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To: uima-user@incubator.apache.org
From: Kai Schlamp <schlamp@gmx.de>
Subject: Re: Reuse serialized XMI CAS in a dynamic application.
Date: Wed, 17 Jun 2009 00:15:15 +0200
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Hi Thilo,

thanks for your help.
I tried it the way you suggested. I just tested it with one type system. And if I use my type system 
description directly instead of the serialized/deserialized type system it works fine.
But when I use the deserialized type system (serialized by your mentioned TypeSystem2Xml) to 
deserialize the CAS I get a CASAdminException.
Below is the Exception, the original type system description, the serialized type description via 
TypeSystem2Xml, and a little serialized CAS test case.
Do you have an idea why this Exception occurs?

The Exception:
CASAdminException: Can't derive from type "uima.cas.FSArray" since it is inheritance final.
	at org.apache.uima.cas.impl.TypeSystemImpl.addType(TypeSystemImpl.java:581)
	at org.apache.uima.util.CasCreationUtils.setupTypeSystem(CasCreationUtils.java:733)
	at org.apache.uima.util.CasCreationUtils.doCreateCas(CasCreationUtils.java:590)
	at org.apache.uima.util.CasCreationUtils.createCas(CasCreationUtils.java:352)
	at org.apache.uima.util.CasCreationUtils.createCas(CasCreationUtils.java:304)
	at org.pubcurator.uima.utils.FullCasDeserializer.deserialize(FullCasDeserializer.java:56)
	at org.pubcurator.uima.utils.FullCasDeserializerTest.testDeserialize(FullCasDeserializerTest.java:36)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:73)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:46)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:180)
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:41)
	at org.junit.runners.ParentRunner$1.evaluate(ParentRunner.java:173)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
	at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:220)
	at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:46)
	at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38)
	at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467)
	at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683)
	at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390)
	at org.eclipse.pde.internal.junit.runtime.RemotePluginTestRunner.main(RemotePluginTestRunner.java:62)
	at org.eclipse.pde.internal.junit.runtime.CoreTestApplication.run(CoreTestApplication.java:23)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at 
org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:574)
	at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
	at 
org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
	at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
	at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:368)
	at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:559)
	at org.eclipse.equinox.launcher.Main.basicRun(Main.java:514)
	at org.eclipse.equinox.launcher.Main.run(Main.java:1311)
	at org.eclipse.equinox.launcher.Main.main(Main.java:1287)



Orignial Type System Description:

<?xml version="1.0" encoding="UTF-8"?>
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
   <name>PubCurator TypeSystem</name>
   <description>This is the type system that PubCurator uses for data representation.
All analysis engines used in PubCurator must output this type system.</description>
   <version>1.0</version>
   <vendor>PubCurator</vendor>
   <types>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubAnnotation</name>
       <description/>
       <supertypeName>uima.tcas.Annotation</supertypeName>
       <features>
         <featureDescription>
           <name>annotator</name>
           <description/>
           <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>score</name>
           <description/>
           <rangeTypeName>uima.cas.Integer</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>identifiers</name>
           <description/>
           <rangeTypeName>uima.cas.FSArray</rangeTypeName>
           <elementType>org.pubcurator.uima.ts.PubIdentifier</elementType>
         </featureDescription>
         <featureDescription>
           <name>spans</name>
           <description>One item for example can be devided in multiple spans. For example, the 
phrase "</description>
           <rangeTypeName>uima.cas.FSArray</rangeTypeName>
           <elementType>org.pubcurator.uima.ts.PubSpan</elementType>
         </featureDescription>
         <featureDescription>
           <name>topic</name>
           <description/>
           <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName>
         </featureDescription>
       </features>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubIdentifier</name>
       <description/>
       <supertypeName>uima.cas.TOP</supertypeName>
       <features>
         <featureDescription>
           <name>identifierType</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>identifier</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
       </features>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubItem</name>
       <description/>
       <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubItemAssociation</name>
       <description/>
       <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName>
       <features>
         <featureDescription>
           <name>source</name>
           <description/>
           <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>destination</name>
           <description/>
           <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName>
         </featureDescription>
       </features>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubAnnotator</name>
       <description/>
       <supertypeName>uima.cas.TOP</supertypeName>
       <features>
         <featureDescription>
           <name>analyzerId</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>delegateName</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>analyzerVersion</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>note</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
       </features>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubEntity</name>
       <description/>
       <supertypeName>uima.tcas.Annotation</supertypeName>
       <features>
         <featureDescription>
           <name>annotations</name>
           <description/>
           <rangeTypeName>uima.cas.FSArray</rangeTypeName>
           <elementType>org.pubcurator.uima.ts.PubAnnotation</elementType>
         </featureDescription>
         <featureDescription>
           <name>score</name>
           <description/>
           <rangeTypeName>uima.cas.Integer</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>annotator</name>
           <description/>
           <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>subEntities</name>
           <description/>
           <rangeTypeName>uima.cas.FSArray</rangeTypeName>
           <elementType>org.pubcurator.uima.ts.PubEntity</elementType>
         </featureDescription>
         <featureDescription>
           <name>identifiers</name>
           <description/>
           <rangeTypeName>uima.cas.FSArray</rangeTypeName>
           <elementType>org.pubcurator.uima.ts.PubIdentifier</elementType>
         </featureDescription>
         <featureDescription>
           <name>topic</name>
           <description/>
           <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName>
         </featureDescription>
       </features>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubProperty</name>
       <description/>
       <supertypeName>uima.cas.TOP</supertypeName>
       <features>
         <featureDescription>
           <name>key</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>value</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
       </features>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubSpan</name>
       <description/>
       <supertypeName>uima.tcas.Annotation</supertypeName>
     </typeDescription>
     <typeDescription>
       <name>org.pubcurator.uima.ts.PubTopic</name>
       <description/>
       <supertypeName>uima.cas.TOP</supertypeName>
       <features>
         <featureDescription>
           <name>namespace</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
         <featureDescription>
           <name>name</name>
           <description/>
           <rangeTypeName>uima.cas.String</rangeTypeName>
         </featureDescription>
       </features>
     </typeDescription>
   </types>
</typeSystemDescription>




