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From jenk...@spark.tc
Subject Build failed in Jenkins: SystemML-DailyTest #879
Date Mon, 20 Mar 2017 22:01:24 GMT
See <https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/879/changes>

Changes:

[Matthias Boehm] [SYSTEMML-1423] Fix OOMs ultra-sparse spark/mr rand (stream nnz/block)

[Matthias Boehm] [MINOR] Fix various i/o resource leaks in parser/compiler/runtime/tests

------------------------------------------
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17/03/20 15:53:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 257.0 (TID 267,
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: ResultStage 257 (first at RDDConverterUtils.java:243)
finished in 0.006 s
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Registering RDD 721 (mapPartitionsToPair at
RDDConverterUtils.java:262)
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Got job 192 (collect at SparkExecutionContext.java:782)
with 1 output partitions
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Final stage: ResultStage 259 (collect at SparkExecutionContext.java:782)
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage
258)
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 258 (MapPartitionsRDD[721]
at mapPartitionsToPair at RDDConverterUtils.java:262), which has no missing parents
17/03/20 15:53:29 INFO memory.MemoryStore: Block broadcast_258 stored as values in memory
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17/03/20 15:53:29 INFO spark.SparkContext: Created broadcast 258 from broadcast at DAGScheduler.scala:996
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ShuffleMapStage
258 (MapPartitionsRDD[721] at mapPartitionsToPair at RDDConverterUtils.java:262)
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: ShuffleMapStage 258 (mapPartitionsToPair at
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: looking for newly runnable stages
17/03/20 15:53:29 INFO scheduler.DAGScheduler: running: Set()
17/03/20 15:53:29 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 259)
17/03/20 15:53:29 INFO scheduler.DAGScheduler: failed: Set()
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Submitting ResultStage 259 (MapPartitionsRDD[723]
at mapValues at SparkUtils.java:156), which has no missing parents
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17/03/20 15:53:29 INFO spark.SparkContext: Created broadcast 259 from broadcast at DAGScheduler.scala:996
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage
259 (MapPartitionsRDD[723] at mapValues at SparkUtils.java:156)
17/03/20 15:53:29 INFO scheduler.TaskSchedulerImpl: Adding task set 259.0 with 1 tasks
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17/03/20 15:53:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: ResultStage 259 (collect at SparkExecutionContext.java:782)
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: Registering RDD 725 (flatMapToPair at RDDConverterUtils.java:280)
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Got job 193 (collectAsList at MLContextTest.java:1343)
with 1 output partitions
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Final stage: ResultStage 261 (collectAsList
at MLContextTest.java:1343)
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage
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at flatMapToPair at RDDConverterUtils.java:280), which has no missing parents
17/03/20 15:53:29 INFO memory.MemoryStore: Block broadcast_260 stored as values in memory
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17/03/20 15:53:29 INFO storage.BlockManagerInfo: Added broadcast_260_piece0 in memory on 169.54.146.43:43311
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17/03/20 15:53:29 INFO spark.SparkContext: Created broadcast 260 from broadcast at DAGScheduler.scala:996
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ShuffleMapStage
260 (MapPartitionsRDD[725] at flatMapToPair at RDDConverterUtils.java:280)
17/03/20 15:53:29 INFO scheduler.TaskSchedulerImpl: Adding task set 260.0 with 1 tasks
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: ShuffleMapStage 260 (flatMapToPair at RDDConverterUtils.java:280)
finished in 0.004 s
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 261)
17/03/20 15:53:29 INFO scheduler.DAGScheduler: failed: Set()
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Submitting ResultStage 261 (MapPartitionsRDD[731]
at collectAsList at MLContextTest.java:1343), which has no missing parents
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17/03/20 15:53:29 INFO spark.SparkContext: Created broadcast 261 from broadcast at DAGScheduler.scala:996
