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From "Ahmed Abdeen(Home)" <ahmed.elma...@gmail.com>
Subject bioNLP UIMA
Date Wed, 11 Jun 2008 15:01:11 GMT
Apologies from cross-listing!

Hello,I am trying to compile bioNLP UIMA tools but I am getting the
following errors:
Buildfile: build.xml

compile:
    [javac] Compiling 161 source files to
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/build/classes
    [javac]
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/stanfordparser/StanfordParser_Util.java:48:
cannot find symbol
    [javac] symbol  : class TypedDependencyList
    [javac] location: package edu.stanford.nlp.trees
    [javac] import edu.stanford.nlp.trees.TypedDependencyList;
    [javac]                               ^
    [javac]
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/stanfordparser/StanfordParser_Util.java:418:
cannot find symbol
    [javac] symbol  : class TypedDependencyList
    [javac] location: class
edu.uchsc.ccp.util.external.stanfordparser.StanfordParser_Util
    [javac]         TypedDependencyList tdl = gs.typedDependencies();
    [javac]         ^
    [javac]
/Users/ahmedabdeenhamed/Projects/bionlp_uima_repository-1.0.1/src/edu/uchsc/ccp/util/external/penn/PennBioTokenizer_Util.java:49:
cannot find symbol
    [javac] symbol  : constructor BioTokenizer(java.lang.String)
    [javac] location: class edu.upenn.cis.tokenizers.BioTokenizer
    [javac]         bt = new BioTokenizer(tokenizerModelFile);
    [javac]              ^
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 3 errors

BUILD FAILED

If you have had experience with bioNLP UIMA and got it to compile, please
let me know. I could use some help.
Thanks in advance!
Ahmed

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