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From Richard Eckart de Castilho <...@apache.org>
Subject Re: No sofaFS for specified sofaRef found
Date Sat, 07 May 2016 13:46:25 GMT
Were you using a CasCopier for the generation of this XMI?

Cheers,

-- Richard

> On 07.05.2016, at 00:30, Pablo N. Mendes <pablomendes@gmail.com> wrote:
> 
> Folks,
> I am getting "No sofaFS for specified sofaRef found" while trying to
> deserialize an XMI. I found the message a bit cryptic and didn't find much
> help on the lazyweb, so I bit the bullet and spent a few hours poking
> around. It seems to be a missing "sofa" attribute. If the sofa attribute
> has the wrong value, then you get "xmi id <id> is referenced but not
> defined" which is very nice and clear. But if you omit the sofa attribute
> you get "No sofaFS for specified sofaRef found" which is less informative
> IMHO.
> 
> Extra info below.
> 
> Cheers,
> Pablo
> 
> $ diff cas1.xmi cas2.xmi
> 9c9
> < <ls:DocumentMetadata xmi:id="18" sofa="1" source="file001.txt"
> documentId="001"/>
> ---
>> <ls:DocumentMetadata xmi:id="18" source="file001.txt" documentId="001"/>
> 
> 
> 
> 
> VERSIONS
> 
>    <uima.version>2.8.1</uima.version>
>    <uimafit.version>2.1.0</uimafit.version>
> 
> JAVA CODE SNIPPET
> 
> org.apache.uima.util.XmlCasDeserializer.deserialize(inputStream,
> jCas.getCas());
> 
> STACK TRACE
> 
> Exception in thread "main" org.apache.uima.cas.CASRuntimeException: No
> sofaFS for specified sofaRef found.
> at org.apache.uima.cas.impl.CASImpl.getSofa(CASImpl.java:806)
> at
> org.apache.uima.cas.impl.FSIndexRepositoryImpl.ll_addFS_common(FSIndexRepositoryImpl.java:2781)
> at
> org.apache.uima.cas.impl.FSIndexRepositoryImpl.ll_addFS(FSIndexRepositoryImpl.java:2763)
> at
> org.apache.uima.cas.impl.FSIndexRepositoryImpl.addFS(FSIndexRepositoryImpl.java:2068)
> at
> org.apache.uima.cas.impl.XmiCasDeserializer$XmiCasDeserializerHandler.endDocument(XmiCasDeserializer.java:1486)
> at
> org.apache.uima.util.XmlCasDeserializer$XmlCasDeserializerHandler.endDocument(XmlCasDeserializer.java:127)
> at org.apache.xerces.parsers.AbstractSAXParser.endDocument(Unknown Source)
> at org.apache.xerces.impl.XMLDocumentScannerImpl.endEntity(Unknown Source)
> at org.apache.xerces.impl.XMLEntityManager.endEntity(Unknown Source)
> at org.apache.xerces.impl.XMLEntityScanner.load(Unknown Source)
> at org.apache.xerces.impl.XMLEntityScanner.skipSpaces(Unknown Source)
> at
> org.apache.xerces.impl.XMLDocumentScannerImpl$TrailingMiscDispatcher.dispatch(Unknown
> Source)
> at
> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
> Source)
> at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
> at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
> at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
> at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
> at
> org.apache.uima.util.XmlCasDeserializer.deserialize(XmlCasDeserializer.java:83)
> at
> org.apache.uima.util.XmlCasDeserializer.deserialize(XmlCasDeserializer.java:58)
> ...
> 
> 
> CAS1.xmi
> 
> <?xml version="1.0" encoding="UTF-8"?>
> <xmi:XMI
> xmlns:cas="http:///uima/cas.ecore"
> xmlns:tcas="http:///uima/tcas.ecore"
> xmlns:xmi="http://www.omg.org/XMI"
> xmlns:ls="http:///com/example.ecore"
> xmi:version="2.0">
> <cas:NULL xmi:id="0"/>
> <ls:DocumentMetadata xmi:id="18" sofa="1" source="file001.txt"
> documentId="001"/>
> <cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text"
> sofaString="This is a test."/>
> <cas:View sofa="1" members="18"/>
> </xmi:XMI>
> 
> 
> CAS2.xmi
> 
> <?xml version="1.0" encoding="UTF-8"?>
> <xmi:XMI
> xmlns:cas="http:///uima/cas.ecore"
> xmlns:tcas="http:///uima/tcas.ecore"
> xmlns:xmi="http://www.omg.org/XMI"
> xmlns:ls="http:///com/example.ecore"
> xmi:version="2.0">
> <cas:NULL xmi:id="0"/>
> <ls:DocumentMetadata xmi:id="18" source="file001.txt" documentId="001"/>
> <cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text"
> sofaString="This is a test."/>
> <cas:View sofa="1" members="18"/>
> </xmi:XMI>
> 
> 
> TYPESYSTEM
> 
> <?xml version="1.0" encoding="UTF-8" ?>
> 
> <typeSystemDescription  xmlns="http://uima.apache.org/resourceSpecifier">
>        <name>ExampleTypeSystem</name>
>        <description>Just an example</description>
>        <vendor>example.com</vendor>
>        <version>1.0</version>
>        <types>
>                <typeDescription>
>                        <name>com.example.DocumentMetadata</name>
>                        <description></description>
> 
> <supertypeName>uima.tcas.DocumentAnnotation</supertypeName>
>                        <features>
>                                <featureDescription>
>                                        <name>source</name>
>                                        <description>Source</description>
> 
> <rangeTypeName>uima.cas.String</rangeTypeName>
>                                </featureDescription>
>                                <featureDescription>
>                                        <name>documentId</name>
>                                        <description>Source</description>
> 
> <rangeTypeName>uima.cas.String</rangeTypeName>
>                                </featureDescription>
>                        </features>
>                </typeDescription>
> 
>        </types>
> </typeSystemDescription>
> 
> 
> -- 
> Pablo N. Mendes
> http://pablomendes.com


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