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From Peter Klügl <peter.klu...@averbis.com>
Subject Re: Problem running UIMA Ruta ExampleProject
Date Tue, 16 Apr 2019 12:30:13 GMT
Oh no.


I actually have thought of this, but I would expected a completely
different error as other users reported already.


Sorry for the inconveniences. There is already a ticket for solving this
problem for good.


Best,


Peter


Am 16.04.2019 um 13:55 schrieb Nikolai Krot:
> Hi Peter,
>
> An update: I have experimented with Eclipse and now I tend to believe that
> what made the ExampleProject work is
> * not compiling ruta-2.7.0 and setting UIMA_HOME variable to point to it;
> * but rather running [UIMA Ruta/Update project] on the project.
>
> Please consider this issue solved.
>
> Best regards,
> Nikolai
>
> On Tue, Apr 16, 2019 at 9:11 AM Peter Klügl <peter.kluegl@averbis.com>
> wrote:
>
>> Hi,
>>
>>
>> hmm strange, that should not be necessary and I do not know why it has
>> any influence at all.
>>
>> I'll try to reproduce your problem anyway. Maybe I find the source of
>> the problem in Ruta.
>>
>>
>> Best,
>>
>>
>> Peter
>>
>>
>> Am 15.04.2019 um 22:29 schrieb Nikolai Krot:
>>> Hi Peter,
>>>
>>> Finally, things started to work. Though I can not tell why exactly.
>>> Retrospectively, i would guess it happened once I compiled the stuff in
>>> ruta-2.7.0 directory and set UIMA_HOME variable. Not sure nor willing to
>>> investigate it.
>>>
>>> I think this page
>>>
>> https://uima.apache.org/d/ruta-current/tools.ruta.book.html#section.ugr.tools.ruta.workbench.install
>>> does not mention it but I remember reading something somewhere else...
>>>
>>> Best regards,
>>> Nikolai
>>>
>>>
>>>
>>> On Mon, Apr 15, 2019 at 1:54 PM Peter Klügl <peter.kluegl@averbis.com>
>>> wrote:
>>>
>>>> Hi,
>>>>
>>>>
>>>> I tested it with Windows 10, Eclipse 4.8, Java 8.
>>>>
>>>>
>>>> I'll take a closer look at it the next days.
>>>>
>>>>
>>>> Best,
>>>>
>>>>
>>>> Peter
>>>>
>>>>
>>>> Am 13.04.2019 um 10:58 schrieb Nikolai Krot:
>>>>> Hi Peter,
>>>>>
>>>>> Thanks for supporting me :) This is what I tried on Ubuntu 18.04,
>>>>> unfortunately to no avail:
>>>>>
>>>>> 1) i have deleted the configuration and launched the Main.ruta script
>>>>> directly. I have the following
>>>>>
>>>>> Error occurred during initialization of boot layer
>>>>>> java.lang.LayerInstantiationException: Package
>>>>>> jdk.internal.jimage.decompressor in both module jrt.fs and module
>>>> java.base
>>>>> 2) then i have edited the configuration that was created by running
>> step
>>>> 1,
>>>>> changing the following
>>>>>   Tab JRE -> set Alternate JRE to point to java-8-openjdk-amd64
>>>>>
>>>>> Exception in thread "main" java.lang.IllegalArgumentException: Value
>> for
>>>>>> descriptor is missing - Arguments: [descriptor, null, inputFolder,
>>>>>>
>> %2Fhome%2Fkrot%2Feclipse-other%2Fruta-2.7.0%2Fexample-projects%2FExampleProject%2Finput,
>>>>>> outputFolder,
>>>>>>
>> %2Fhome%2Fkrot%2Feclipse-other%2Fruta-2.7.0%2Fexample-projects%2FExampleProject%2Foutput,
>>>>>> mode, run, encoding, UTF-8, view, _InitialView, inputRecursive, false,
>>>>>> addsdi, false, serialFormat, XMI]
>>>>>>     at
>>>>>>
>> org.apache.uima.ruta.ide.launching.RutaLauncher.throwException(RutaLauncher.java:172)
