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From Fatima Zulifqar <fatimazulifqar...@gmail.com>
Subject Fwd: Exception: UIMA - Annotator Processing Failed
Date Wed, 28 Feb 2018 06:33:05 GMT
Dear,

I am facing the following issue while running an open source project which
is based upon uima framework. I didn't find any solution concerned yet.

*Feb 27, 2018 11:57:39 AM
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl
callAnalysisComponentProcess(417)*
*SEVERE: Exception occurred*
*org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator
processing failed.    *
* at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:401)*
* at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:308)*
* at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:269)*
* at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:284)*
* at edu.cmu.lti.oaqa.ecd.phase.BasePhase$1.run(BasePhase.java:226)*
* at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)*
* at java.util.concurrent.FutureTask.run(FutureTask.java:266)*
* at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)*
* at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)*
* at java.lang.Thread.run(Thread.java:748)*
*Caused by: org.apache.uima.cas.CASRuntimeException: Error - the Annotation
"#1 ConceptMention
"ptv.http://www.ncbi.nlm.nih.gov/pubmed/21631649/abstract/756/abstract/1073
<http://www.ncbi.nlm.nih.gov/pubmed/21631649/abstract/756/abstract/1073>"*
*   sofa:
ptv.http://www.ncbi.nlm.nih.gov/pubmed/21631649/abstract/756/abstract/1073
<http://www.ncbi.nlm.nih.gov/pubmed/21631649/abstract/756/abstract/1073>*
*   begin: 223*
*   end: 232*
*   concept: #0 Concept*
*      names: NonEmptyStringList*
*         head: "anti gq1b"*
*         tail: EmptyStringList*
*      uris: EmptyStringList*
*      ids: EmptyStringList*
*      mentions: NonEmptyFSList*
*         head: ConceptMention*
*            sofa:
ptv.http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/1131/abstract/1299
<http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/1131/abstract/1299>*
*            begin: 32*
*            end: 41*
*            concept: #0*
*            matchedName: "anti-GQ1b"*
*            score: NaN*
*         tail: NonEmptyFSList*
*            head: #1*
*            tail: NonEmptyFSList*
*               head: ConceptMention*
*                  sofa:
ptv.http://www.ncbi.nlm.nih.gov/pubmed/23927937/abstract/303/abstract/503
<http://www.ncbi.nlm.nih.gov/pubmed/23927937/abstract/303/abstract/503>*
*                  begin: 179*
*                  end: 188*
*                  concept: #0*
*                  matchedName: "anti-GQ1b"*
*                  score: NaN*
*               tail: NonEmptyFSList*
*                  head: ConceptMention*
*                     sofa:
ptv.http://www.ncbi.nlm.nih.gov/pubmed/19664367/abstract/0/abstract/330
<http://www.ncbi.nlm.nih.gov/pubmed/19664367/abstract/0/abstract/330>*
*                     begin: 40*
*                     end: 49*
*                     concept: #0*
*                     matchedName: "anti-GQ1b"*
*                     score: NaN*
*                  tail: NonEmptyFSList*
*                     head: ConceptMention*
*                        sofa:
ptv.http://www.ncbi.nlm.nih.gov/pubmed/25379047/abstract/140/abstract/406
<http://www.ncbi.nlm.nih.gov/pubmed/25379047/abstract/140/abstract/406>*
*                        begin: 133*
*                        end: 142*
*                        concept: #0*
*                        matchedName: "anti-GQ1b"*
*                        score: NaN*
*                     tail: NonEmptyFSList*
*                        head: ConceptMention*
*                           sofa:
ptv.http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/189/abstract/386
<http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/189/abstract/386>*
*                           begin: 3*
*                           end: 12*
*                           concept: #0*
*                           matchedName: "anti-GQ1b"*
*                           score: NaN*
*                        tail: NonEmptyFSList*
*                           head: ConceptMention*
*                              sofa:
ptv.http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/189/abstract/386
<http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/189/abstract/386>*
*                              begin: 178*
*                              end: 187*
*                              concept: #0*
*                              matchedName: "anti-GQ1b"*
*                              score: NaN*
*                           tail: EmptyFSList*
*      types: NonEmptyFSList*
*         head: ConceptType*
*            id: <null>*
*            name: "frequent-phrase"*
*            abbreviation: "frequent-phrase"*
*         tail: EmptyFSList*
*   matchedName: "anti-GQ1b"*
*   score: NaN*
*" is over view
"ptv.http://www.ncbi.nlm.nih.gov/pubmed/21631649/abstract/756/abstract/1073
<http://www.ncbi.nlm.nih.gov/pubmed/21631649/abstract/756/abstract/1073>"
and cannot be added to indexes associated with the different view
"ptv.http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/1131/abstract/1299
<http://www.ncbi.nlm.nih.gov/pubmed/22698187/abstract/1131/abstract/1299>".*
* at
org.apache.uima.cas.impl.FSIndexRepositoryImpl.ll_addFS_common(FSIndexRepositoryImpl.java:2784)*
* at
org.apache.uima.cas.impl.FSIndexRepositoryImpl.ll_addFS(FSIndexRepositoryImpl.java:2763)*
* at
org.apache.uima.cas.impl.FSIndexRepositoryImpl.addFS(FSIndexRepositoryImpl.java:2068)*
* at
org.apache.uima.cas.impl.FSIndexRepositoryImpl.addFS(FSIndexRepositoryImpl.java:2674)*
* at org.apache.uima.cas.impl.CASImpl.addFsToIndexes(CASImpl.java:4852)*
* at org.apache.uima.jcas.cas.TOP.addToIndexes(TOP.java:126)*
* at org.apache.uima.jcas.cas.TOP.addToIndexes(TOP.java:118)*
* at
java.util.stream.ForEachOps$ForEachOp$OfRef.accept(ForEachOps.java:184)*
* at
java.util.Spliterators$ArraySpliterator.forEachRemaining(Spliterators.java:948)*
* at
java.util.stream.ReferencePipeline$Head.forEach(ReferencePipeline.java:580)*
* at
java.util.stream.ReferencePipeline$7$1.accept(ReferencePipeline.java:270)*
* at
java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)*
* at
java.util.ArrayList$ArrayListSpliterator.forEachRemaining(ArrayList.java:1380)*
* at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:481)*
* at
java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:471)*
* at
java.util.stream.ForEachOps$ForEachOp.evaluateSequential(ForEachOps.java:151)*
* at
java.util.stream.ForEachOps$ForEachOp$OfRef.evaluateSequential(ForEachOps.java:174)*
* at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)*
* at java.util.stream.ReferencePipeline.forEach(ReferencePipeline.java:418)*
* at
edu.cmu.lti.oaqa.baseqa.evidence.concept.PassageConceptRecognizer.process(PassageConceptRecognizer.java:96)*
* at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.pr
<http://nent.JCasAnnotator_ImplBase.pr>ocess(JCasAnnotator_ImplBase.java:48)*
* at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)*
* ... 9 more*

Kindly help me regarding this exception as soon as possible. I will be
really grateful to you for this help.

*--*
*Fatima Zulifqar*

*Computer Science Department Graduated form UET, Lahore*
*Internee at Data Science Research Lab, Al-Khawarizmi Institute of Computer
Science (KICS),  UET, Lahore*

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