Serialized Type System Description:

<?xml version="1.0" encoding="UTF-8"?>
<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
     <types>
         <typeDescription>
             <name>uima.tcas.Annotation</name>
             <description/>
             <supertypeName>uima.cas.AnnotationBase</supertypeName>
             <features>
                 <featureDescription>
                     <name>sofa</name>
                     <description/>
                     <rangeTypeName>uima.cas.Sofa</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>begin</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>end</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>uima.tcas.DocumentAnnotation</name>
             <description/>
             <supertypeName>uima.tcas.Annotation</supertypeName>
             <features>
                 <featureDescription>
                     <name>sofa</name>
                     <description/>
                     <rangeTypeName>uima.cas.Sofa</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>begin</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>end</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>language</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubAnnotation</name>
             <description/>
             <supertypeName>uima.tcas.Annotation</supertypeName>
             <features>
                 <featureDescription>
                     <name>sofa</name>
                     <description/>
                     <rangeTypeName>uima.cas.Sofa</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>begin</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>end</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>annotator</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>score</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>identifiers</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>spans</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubSpan[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>topic</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubIdentifier</name>
             <description/>
             <supertypeName>uima.cas.TOP</supertypeName>
             <features>
                 <featureDescription>
                     <name>identifierType</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>identifier</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubItem</name>
             <description/>
             <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName>
             <features>
                 <featureDescription>
                     <name>sofa</name>
                     <description/>
                     <rangeTypeName>uima.cas.Sofa</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>begin</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>end</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>annotator</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>score</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>identifiers</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>spans</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubSpan[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>topic</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubItemAssociation</name>
             <description/>
             <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName>
             <features>
                 <featureDescription>
                     <name>sofa</name>
                     <description/>
                     <rangeTypeName>uima.cas.Sofa</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>begin</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>end</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>annotator</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>score</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>identifiers</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>spans</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubSpan[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>topic</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>source</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>destination</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubAnnotator</name>
             <description/>
             <supertypeName>uima.cas.TOP</supertypeName>
             <features>
                 <featureDescription>
                     <name>analyzerId</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>delegateName</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>analyzerVersion</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>note</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubEntity</name>
             <description/>
             <supertypeName>uima.tcas.Annotation</supertypeName>
             <features>
                 <featureDescription>
                     <name>sofa</name>
                     <description/>
                     <rangeTypeName>uima.cas.Sofa</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>begin</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>end</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>annotations</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubAnnotation[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>score</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>annotator</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>subEntities</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubEntity[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>identifiers</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>topic</name>
                     <description/>
                     <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubProperty</name>
             <description/>
             <supertypeName>uima.cas.TOP</supertypeName>
             <features>
                 <featureDescription>
                     <name>key</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>value</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubSpan</name>
             <description/>
             <supertypeName>uima.tcas.Annotation</supertypeName>
             <features>
                 <featureDescription>
                     <name>sofa</name>
                     <description/>
                     <rangeTypeName>uima.cas.Sofa</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>begin</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>end</name>
                     <description/>
                     <rangeTypeName>uima.cas.Integer</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubTopic</name>
             <description/>
             <supertypeName>uima.cas.TOP</supertypeName>
             <features>
                 <featureDescription>
                     <name>namespace</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
                 <featureDescription>
                     <name>name</name>
                     <description/>
                     <rangeTypeName>uima.cas.String</rangeTypeName>
                 </featureDescription>
             </features>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubIdentifier[]</name>
             <description/>
             <supertypeName>uima.cas.FSArray</supertypeName>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubSpan[]</name>
             <description/>
             <supertypeName>uima.cas.FSArray</supertypeName>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubAnnotation[]</name>
             <description/>
             <supertypeName>uima.cas.FSArray</supertypeName>
         </typeDescription>
         <typeDescription>
             <name>org.pubcurator.uima.ts.PubEntity[]</name>
             <description/>
             <supertypeName>uima.cas.FSArray</supertypeName>
         </typeDescription>
     </types>
</typeSystemDescription>





Serialized CAS:

<?xml version="1.0" encoding="UTF-8"?><xmi:XMI xmlns:cas="http:///uima/cas.ecore" 
xmlns:xmi="http://www.omg.org/XMI" xmlns:ts="http:///org/pubcurator/uima/ts.ecore" 
xmlns:tcas="http:///uima/tcas.ecore" xmi:version="2.0"><cas:NULL xmi:id="0"/><cas:Sofa xmi:id="10" 
sofaNum="1" sofaID="_InitialView"/><ts:PubAnnotation xmi:id="1" sofa="10" begin="10" end="20" 
score="1000"/><cas:View sofa="10" members="1"/></xmi:XMI>