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From "Brian C. Huffman" <bhuff...@etinternational.com>
Subject Segfault in worker when submitting topology
Date Fri, 03 Jan 2014 18:56:21 GMT
All,

I'm having trouble getting storm set up and submitting a topology. I've 
tried two different installs of storm and associated dependencies:  One 
using the older storm (0.8.1), zeromq (2.1.7) and jzmq (frozen for 
storm).  And then another using the newest of each: storm(0.9.0.1), 
zeromq (4.0.3), and latest jzmq master.

Then I'm using the storm-starter package with the WordCountTopology

Storm *appears* to be running fine.  I have one nimbus node and 3 
supervisors.  And the UI looks good.

The topology submits fine:
[storm@thor4 bin]$ ./storm jar 
/home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar 
storm.starter.WordCountTopology wc5
Running: java -client -Dstorm.options= 
-Dstorm.home=/share/storm/storm-0.9.0.1 
-Djava.library.path=/share/storm/zeromq-4.0.3/lib:/share/storm/jzmq/lib:/usr/lib 
-Dstorm.conf.file= -cp 
/share/storm/storm-0.9.0.1/storm-netty-0.9.0.1.jar:/share/storm/storm-0.9.0.1/storm-console-logging-0.9.0.1.jar:/share/storm/storm-0.9.0.1/storm-core-0.9.0.1.jar:/share/storm/storm-0.9.0.1/lib/disruptor-2.10.1.jar:/share/storm/storm-0.9.0.1/lib/commons-exec-1.1.jar:/share/storm/storm-0.9.0.1/lib/jetty-6.1.26.jar:/share/storm/storm-0.9.0.1/lib/math.numeric-tower-0.0.1.jar:/share/storm/storm-0.9.0.1/lib/logback-core-1.0.6.jar:/share/storm/storm-0.9.0.1/lib/curator-framework-1.0.1.jar:/share/storm/storm-0.9.0.1/lib/joda-time-2.0.jar:/share/storm/storm-0.9.0.1/lib/ring-jetty-adapter-0.3.11.jar:/share/storm/storm-0.9.0.1/lib/commons-io-1.4.jar:/share/storm/storm-0.9.0.1/lib/logback-classic-1.0.6.jar:/share/storm/storm-0.9.0.1/lib/asm-4.0.jar:/share/storm/storm-0.9.0.1/lib/tools.cli-0.2.2.jar:/share/storm/storm-0.9.0.1/lib/reflectasm-1.07-shaded.jar:/share/storm/storm-0.9.0.1/lib/core.incubator-0.1.0.jar:/share/storm/storm-0.9.0.1/lib/clj-time-0.4.1.jar:/share/storm/storm-0.9.0.1/lib/minlog-1.2.jar:/share/storm/storm-0.9.0.1/lib/kryo-2.17.jar:/share/storm/storm-0.9.0.1/lib/log4j-over-slf4j-1.6.6.jar:/share/storm/storm-0.9.0.1/lib/netty-3.6.3.Final.jar:/share/storm/storm-0.9.0.1/lib/commons-codec-1.4.jar:/share/storm/storm-0.9.0.1/lib/clout-1.0.1.jar:/share/storm/storm-0.9.0.1/lib/objenesis-1.2.jar:/share/storm/storm-0.9.0.1/lib/curator-client-1.0.1.jar:/share/storm/storm-0.9.0.1/lib/mockito-all-1.9.5.jar:/share/storm/storm-0.9.0.1/lib/servlet-api-2.5.jar:/share/storm/storm-0.9.0.1/lib/jzmq-2.1.0.jar:/share/storm/storm-0.9.0.1/lib/json-simple-1.1.jar:/share/storm/storm-0.9.0.1/lib/guava-13.0.jar:/share/storm/storm-0.9.0.1/lib/libthrift7-0.7.0-2.jar:/share/storm/storm-0.9.0.1/lib/slf4j-api-1.6.5.jar:/share/storm/storm-0.9.0.1/lib/hiccup-0.3.6.jar:/share/storm/storm-0.9.0.1/lib/snakeyaml-1.11.jar:/share/storm/storm-0.9.0.1/lib/jetty-util-6.1.26.jar:/share/storm/storm-0.9.0.1/lib/ring-core-1.1.5.jar:/share/storm/storm-0.9.0.1/lib/ring-devel-0.3.11.jar:/share/storm/storm-0.9.0.1/lib/servlet-api-2.5-20081211.jar:/share/storm/storm-0.9.0.1/lib/jline-0.9.94.jar:/share/storm/storm-0.9.0.1/lib/commons-fileupload-1.2.1.jar:/share/storm/storm-0.9.0.1/lib/clojure-1.4.0.jar:/share/storm/storm-0.9.0.1/lib/tools.macro-0.1.0.jar:/share/storm/storm-0.9.0.1/lib/clj-stacktrace-0.2.2.jar:/share/storm/storm-0.9.0.1/lib/jgrapht-0.8.3.jar:/share/storm/storm-0.9.0.1/lib/ring-servlet-0.3.11.jar:/share/storm/storm-0.9.0.1/lib/compojure-1.1.3.jar:/share/storm/storm-0.9.0.1/lib/clojure-complete-0.2.3.jar:/share/storm/storm-0.9.0.1/lib/tools.logging-0.2.3.jar:/share/storm/storm-0.9.0.1/lib/commons-lang-2.5.jar:/share/storm/storm-0.9.0.1/lib/tools.nrepl-0.2.3.jar:/share/storm/storm-0.9.0.1/lib/httpclient-4.1.1.jar:/share/storm/storm-0.9.0.1/lib/httpcore-4.1.jar:/share/storm/storm-0.9.0.1/lib/zookeeper-3.3.3.jar:/share/storm/storm-0.9.0.1/lib/carbonite-1.5.0.jar:/share/storm/storm-0.9.0.1/lib/commons-logging-1.1.1.jar:/share/storm/storm-0.9.0.1/lib/junit-3.8.1.jar:/home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar:/share/storm/storm-0.9.0.1/conf:/share/storm/storm-0.9.0.1/bin