17/03/20 15:53:29 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage
261 (MapPartitionsRDD[731] at collectAsList at MLContextTest.java:1343)
17/03/20 15:53:29 INFO scheduler.TaskSchedulerImpl: Adding task set 261.0 with 1 tasks
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17/03/20 15:53:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 261.0 (TID 271,
localhost, executor driver, partition 0, ANY, 5783 bytes)
17/03/20 15:53:29 INFO executor.Executor: Running task 0.0 in stage 261.0 (TID 271)
17/03/20 15:53:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out
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17/03/20 15:53:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 261.0, whose tasks have
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17/03/20 15:53:29 INFO scheduler.DAGScheduler: ResultStage 261 (collectAsList at MLContextTest.java:1343)
finished in 0.006 s
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17/03/20 15:53:29 INFO handler.ContextHandler: Stopped o.s.j.s.ServletContextHandler@f4994ce{/jobs/job/json,null,UNAVAILABLE}
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17/03/20 15:53:29 INFO ui.SparkUI: Stopped Spark web UI at http://169.54.146.43:4040
17/03/20 15:53:29 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint
stopped!
17/03/20 15:53:29 INFO memory.MemoryStore: MemoryStore cleared
17/03/20 15:53:29 INFO storage.BlockManager: BlockManager stopped
17/03/20 15:53:29 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
17/03/20 15:53:29 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint:
OutputCommitCoordinator stopped!
17/03/20 15:53:29 INFO spark.SparkContext: Successfully stopped SparkContext
Running org.apache.sysml.test.integration.mlcontext.MLContextTest
Tests run: 175, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 10.581 sec - in org.apache.sysml.test.integration.mlcontext.MLContextTest
17/03/20 15:53:29 INFO util.ShutdownHookManager: Shutdown hook called
17/03/20 15:53:29 INFO util.ShutdownHookManager: Deleting directory /tmp/spark-8b658143-03d1-4208-a3e4-70d338d99bf5
Running org.apache.sysml.test.integration.functions.quaternary.WeightedSigmoidTest
Tests run: 56, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 985.83 sec - in org.apache.sysml.test.integration.functions.quaternary.WeightedSigmoidTest
17/03/20 15:55:21 INFO util.ShutdownHookManager: Shutdown hook called
17/03/20 15:55:21 INFO util.ShutdownHookManager: Deleting directory /tmp/spark-903b78a9-d31d-4fb9-aa23-3e79fab6da80
Running org.apache.sysml.test.integration.functions.append.AppendVectorTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 390.843 sec - in org.apache.sysml.test.integration.functions.append.AppendVectorTest
Running org.apache.sysml.test.integration.functions.indexing.LeftIndexingTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 656.802 sec - in org.apache.sysml.test.integration.functions.indexing.LeftIndexingTest
Running org.apache.sysml.test.integration.applications.parfor.ParForCorrelationTest
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 296.085 sec - in org.apache.sysml.test.integration.applications.parfor.ParForCorrelationTest
Running org.apache.sysml.test.integration.applications.descriptivestats.UnivariateUnweightedScaleDenseTest
Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 333.292 sec - in org.apache.sysml.test.integration.applications.descriptivestats.UnivariateUnweightedScaleDenseTest
Running org.apache.sysml.test.integration.applications.parfor.ParForCorrelationTestLarge
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 45.549 sec - in org.apache.sysml.test.integration.applications.parfor.ParForCorrelationTestLarge
Running org.apache.sysml.test.integration.functions.reorg.FullOrderTest
Tests run: 132, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1,351.207 sec - in org.apache.sysml.test.integration.functions.reorg.FullOrderTest
Running org.apache.sysml.test.integration.functions.quaternary.WeightedDivMatrixMultTest
Tests run: 90, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1,498.141 sec - in org.apache.sysml.test.integration.functions.quaternary.WeightedDivMatrixMultTest
17/03/20 16:02:13 INFO util.ShutdownHookManager: Shutdown hook called
17/03/20 16:02:13 INFO util.ShutdownHookManager: Deleting directory /tmp/spark-c409226e-12d2-459d-a058-873c452fd20f
Running org.apache.sysml.test.integration.applications.descriptivestats.UnivariateWeightedScaleDenseTest
Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 362.986 sec - in org.apache.sysml.test.integration.applications.descriptivestats.UnivariateWeightedScaleDenseTest
