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From "Glenn Weidner" <gweid...@us.ibm.com>
Subject Re: Build failed in Jenkins: SystemML-DailyTest #338
Date Fri, 24 Jun 2016 19:00:53 GMT

No problem - glad to help.  There may be related item that I have not been
able to resolve where 2 test failures observed after on-demand build 181
completed:

09:56:22 Running
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest

09:56:23 Tests run: 4, Failures: 0, Errors: 2, Skipped: 0, Time elapsed:
21.572 sec <<< FAILURE! - in
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest

09:56:23 testHomesDummycodeSparkCSV
(org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest)
  Time elapsed: 11.657 sec  <<< ERROR!
09:56:23 java.lang.RuntimeException: java.io.IOException: Failed parallel
read of text csv input.
09:56:23 		 at java.util.concurrent.FutureTask.report
(FutureTask.java:122)
09:56:23 		 at java.util.concurrent.FutureTask.get
(FutureTask.java:192)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSVParallel.readCSVFrameFromHDFS
(FrameReaderTextCSVParallel.java:108)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSV.readFrameFromHDFS
(FrameReaderTextCSV.java:96)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReader.readFrameFromHDFS
(FrameReader.java:83)
09:56:23 		 at
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest.runTransformTest
(TransformFrameEncodeDecodeTest.java:132)
09:56:23 		 at
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest.testHomesDummycodeSparkCSV
(TransformFrameEncodeDecodeTest.java:79)
09:56:23 Caused by: java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
09:56:23 		 at java.util.ArrayList.rangeCheck(ArrayList.java:653)
09:56:23 		 at java.util.ArrayList.get(ArrayList.java:429)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSV.readCSVFrameFromInputSplit
(FrameReaderTextCSV.java:185)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSVParallel$ReadRowsTask.call
(FrameReaderTextCSVParallel.java:226)
09:56:23 		 at java.util.concurrent.FutureTask.run
(FutureTask.java:266)
09:56:23 		 at java.util.concurrent.ThreadPoolExecutor.runWorker
(ThreadPoolExecutor.java:1142)
09:56:23 		 at java.util.concurrent.ThreadPoolExecutor$Worker.run
(ThreadPoolExecutor.java:617)
09:56:23 		 at java.lang.Thread.run(Thread.java:745)
09:56:23
09:56:23 testHomesRecodeSparkCSV
(org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest)
  Time elapsed: 4.671 sec  <<< ERROR!
09:56:23 java.lang.RuntimeException: java.io.IOException: Failed parallel
read of text csv input.
09:56:23 		 at java.util.concurrent.FutureTask.report
(FutureTask.java:122)
09:56:23 		 at java.util.concurrent.FutureTask.get
(FutureTask.java:192)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSVParallel.readCSVFrameFromHDFS
(FrameReaderTextCSVParallel.java:108)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSV.readFrameFromHDFS
(FrameReaderTextCSV.java:96)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReader.readFrameFromHDFS
(FrameReader.java:83)
09:56:23 		 at
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest.runTransformTest
(TransformFrameEncodeDecodeTest.java:132)
09:56:23 		 at
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest.testHomesRecodeSparkCSV
(TransformFrameEncodeDecodeTest.java:69)
09:56:23 Caused by: java.lang.IndexOutOfBoundsException: Index: 1, Size: 1
09:56:23 		 at java.util.ArrayList.rangeCheck(ArrayList.java:653)
09:56:23 		 at java.util.ArrayList.get(ArrayList.java:429)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSV.readCSVFrameFromInputSplit
(FrameReaderTextCSV.java:185)
09:56:23 		 at
org.apache.sysml.runtime.io.FrameReaderTextCSVParallel$ReadRowsTask.call
(FrameReaderTextCSVParallel.java:226)
09:56:23 		 at java.util.concurrent.FutureTask.run
(FutureTask.java:266)
09:56:23 		 at java.util.concurrent.ThreadPoolExecutor.runWorker
(ThreadPoolExecutor.java:1142)
09:56:23 		 at java.util.concurrent.ThreadPoolExecutor$Worker.run
(ThreadPoolExecutor.java:617)
09:56:23 		 at java.lang.Thread.run(Thread.java:745)


I can't reproduce the failure as the 150 transform tests all passed when
run on my local development environment including when run in parallel from
command shell or under Eclipse as suite.

Running
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecodeTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.164 sec
- in
org.apache.sysml.test.integration.functions.transform.TransformFrameEncodeDecode
...
Tests run: 150, Failures: 0, Errors: 0, Skipped: 0

The daily build will kick-off soon and will check to see if re-occurs.

Thanks,
Glenn



From:	Matthias Boehm/Almaden/IBM@IBMUS
To:	dev@systemml.incubator.apache.org
Date:	06/24/2016 10:51 AM
Subject:	Re: Build failed in Jenkins: SystemML-DailyTest #338



thanks for the fix Glenn.

