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From Willy Aguirre <marti1...@gmail.com>
Subject Re: [GSoC 2016] Hi!!
Date Mon, 14 Mar 2016 20:14:20 GMT
Hi Stian

I am little confused  =/
https://cwiki.apache.org/confluence/display/TAVERNADEV/2016-03+GSOC+2016
I prefer to do task taverna-900

Regards,
Willy

2016-03-14 12:30 GMT-05:00 Stian Soiland-Reyes <stain@apache.org>:

> Save to CWL would be done as an "Export to CWL" within the SCUFL2
> libraries.  I don't think we need to focus on the GUI side yet as that
> should be trivial - but integration with the tavtool library would be
> great! (See the newest release email)
>
>
> So given a t2flow input (or Taverna 3 Workflow Bundle) the output
> should look somewhat like the YAML examples from CWL:
>
>
> https://github.com/common-workflow-language/workflows/tree/master/workflows/hello
>
>
>
> On 14 March 2016 at 13:59, Willy Aguirre <marti1125@gmail.com> wrote:
> > thanks!! =D
> >
> > Hi Stian about
> https://github.com/apache/incubator-taverna-language/tree/master/taverna-scufl2-examples
> >
> >
> > Is it idea to export to CWL or save to as cwl (yaml)
> >
> > https://gist.github.com/marti1125/4339ed5e595fc8fec19b   (xml)
> >
> > I'm trying this https://taverna.incubator.apache.org/download/language/
> >
> > Cheers!!
> > Willy
> >
> > 2016-03-14 7:17 GMT-05:00 Stian Soiland-Reyes <stain@apache.org>:
> >
> >> In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and
> >> "Enterprise" editions.
> >>
> >> If you installed the "Core" edition you can use Advanced -> Updates and
> >> Plugins in the menu, then [Find new plugins] to install the
> "Bioinformatics
> >> services". After a restart you should have Soaplab support.
> >>
> >>
> >>
> >>
> >>
> >> On 14 March 2016 at 06:32, Willy Aguirre <marti1125@gmail.com> wrote:
> >>
> >> > Hi! I am trying to understand the tutorial but in the part of import
> >> > services does not exist soaplab
> >> >
> >> > how to add as a new plugin
> >> >
> >> > https://github.com/apache/incubator-taverna-plugin-bioinformatics
> >> >
> >> >
> >> >
> >> > **
> >> > Cheers!
> >> >
> >> >
> >> > 2016-03-13 12:54 GMT-05:00 Alan Williams <alaninmcr@googlemail.com>:
> >> >
> >> >> On 13-Mar-16 15:23, Willy Aguirre wrote:
> >> >>
> >> >>> could you give me some steps? I'm reading about CWL
> >> >>>
> >> >>
> >> >> I think the easiest thing may be to look at a very simple CWL
> workflow
> >> >> and compare it to a simple workflow in SCUFL2.
> >> >>
> >> >> A workflow for echoing the input parameter is at
> >> >>
> >> >>
> >> >>
> >>
> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl
> >> >>
> >> >> A similar SCUFL2 workflow is in
> >> >>
> >> >>
> >> >>
> >>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle
> >> >>
> >> >> or the JSON may be easier to understand:
> >> >>
> >> >>
> >> >>
> >>
> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json
> >> >>
> >> >> Alan
> >> >>
> >> >
> >> >
> >> >
> >> > --
> >> > Willy Aguirre | @willrre
> >> > Blog: http://osgux.tumblr.com/
> >> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
> >> > Mozilla Hispano - Willyaguirre
> >> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
> >> >
> >>
> >>
> >>
> >> --
> >> Stian Soiland-Reyes
> >> Apache Taverna (incubating), Apache Commons RDF (incubating)
> >> http://orcid.org/0000-0001-9842-9718
> >>
> >
> >
> >
> > --
> > Willy Aguirre | @willrre
> > Blog: http://osgux.tumblr.com/
> > Mozilla Rep: https://reps.mozilla.org/u/Willy/
> > Mozilla Hispano - Willyaguirre
> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>
>
>
>
> --
> Stian Soiland-Reyes
> Apache Taverna (incubating), Apache Commons RDF (incubating)
> http://orcid.org/0000-0001-9842-9718
>



-- 
Willy Aguirre | @willrre
Blog: http://osgux.tumblr.com/
Mozilla Rep: https://reps.mozilla.org/u/Willy/
Mozilla Hispano - Willyaguirre
<https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre>

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