.82]) by MSGPEXCEI12A.mfad.mfroot.org ([169.254.6.236]) with mapi id 14.02.0328.009; Mon, 11 Feb 2013 08:58:39 -0600 From: "Masanz, James J." To: "'user@uima.apache.org'" Subject: RE: making hiearchical annotations in UIMA Thread-Topic: making hiearchical annotations in UIMA Thread-Index: AQHOBn0oUohBx27tnEaPB7QgdFghsZh0wIfQ Date: Mon, 11 Feb 2013 14:58:38 +0000 Message-ID: <996FC801C05DF64A84246A106FACACD0079769@MSGPEXCHA08A.mfad.mfroot.org> References: <1E4E297A-8644-43F7-B1E8-1734BA5E47C1@cs.ucdavis.edu> In-Reply-To: <1E4E297A-8644-43F7-B1E8-1734BA5E47C1@cs.ucdavis.edu> Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [10.128.209.20] Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-CFilter-Loop: Reflected X-Virus-Checked: Checked by ClamAV on apache.org Significant changes were made to the type sysem for cTAKES (now Apache cTAK= ES [incubating]) to generalize it and align it with standards where possibl= e. It includes semantic and syntactic types. http://incubator.apache.org/ctakes/ I suggest you look at ctakes-constituency-parser for an example of handling= a syntax tree. The type system for the current release candidate is: https://svn.apache.org/repos/asf/incubator/ctakes/branches/ctakes-3.0.0-inc= ubating/ctakes-type-system/src/main/resources/org/apache/ctakes/typesystem/= types/TypeSystem.xml And the latest release under development is: https://svn.apache.org/repos/asf/incubator/ctakes/trunk/ctakes-type-system/= src/main/resources/org/apache/ctakes/typesystem/types/TypeSystem.xml Here is the citation for the type system A common type system for clinical natural language processing. =20 J Biomed Sem. 4:1. 2013. http://www.jbiomedsem.com/content/4/1/1/abstract Regards, James Masanz Senior Analyst/Programmer Department of Information Technology Phone: (507) 722-1727 masanz.james@mayo.edu Mayo Clinic mayoclinic.org=20 > -----Original Message----- > From: user-return-4751-Masanz.James=3Dmayo.edu@uima.apache.org [mailto:us= er- > return-4751-Masanz.James=3Dmayo.edu@uima.apache.org] On Behalf Of Prem > Devanbu > Sent: Friday, February 08, 2013 6:38 PM > To: user@uima.apache.org > Cc: Jui-Chung Wu > Subject: making hiearchical annotations in UIMA >=20 > We want to annotated some text with a syntax tree, and we're having > trouble finding examples or tutorial content on how this should be done > within UIMA. Any pointers appreciated. >=20 > Prem Devanbu > Professor, Computer Science > UC Davis >=20 >=20