-Dstorm.jar=/home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar 
storm.starter.WordCountTopology wc5
375  [main] INFO  backtype.storm.StormSubmitter - Jar not uploaded to 
master yet. Submitting jar...
389  [main] INFO  backtype.storm.StormSubmitter - Uploading topology jar 
/home/storm/storm-starter/target/storm-starter-0.0.1-SNAPSHOT.jar to 
assigned location: 
/usr/local/var/storm/nimbus/inbox/stormjar-e10a559a-59e8-4411-8cd3-c3b6e6c16bc9.jar
410  [main] INFO  backtype.storm.StormSubmitter - Successfully uploaded 
topology jar to assigned location: 
/usr/local/var/storm/nimbus/inbox/stormjar-e10a559a-59e8-4411-8cd3-c3b6e6c16bc9.jar
411  [main] INFO  backtype.storm.StormSubmitter - Submitting topology 
wc5 in distributed mode with conf 
{"topology.workers":3,"topology.debug":true}
846  [main] INFO  backtype.storm.StormSubmitter - Finished submitting 
topology: wc5


However, it's segfaulting.  I see many hs_err_pid files with the 
following content:
# Problematic frame:
# C  [libzmq.so.3+0x28510]  zmq::signaler_t::signaler_t()+0x30

<snip>

Stack: [0x00007f945ac1c000,0x00007f945ad1d000], sp=0x00007f945ad1aed8,  
free space=1019k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, 
C=native code)
C  [libzmq.so.3+0x28510]  zmq::signaler_t::signaler_t()+0x30

Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j  org.zeromq.ZMQ$Socket.setLongSockopt(IJ)V+0
j  org.zeromq.ZMQ$Socket.setLinger(J)V+17

I've spent a few hours troubleshooting but just can't find a solution.  
Can any one make suggestions on what might be wrong?

Thanks,
Brian




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