Running org.apache.sysml.test.integration.applications.parfor.ParForNaiveBayesTest
Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 535.109 sec - in org.apache.sysml.test.integration.applications.parfor.ParForNaiveBayesTest
Running org.apache.sysml.test.integration.functions.append.AppendChainTest
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1,068.448 sec - in org.apache.sysml.test.integration.functions.append.AppendChainTest
Running org.apache.sysml.test.integration.applications.descriptivestats.UnivariateUnweightedScaleSparseTest
Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 269.366 sec - in org.apache.sysml.test.integration.applications.descriptivestats.UnivariateUnweightedScaleSparseTest
Running org.apache.sysml.test.integration.applications.dml.HITSDMLTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 94.227 sec - in org.apache.sysml.test.integration.applications.dml.HITSDMLTest
Running org.apache.sysml.test.integration.functions.append.AppendMatrixTest
Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1,414.552 sec - in org.apache.sysml.test.integration.functions.append.AppendMatrixTest
Running org.apache.sysml.test.integration.applications.descriptivestats.UnivariateWeightedScaleSparseTest
Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 352.272 sec - in org.apache.sysml.test.integration.applications.descriptivestats.UnivariateWeightedScaleSparseTest
Running org.apache.sysml.test.integration.applications.pydml.ArimaPyDMLTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 49.721 sec - in org.apache.sysml.test.integration.applications.pydml.ArimaPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.HITSPyDMLTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 77.76 sec - in org.apache.sysml.test.integration.applications.pydml.HITSPyDMLTest
Running org.apache.sysml.test.integration.applications.dml.LinearRegressionDMLTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 50.76 sec - in org.apache.sysml.test.integration.applications.dml.LinearRegressionDMLTest
Running org.apache.sysml.test.integration.applications.pydml.CsplineDSPyDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.776 sec - in org.apache.sysml.test.integration.applications.pydml.CsplineDSPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.LinearLogRegPyDMLTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 91.15 sec - in org.apache.sysml.test.integration.applications.pydml.LinearLogRegPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.NaiveBayesPyDMLTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 81.234 sec - in org.apache.sysml.test.integration.applications.pydml.NaiveBayesPyDMLTest
Running org.apache.sysml.test.integration.applications.dml.CsplineCGDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.692 sec - in org.apache.sysml.test.integration.applications.dml.CsplineCGDMLTest
Running org.apache.sysml.test.integration.applications.dml.L2SVMDMLTest
Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 63.54 sec - in org.apache.sysml.test.integration.applications.dml.L2SVMDMLTest
Running org.apache.sysml.test.integration.applications.pydml.MDABivariateStatsPyDMLTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 295.594 sec - in org.apache.sysml.test.integration.applications.pydml.MDABivariateStatsPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.PageRankPyDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.313 sec - in org.apache.sysml.test.integration.applications.pydml.PageRankPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.NaiveBayesParforPyDMLTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 81.076 sec - in org.apache.sysml.test.integration.applications.pydml.NaiveBayesParforPyDMLTest
Running org.apache.sysml.test.integration.applications.dml.NaiveBayesDMLTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 81.164 sec - in org.apache.sysml.test.integration.applications.dml.NaiveBayesDMLTest
Running org.apache.sysml.test.integration.applications.dml.MDABivariateStatsDMLTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 297.573 sec - in org.apache.sysml.test.integration.applications.dml.MDABivariateStatsDMLTest
Running org.apache.sysml.test.integration.applications.dml.PageRankDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.494 sec - in org.apache.sysml.test.integration.applications.dml.PageRankDMLTest
Running org.apache.sysml.test.integration.applications.pydml.GLMPyDMLTest
Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 589.362 sec - in org.apache.sysml.test.integration.applications.pydml.GLMPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.MultiClassSVMPyDMLTest
Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 88.82 sec - in org.apache.sysml.test.integration.applications.pydml.MultiClassSVMPyDMLTest
Running org.apache.sysml.test.integration.applications.dml.ID3DMLTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 394.146 sec - in org.apache.sysml.test.integration.applications.dml.ID3DMLTest
Running org.apache.sysml.test.integration.applications.dml.GLMDMLTest
Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 875.891 sec - in org.apache.sysml.test.integration.applications.dml.GLMDMLTest
Running org.apache.sysml.test.integration.applications.pydml.CsplineCGPyDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.039 sec - in org.apache.sysml.test.integration.applications.pydml.CsplineCGPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.WelchTPyDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.356 sec - in org.apache.sysml.test.integration.applications.pydml.WelchTPyDMLTest
Running org.apache.sysml.test.integration.applications.dml.MultiClassSVMDMLTest
Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 89.314 sec - in org.apache.sysml.test.integration.applications.dml.MultiClassSVMDMLTest
Running org.apache.sysml.test.integration.applications.dml.CsplineDSDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.343 sec - in org.apache.sysml.test.integration.applications.dml.CsplineDSDMLTest
Running org.apache.sysml.test.integration.applications.pydml.ApplyTransformPyDMLTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.794 sec - in org.apache.sysml.test.integration.applications.pydml.ApplyTransformPyDMLTest
Running org.apache.sysml.test.integration.applications.dml.NaiveBayesParforDMLTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 80.98 sec - in org.apache.sysml.test.integration.applications.dml.NaiveBayesParforDMLTest
Running org.apache.sysml.test.integration.applications.pydml.L2SVMPyDMLTest
Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 64.034 sec - in org.apache.sysml.test.integration.applications.pydml.L2SVMPyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.LinearRegressionPyDMLTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 51.102 sec - in org.apache.sysml.test.integration.applications.pydml.LinearRegressionPyDMLTest
Running org.apache.sysml.test.integration.applications.dml.LinearLogRegDMLTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 61.279 sec - in org.apache.sysml.test.integration.applications.dml.LinearLogRegDMLTest
Running org.apache.sysml.test.integration.applications.dml.GNMFDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 61.342 sec - in org.apache.sysml.test.integration.applications.dml.GNMFDMLTest
Running org.apache.sysml.test.integration.applications.dml.WelchTDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.541 sec - in org.apache.sysml.test.integration.applications.dml.WelchTDMLTest
Running org.apache.sysml.test.integration.applications.dml.ApplyTransformDMLTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.356 sec - in org.apache.sysml.test.integration.applications.dml.ApplyTransformDMLTest
Running org.apache.sysml.test.integration.applications.pydml.ID3PyDMLTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 381.655 sec - in org.apache.sysml.test.integration.applications.pydml.ID3PyDMLTest
Running org.apache.sysml.test.integration.applications.pydml.GNMFPyDMLTest
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 55.659 sec - in org.apache.sysml.test.integration.applications.pydml.GNMFPyDMLTest

Results :

Failed tests: 
  FrameMatrixReblockTest.testFrameWriteMultipleSparseBinarySpark:170->runFrameReblockTest:230
24 values are not in equal

Tests run: 6752, Failures: 1, Errors: 0, Skipped: 0

[INFO] 
[INFO] --- maven-failsafe-plugin:2.17:verify (default) @ systemml ---
[INFO] Failsafe report directory: <https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/failsafe-reports>
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 02:25 h
[INFO] Finished at: 2017-03-20T17:01:24-05:00
[INFO] Final Memory: 64M/2348M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-failsafe-plugin:2.17:verify
(default) on project systemml: There are test failures.
[ERROR] 
[ERROR] Please refer to <https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/failsafe-reports>
for the individual test results.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following
articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Execute shell' marked build as failure
Run condition [Always] enabling perform for step [[]]

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