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From Nathan Leung <ncle...@gmail.com>
Subject Re: Segfault in worker when submitting topology
Date Fri, 03 Jan 2014 21:39:45 GMT
Presuming that's where you keep your libraries, and that you don't have the
newer libjzmq installed in /share/storm/jzmq/lib it looks good.  I would
double check zmq.. did you build it yourself?  Also, you can try netty as
the transport (see:
http://storm-project.net/2013/12/08/storm090-released.html) since that runs
in the jvm.  If this works then it would isolate zmq as the likely source
of the problem (and I would suspect something like the installed version
being built for a different platform).


On Fri, Jan 3, 2014 at 4:25 PM, Brian C. Huffman <
bhuffman@etinternational.com> wrote:

>  Still breaks with storm 0.9.0.1 and zmq 2.1.7 and frozen jzmq.
>
> Just to be sure this isn't an issue - I've specified a library path in
> storm's config so that it can find the libraries for zmq and jzmq.  Is this
> ok?
> java.library.path:
> "/share/storm/zeromq-2.1.7/lib:/share/storm/jzmq/lib:/usr/lib"
>
> Thanks,
> -b
>
>
>
> On 01/03/2014 03:06 PM, Nathan Leung wrote:
>
> can you try storm 0.9.0.1 with zmq 2.1.7 and frozen jzmq?  assuming that
> it doesn't work, can you try with netty as your transport?  It would seem
> to me that something is wrong with your zmq library,
>
>
> On Fri, Jan 3, 2014 at 2:58 PM, Brian C. Huffman <
> bhuffman@etinternational.com> wrote:
>
>>  Yes - that log was from the zmq 4 run.
>>
>> Here's the hs_err_pid file from the 2.1.7 run:
>> # Problematic frame:
>> # C  [libzmq.so.1+0x19100]  zmq::i_inout::~i_inout()+0x10
>>
>> <snip>
>>
>> Stack: [0x00007f3a337d2000,0x00007f3a338d3000],  sp=0x00007f3a338d0f08,
>> free space=1019k
>>
>> Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native
>> code)
>>  C  [libzmq.so.1+0x19100]  zmq::i_inout::~i_inout()+0x10
>>
>>
>> Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
>> j  org.zeromq.ZMQ$Socket.setLongSockopt(IJ)V+0
>> j  org.zeromq.ZMQ$Socket.setLinger(J)V+17
>>
>>  Thanks,
>> Brian
>>
>>
>> On 01/03/2014 02:46 PM, Nathan Leung wrote:
>>
>> You shouldn't use a newer version of zmq, the API changed.  If you try a
>> newer version of storm you should try it with zmq 2.1.7 and the frozen
>> jzmq.  Is the log you posted from the zmq 4 run?  What does it look like
>> with zmq 2.1.7?
>>
>>
>> On Fri, Jan 3, 2014 at 1:56 PM, Brian C. Huffman <
>> bhuffman@etinternational.com> wrote:
>>
>>> All,
>>>
>>> I'm having trouble getting storm set up and submitting a topology. I've
>>> tried two different installs of storm and associated dependencies:  One
>>> using the older storm (0.8.1), zeromq (2.1.7) and jzmq (frozen for storm).
>>>  And then another using the newest of each: storm(0.9.0.1), zeromq (4.0.3),
>>> and latest jzmq master.
>>>
>>> Then I'm using the storm-starter package with the WordCountTopology
>>>
>>> Storm *appears* to be running fine.  I have one nimbus node and 3
>>> supervisors.  And the UI looks good.
>>>
>>> The topology submits fine:
>>> [storm@thor4 bin]$ ./storm jar
>>> /home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar
>>> storm.starter.WordCountTopology wc5
>>> Running: java -client -Dstorm.options=
>>> -Dstorm.home=/share/storm/storm-0.9.0.1
>>> -Djava.library.path=/share/storm/zeromq-4.0.3/lib:/share/storm/jzmq/lib:/usr/lib
>>> -Dstorm.conf.file= -cp
>>> /share/storm/storm-0.9.0.1/storm-netty-0.9.0.1.jar:/share/storm/storm-0.9.0.1/storm-console-logging-0.9.0.1.jar:/share/storm/storm-0.9.0.1/storm-core-0.9.0.1.jar:/share/storm/storm-0.9.0.1/lib/disruptor-2.10.1.jar:/share/storm/storm-0.9.0.1/lib/commons-exec-1.1.jar:/share/storm/storm-0.9.0.1/lib/jetty-6.1.26.jar:/share/storm/storm-
>>> 0.9.0.1/lib/math.numeric-
>>> tower-0.0.1.jar:/share/storm/storm-0.9.0.1/lib/logback-core-1.0.6.jar:/share/storm/storm-0.9.0.1/lib/curator-framework-1.0.1.jar:/share/storm/storm-0.9.0.1/lib/joda-time-2.0.jar:/share/storm/storm-0.9.0.1/lib/ring-jetty-adapter-0.3.11.jar:/share/storm/storm-0.9.0.1/lib/commons-io-1.4.jar:/share/storm/storm-0.9.0.1/lib/logback-classic-1.0.6.jar:/share/storm/storm-0.9.0.1/lib/asm-4.0.jar:/share/storm/storm-0.9.0.1/lib/tools.cli-0.2.2.jar:/share/storm/storm-0.9.0.1/lib/reflectasm-1.07-shaded.jar:/share/storm/storm-
