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From Marco Masseroli <marco.masser...@polimi.it>
Subject Re: Taverna Workbench Bioinformatics 2.5 - issue with local service,"ncbi Gel Protein FASTA"
Date Thu, 19 Jan 2017 14:07:45 GMT
Hi Alan,

Do you have any news about the issue?

Thank you.
Best,

         Marco


Il 05/01/2017 14.06, Marco Masseroli ha scritto:
> Hi Alan,
>
> Thank you for your fast answer.
> Please let me know when you have a possible solution.
>
> Best,
>
>         Marco
>
>
> Il 05/01/2017 13.47, Alan Williams ha scritto:
>> On 05-Jan-17 11:54, Marco Masseroli wrote:
>>> Hi.
>>>
>>> Within the Taverna Workbench Bioinformatics 2.5, using the local 
>>> service
>>> "ncbi Gel Protein FASTA" with input id "1220173" (as in the tutorial),
>>> now the returned result is:
>>>
>>> <!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN">
>>> <html><head>
>>> <title>301 Moved Permanently</title>
>>> </head><body>
>>> <h1>Moved Permanently</h1>
>>> <p>The document has moved <a
>>> href="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?rettype=fasta&amp;db=protein&amp;retmode=text&amp;id=1220173">here</a>.</p>

>>>
>>> </body></html>
>>>
>>> I think all local services of "ncbi" included in the Workbench 
>>> should be
>>> updated with the new url; could you please confirm (possibly adding 
>>> when
>>> the update will be available)?
>>
>> Hello
>>
>> I can confirm the problem. It appears not to be as simple as changing 
>> the script to fetch from https rather than http.
>>
>> I will discuss it with the other developers when they are back in the 
>> New Year.
>>
>>> Thank you.
>>> Best,
>>>
>>>     Marco
>>
>> Alan
>

-- 
*Marco Masseroli, PhD*
Associate Professor
Dipartimento di Elettronica, Informazione e Bioingegneria
Politecnico di Milano
Piazza Leonardo da Vinci 32 - 20133 Milano, Italy
http://www.bioinformatics.deib.polimi.it/masseroli/
Tel. Office: +39 02 2399 3553; Lab: +39 02 2399 3631
Skype ID: masserolim

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