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From Stian Soiland-Reyes <st...@apache.org>
Subject Re: [GSoC 2016] Hi!!
Date Mon, 14 Mar 2016 17:30:31 GMT
Save to CWL would be done as an "Export to CWL" within the SCUFL2
libraries.  I don't think we need to focus on the GUI side yet as that
should be trivial - but integration with the tavtool library would be
great! (See the newest release email)


So given a t2flow input (or Taverna 3 Workflow Bundle) the output
should look somewhat like the YAML examples from CWL:

https://github.com/common-workflow-language/workflows/tree/master/workflows/hello



On 14 March 2016 at 13:59, Willy Aguirre <marti1125@gmail.com> wrote:
> thanks!! =D
>
> Hi Stian about https://github.com/apache/incubator-taverna-language/tree/master/taverna-scufl2-examples
>
>
> Is it idea to export to CWL or save to as cwl (yaml)
>
> https://gist.github.com/marti1125/4339ed5e595fc8fec19b   (xml)
>
> I'm trying this https://taverna.incubator.apache.org/download/language/
>
> Cheers!!
> Willy
>
> 2016-03-14 7:17 GMT-05:00 Stian Soiland-Reyes <stain@apache.org>:
>
>> In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and
>> "Enterprise" editions.
>>
>> If you installed the "Core" edition you can use Advanced -> Updates and
>> Plugins in the menu, then [Find new plugins] to install the "Bioinformatics
>> services". After a restart you should have Soaplab support.
>>
>>
>>
>>
>>
>> On 14 March 2016 at 06:32, Willy Aguirre <marti1125@gmail.com> wrote:
>>
>> > Hi! I am trying to understand the tutorial but in the part of import
>> > services does not exist soaplab
>> >
>> > how to add as a new plugin
>> >
>> > https://github.com/apache/incubator-taverna-plugin-bioinformatics
>> >
>> >
>> >
>> > **
>> > Cheers!
>> >
>> >
>> > 2016-03-13 12:54 GMT-05:00 Alan Williams <alaninmcr@googlemail.com>:
>> >
>> >> On 13-Mar-16 15:23, Willy Aguirre wrote:
>> >>
>> >>> could you give me some steps? I'm reading about CWL
>> >>>
>> >>
>> >> I think the easiest thing may be to look at a very simple CWL workflow
>> >> and compare it to a simple workflow in SCUFL2.
>> >>
>> >> A workflow for echoing the input parameter is at
>> >>
>> >>
>> >>
>> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
>> >>
>> >> A similar SCUFL2 workflow is in
>> >>
>> >>
>> >>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
>> >>
>> >> or the JSON may be easier to understand:
>> >>
>> >>
>> >>
>> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
>> >>
>> >> Alan
>> >>
>> >
>> >
>> >
>> > --
>> > Willy Aguirre | @willrre
>> > Blog: http://osgux.tumblr.com/
>> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
>> > Mozilla Hispano - Willyaguirre
>> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>> >
>>
>>
>>
>> --
>> Stian Soiland-Reyes
>> Apache Taverna (incubating), Apache Commons RDF (incubating)
>> http://orcid.org/0000-0001-9842-9718
>>
>
>
>
> --
> Willy Aguirre | @willrre
> Blog: http://osgux.tumblr.com/
> Mozilla Rep: https://reps.mozilla.org/u/Willy/
> Mozilla Hispano - Willyaguirre
> <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>



-- 
Stian Soiland-Reyes
Apache Taverna (incubating), Apache Commons RDF (incubating)
http://orcid.org/0000-0001-9842-9718

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