>>> 0.9.0.1/lib/core.incubator-0
>>> .1.0.jar:/share/storm/storm-0.9.0.1/lib/clj-time-0.4.1.jar:/share/storm/storm-0.9.0.1/lib/minlog-1.2.jar:/share/storm/storm-0.9.0.1/lib/kryo-2.17.jar:/share/storm/storm-0.9.0.1/lib/log4j-over-slf4j-1.6.6.jar:/share/storm/storm-0.9.0.1/lib/netty-3.6.3.Final.jar:/share/storm/storm-0.9.0.1/lib/commons-codec-1.4.jar:/share/storm/storm-0.9.0.1/lib/clout-1.0.1.jar:/share/storm/storm-
>>> 0.9.0.1/lib/objenesis-1.2.jar
>>> :/share/storm/storm-0.9.0.1/lib/curator-client-1.0.1.jar:/share/storm/storm-0.9.0.1/lib/mockito-all-1.9.5.jar:/share/storm/storm-0.9.0.1/lib/servlet-api-2.5.jar:/share/storm/storm-0.9.0.1/lib/jzmq-2.1.0.jar:/share/storm/storm-
>>> 0.9.0.1/lib/json-simple-1.1
>>> .jar:/share/storm/storm-0.9.0.1/lib/guava-13.0.jar:/share/storm/storm-0.9.0.1/lib/libthrift7-0.7.0-2.jar:/share/storm/storm-0.9.0.1/lib/slf4j-api-1.6.5.jar:/share/storm/storm-0.9.0.1/lib/hiccup-0.3.6.jar:/share/storm/storm-0.9.0.1/lib/snakeyaml-1.11.jar:/share/storm/storm-0.9.0.1/lib/jetty-util-6.1.26.jar:/share/storm/storm-0.9.0.1/lib/ring-core-1.1.5.jar:/share/storm/storm-0.9.0.1/lib/ring-devel-0.3.11.jar:/share/storm/storm-
>>> 0.9.0.1/lib/servlet-api-2.5-
>>> 20081211.jar:/share/storm/storm-0.9.0.1/lib/jline-0.9.94.jar:/share/storm/storm-0.9.0.1/lib/commons-fileupload-1.2.1.jar:/share/storm/storm-0.9.0.1/lib/clojure-1.4.0.jar:/share/storm/storm-0.9.0.1/lib/tools.macro-0.1.0.jar:/share/storm/storm-0.9.0.1/lib/clj-stacktrace-0.2.2.jar:/share/storm/storm-0.9.0.1/lib/jgrapht-0.8.3.jar:/share/storm/storm-0.9.0.1/lib/ring-servlet-0.3.11.jar:/share/storm/storm-0.9.0.1/lib/compojure-1.1.3.jar:/share/storm/storm-0.9.0.1/lib/clojure-complete-0.2.3.jar:/share/storm/storm-0.9.0.1/lib/tools.logging-0.2.3.jar:/share/storm/storm-0.9.0.1/lib/commons-lang-2.5.jar:/share/storm/storm-0.9.0.1/lib/tools.nrepl-0.2.3.jar:/share/storm/storm-0.9.0.1/lib/httpclient-4.1.1.jar:/share/storm/storm-
>>> 0.9.0.1/lib/httpcore-4.1.jar:/share/storm/storm-0.9.0.1/lib/zookeeper-3.3.3.jar:/share/storm/storm-0.9.0.1/lib/carbonite-1.5.0.jar:/share/storm/storm-0.9.0.1/lib/commons-logging-1.1.1.jar:/share/storm/storm-0.9.0.1/lib/junit-3.8.1.jar:/home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar:/share/storm/storm-0.9.0.1/conf:/share/storm/storm-0.9.0.1/bin
>>> -Dstorm.jar=/home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar
>>> storm.starter.WordCountTopology wc5
>>> 375  [main] INFO  backtype.storm.StormSubmitter - Jar not uploaded to
>>> master yet. Submitting jar...
>>> 389  [main] INFO  backtype.storm.StormSubmitter - Uploading topology jar
>>> /home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar to
>>> assigned location:
>>> /usr/local/var/storm/nimbus/inbox/stormjar-e10a559a-59e8-4411-8cd3-c3b6e6c16bc9.jar
>>> 410  [main] INFO  backtype.storm.StormSubmitter - Successfully uploaded
>>> topology jar to assigned location:
>>> /usr/local/var/storm/nimbus/inbox/stormjar-e10a559a-59e8-4411-8cd3-c3b6e6c16bc9.jar
>>> 411  [main] INFO  backtype.storm.StormSubmitter - Submitting topology
>>> wc5 in distributed mode with conf
>>> {"topology.workers":3,"topology.debug":true}
>>> 846  [main] INFO  backtype.storm.StormSubmitter - Finished submitting
>>> topology: wc5
>>>
>>>
>>> However, it's segfaulting.  I see many hs_err_pid files with the
>>> following content:
>>> # Problematic frame:
>>> # C  [libzmq.so.3+0x28510]  zmq::signaler_t::signaler_t()+0x30
>>>
>>> <snip>
>>>
>>> Stack: [0x00007f945ac1c000,0x00007f945ad1d000], sp=0x00007f945ad1aed8,
>>>  free space=1019k
>>> Native frames: (J=compiled Java code, j=interpreted, Vv=VM code,
>>> C=native code)
>>> C  [libzmq.so.3+0x28510]  zmq::signaler_t::signaler_t()+0x30
>>>
>>> Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
>>> j  org.zeromq.ZMQ$Socket.setLongSockopt(IJ)V+0
>>> j  org.zeromq.ZMQ$Socket.setLinger(J)V+17
>>>
>>> I've spent a few hours troubleshooting but just can't find a solution.
>>>  Can any one make suggestions on what might be wrong?
>>>
>>> Thanks,
>>> Brian
>>>
>>>
>>>
>>>
>>
>>
>
>

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