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From "Ahmed Abdeen(Home)" <ahmed.elma...@gmail.com>
Subject Re: bioNLP UIMA
Date Wed, 11 Jun 2008 21:03:26 GMT
Hi Marshall,I actually sent my question there and I was told that those
files aren't there's to begin with. I was advised to check with uima-users
after I posted my question to the uima-developers list.

Thanks for your response anyways!
Ahmed

On Wed, Jun 11, 2008 at 3:23 PM, Marshall Schor <msa@schor.com> wrote:

> Hello, Ahmed -
>
> I think this question is best directed to the bioNLP group.
> It looks like the build script is not finding many different classes.
>  Perhaps there is a "readme" in the distribution you got which gives
> instructions on obtaining other Jars from places like Stanford (the import
> of "edu.stanford.nlp. . ." implies this may be coming from Standford
> university).
>
> -Marshall
>
>
> Ahmed Abdeen(Home) wrote:
>
>> Apologies from cross-listing!
>>
>> Hello,I am trying to compile bioNLP UIMA tools but I am getting the
>> following errors:
>> Buildfile: build.xml
>>
>> compile:
>>    [javac] Compiling 161 source files to
>>
>> /Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/build/classes
>>    [javac]
>>
>> /Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/stanfordparser/StanfordParser_Util.java:48:
>> cannot find symbol
>>    [javac] symbol  : class TypedDependencyList
>>    [javac] location: package edu.stanford.nlp.trees
>>    [javac] import edu.stanford.nlp.trees.TypedDependencyList;
>>    [javac]                               ^
>>    [javac]
>>
>> /Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/stanfordparser/StanfordParser_Util.java:418:
>> cannot find symbol
>>    [javac] symbol  : class TypedDependencyList
>>    [javac] location: class
>> edu.uchsc.ccp.util.external.stanfordparser.StanfordParser_Util
>>    [javac]         TypedDependencyList tdl = gs.typedDependencies();
>>    [javac]         ^
>>    [javac]
>>
>> /Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/penn/PennBioTokenizer_Util.java:49:
>> cannot find symbol
>>    [javac] symbol  : constructor BioTokenizer(java.lang.String)
>>    [javac] location: class edu.upenn.cis.tokenizers.BioTokenizer
>>    [javac]         bt = new BioTokenizer(tokenizerModelFile);
>>    [javac]              ^
>>    [javac] Note: Some input files use or override a deprecated API.
>>    [javac] Note: Recompile with -Xlint:deprecation for details.
>>    [javac] Note: Some input files use unchecked or unsafe operations.
>>    [javac] Note: Recompile with -Xlint:unchecked for details.
>>    [javac] 3 errors
>>
>> BUILD FAILED
>>
>> If you have had experience with bioNLP UIMA and got it to compile, please
>> let me know. I could use some help.
>> Thanks in advance!
>> Ahmed
>>
>>
>>
>
>

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