>>>>>>     at
>>>>>>
>> org.apache.uima.ruta.ide.launching.RutaLauncher.parseCmdLineArgs(RutaLauncher.java:111)
>>>>>>     at
>>>>>>
>> org.apache.uima.ruta.ide.launching.RutaLauncher.main(RutaLauncher.java:176)
>>>>> this looks  like something very basic related to environment
>>>> configuration,
>>>>> but as being non-java guy, i can not solve it.
>>>>>
>>>>> If ExampleProject works for you, could you share your setup: OS,
>> eclipse
>>>>> version, JDK, etc whatever is relevant?
>>>>>
>>>>> Best regards,
>>>>> Nikolai
>>>>>
>>>>> On Tue, Apr 9, 2019 at 3:27 PM Peter Klügl <pkluegl@gmail.com>
wrote:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>>
>>>>>> hmm, I think I have to try to reproduce it...
>>>>>>
>>>>>>
>>>>>> Can you try it with Java 8? There is an option in the launch config.
>>>>>>
>>>>>> Can you delete the old launch config and try to launch the script
>>>>>> directly: Open the script in the Editor and simply press the Run
>> button
>>>>>> without selecting anything?
>>>>>>
>>>>>>
>>>>>> Best,
>>>>>>
>>>>>>
>>>>>> Peter
>>>>>>
>>>>>>
>>>>>> Am 09.04.2019 um 14:46 schrieb Nikolai Krot:
>>>>>>> Hallo Peter,
>>>>>>>
>>>>>>> Thank you for your prompt reply.
>>>>>>>
>>>>>>> As recommended, I tried Photon (4.8.0), this time on Ubuntu 18.04
>>>>>>> (openjdk-11), everything from the official repository. I applied
the
>>>> same
>>>>>>> steps as before, except
>>>>>>>
>>>>>>> 5) in Eclipse, go to ExampleProject/input/Example1.txt, right
click,
>>>>>> select
>>>>>>> [Debug As]. There is no ready configuration, so i created one.
Well,
>>>> the
>>>>>>> only thing I did was pointing Launch script to Main.ruta.
>>>>>>>
>>>>>>> The error now is different, "Cannot connect to VM, socket closed".
>>>> When I
>>>>>>> just [Run as], the error pops up
>>>>>>>
>>>>>>> Error occurred during initialization of boot layer
>>>>>>>> java.lang.LayerInstantiationException: Package
>>>>>>>> jdk.internal.jimage.decompressor in both module jrt.fs and
module
>>>>>> java.base
>>>>>>>  looks like something really wrong.. I know this is not related
to
>> UIMA
>>>>>>> Ruta, but perhaps you could provide me with further advice on
that?
>>>>>>>
>>>>>>> Best regards,
>>>>>>> Nikolai
>>>>>>>
>>>>>>> On Mon, Apr 8, 2019 at 10:15 AM Peter Klügl <
>> peter.kluegl@averbis.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi,
>>>>>>>>
>>>>>>>>
>>>>>>>> there are some known issue with the latest Eclipse version.
Can you
>>>> try
>>>>>>>> it with Eclipse Photon (4.8.0)?
>>>>>>>>
>>>>>>>> Is there more Stacktrace output? If yes, can you add it too?
>>>>>>>>
>>>>>>>>
>>>>>>>> BEst,
>>>>>>>>
>>>>>>>>
>>>>>>>> Peter
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> Am 07.04.2019 um 15:36 schrieb Nikolai Krot:
>>>>>>>>> Hi all,
>>>>>>>>>
>>>>>>>>> I am trying out UIMA Ruta and having hard times figuring
out how to
>>>> run
>>>>>>>>> ExampleProject. I am not a Java guy and at this point
feel already
>>>>>>>>> frustrated with abundant documentation.
>>>>>>>>>
>>>>>>>>> My steps so far have been to:
>>>>>>>>>
>>>>>>>>> 1) install Eclipse Version: 2019-03 (4.11.0) on Debian
Linux
>>>>>>>>> 2) install UIMA Ruta plugin from
>>>>>>>>> http://www.apache.org/dist/uima/eclipse-update-site (via
elipse
>> menu
>>>>>>>>> [Install New Software])
>>>>>>>>> 3) download und unpack source distribution of UIMA Ruta
2.7.0
>> (found
>>>> at
>>>>>>>>> http://uima.apache.org/downloads.cgi#Latest%20Official%20Releases)
>>>>>>>>> 4) start eclipse and import ExampleProject from the distribution
>>>>>>>> downloaded
>>>>>>>>> in step 3)
>>>>>>>>> 5) in Eclipse, go to ExampleProject/input/Example1.txt,
right
>> click,
>>>>>>>> select
>>>>>>>>> [Debug As], then in Debug Configurations there is already
>> Main.ruta,
>>>> i
>>>>>>>>> simply choose it and click Debug button.
>>>>>>>>>
>>>>>>>>> As a result, I get an error Source not found. This is
the stack:
>>>>>>>>>
>>>>>>>>> org.apache.uima.ruta.ide.launching.RutaLauncher at localhost:43931
>>>>>>>>>>     Thread [main] (Suspended (exception
>>>>>>>>>> AnalysisEngineProcessException))
>>>>>>>>>>         PrimitiveAnalysisEngine_impl.innerCall(CAS)
line: 336
>>>>>>>>>>         PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(CAS)
>>>>>> line:
>>>>>>>>>> 321
>>>>>>>>>>
>>>>>>>>  PrimitiveAnalysisEngine_impl(AnalysisEngineImplBase).process(CAS)
>>>>>>>>>> line: 269
>>>>>>>>>>         RutaLauncher.processFile(File, AnalysisEngine,
CAS) line:
>>>> 242
>>>>>>>>>>         RutaLauncher.main(String[]) line: 191
>>>>>>>>>>
>>>>>>>>> Could you please help me understand what is wrong? What
am I
>> missing?
>>>>>>>>> Please bare with a non-Java guy if I am asking a really
>>>>>> basic/stupid/etc
>>>>>>>>> question.
>>>>>>>>>
>>>>>>>>> Thank you in advance
>>>>>>>>> Nikolai
>>>>>>>>>
>>>>>>>> --
>>>>>>>> Dr. Peter Klügl
>>>>>>>> R&D Text Mining/Machine Learning
>>>>>>>>
>>>>>>>> Averbis GmbH
>>>>>>>> Salzstr. 15
>>>>>>>> 79098 Freiburg
>>>>>>>> Germany
>>>>>>>>
>>>>>>>> Fon: +49 761 708 394 0
>>>>>>>> Fax: +49 761 708 394 10
>>>>>>>> Email: peter.kluegl@averbis.com
>>>>>>>> Web: https://averbis.com
>>>>>>>>
>>>>>>>> Headquarters: Freiburg im Breisgau
>>>>>>>> Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
>>>>>>>> Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél
Markó
>>>>>>>>
>>>>>>>>
>>>> --
>>>> Dr. Peter Klügl
>>>> R&D Text Mining/Machine Learning
>>>>
>>>> Averbis GmbH
>>>> Salzstr. 15
>>>> 79098 Freiburg
>>>> Germany
>>>>
>>>> Fon: +49 761 708 394 0
>>>> Fax: +49 761 708 394 10
>>>> Email: peter.kluegl@averbis.com
>>>> Web: https://averbis.com
>>>>
>>>> Headquarters: Freiburg im Breisgau
>>>> Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
>>>> Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél Markó
>>>>
>>>>
>> --
>> Dr. Peter Klügl
>> R&D Text Mining/Machine Learning
>>
>> Averbis GmbH
>> Salzstr. 15
>> 79098 Freiburg
>> Germany
>>
>> Fon: +49 761 708 394 0
>> Fax: +49 761 708 394 10
>> Email: peter.kluegl@averbis.com
>> Web: https://averbis.com
>>
>> Headquarters: Freiburg im Breisgau
>> Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
>> Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél Markó
>>
>>
-- 
Dr. Peter Klügl
R&D Text Mining/Machine Learning

Averbis GmbH
Salzstr. 15
79098 Freiburg
Germany

Fon: +49 761 708 394 0
Fax: +49 761 708 394 10
Email: peter.kluegl@averbis.com
Web: https://averbis.com

Headquarters: Freiburg im Breisgau
Register Court: Amtsgericht Freiburg im Breisgau, HRB 701080
Managing Directors: Dr. med. Philipp Daumke, Dr. Kornél Markó


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