Regards,
Matthias

Glenn Weidner---06/24/2016 09:16:05 AM---I've directly pushed 1 commit of
pom.xml to exclude new test data file (src/test/scripts/functions/j

From: Glenn Weidner/Silicon Valley/IBM@IBMUS
To: dev@systemml.incubator.apache.org
Date: 06/24/2016 09:16 AM
Subject: Re: Build failed in Jenkins: SystemML-DailyTest #338



I've directly pushed 1 commit of pom.xml to exclude new test data file
(src/test/scripts/functions/jmlc/tfmtd_example2/column.names) from license
check.
Note I verified the rat-license check passed prior to merging the change:
https://sparktc.ibmcloud.com/jenkins/job/SystemML-OnDemand/181/console

Thanks,
Glenn

jenkins---06/24/2016 12:32:33 AM---See <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/338/changes>
Changes:

From: jenkins@spark.tc
To: Michael W Dusenberry/San Francisco/IBM@IBMUS, lresende@apache.org,
dev@systemml.incubator.apache.org, Matthias Boehm/Almaden/IBM@IBMUS
Date: 06/24/2016 12:32 AM
Subject: Build failed in Jenkins: SystemML-DailyTest #338



See <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/338/changes>

Changes:

[Matthias Boehm] [SYSTEMML-569] Distributed spark transform encode/decode
(recode, dummy)

------------------------------------------
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[INFO] Copying scala-library-2.10.5.jar to <
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[INFO]
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[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
[INFO]
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[INFO]
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[INFO]
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[INFO]
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[INFO] Surefire report directory: <
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>

-------------------------------------------------------
T E S T S
-------------------------------------------------------

Results :




Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO]
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[INFO] Building jar: <
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>
[INFO]
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[INFO] Configured Artifact: org.apache.hadoop:hadoop-test:1.2.1:jar
[INFO]
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 to <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/hadoop-test
> with includes "**/*" and excludes ""
[INFO]
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[INFO] Including org.apache.wink:wink-json4j:jar:1.4 in the shaded jar.
[INFO] Including org.antlr:antlr4-annotations:jar:4.3 in the shaded jar.
[INFO] Including org.antlr:antlr4-runtime:jar:4.3 in the shaded jar.
[INFO] Including org.abego.treelayout:org.abego.treelayout.core:jar:1.0.1
in the shaded jar.
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.jar
> with <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-shaded.jar
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO] Dependency-reduced POM written at: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
>
[INFO]
[INFO] --- maven-clean-plugin:3.0.0:clean (clean-original-jar) @ systemml
---
[INFO] Deleting <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target>
(includes = [original-*.jar], excludes = [])
[INFO]
[INFO] --- maven-assembly-plugin:2.4:single (create-main-jar) @ systemml
---
[INFO] Reading assembly descriptor: src/assembly/jar.xml
[WARNING] Artifact:
org.apache.systemml:systemml:jar:0.11.0-incubating-SNAPSHOT references the
same file as the assembly destination file. Moving it to a temporary
location for inclusion.
[INFO] Building jar: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.jar
>
[WARNING] Configuration options: 'appendAssemblyId' is set to false, and
'classifier' is missing.
Instead of attaching the assembly file: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.jar
,> it will become the file for main project artifact.
NOTE: If multiple descriptors or descriptor-formats are provided for this
project, the value of this file will be non-deterministic!
[WARNING] Replacing pre-existing project main-artifact file: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/archive-tmp/systemml-0.11.0-incubating-SNAPSHOT.jar
>
with assembly file: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.jar
>
[INFO]
[INFO] --- maven-assembly-plugin:2.4:single
(create-source-distribution-assembly) @ systemml ---
[INFO] Reading assembly descriptor: src/assembly/source.xml
[INFO] Building tar: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-src.tar.gz
>
[INFO] Building zip: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-src.zip
>
[INFO]
[INFO] --- maven-assembly-plugin:2.4:single
(create-binary-cluster-distribution-assembly) @ systemml ---
[INFO] Reading assembly descriptor: src/assembly/distrib.xml
[INFO] Building tar: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.tar.gz
>
[INFO] Building zip: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.zip
>
[INFO]
[INFO] --- maven-assembly-plugin:2.4:single (create-standalone-jar) @
systemml ---
[INFO] Reading assembly descriptor: src/assembly/standalone-jar.xml
[INFO] Building jar: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-standalone.jar
>
[INFO]
[INFO] --- maven-assembly-plugin:2.4:single
(create-binary-standalone-distribution-assembly) @ systemml ---
[INFO] Reading assembly descriptor: src/assembly/standalone.xml
[INFO] Building tar: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-standalone.tar.gz
>
[INFO] Building zip: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-standalone.zip
>
[INFO]
[INFO] --- maven-antrun-plugin:1.8:run (copy) @ systemml ---
[INFO] Executing tasks

copy and rename JAR:
   [copy] Copying 1 file to <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target>
[INFO] Executed tasks
[INFO]
[INFO] --- apache-rat-plugin:0.11:check (default) @ systemml ---
[INFO] 51 implicit excludes (use -debug for more details).
[INFO] Exclude: .gitignore
[INFO] Exclude: .repository/
[INFO] Exclude: .idea/
[INFO] Exclude: .git
[INFO] Exclude: .settings
[INFO] Exclude: .classpath
[INFO] Exclude: .project
[INFO] Exclude: docs
[INFO] Exclude: **/docs/**
[INFO] Exclude: **/*.csv
[INFO] Exclude: **/*.json
[INFO] Exclude: **/*.mtx
[INFO] Exclude: **/*.mtd
[INFO] Exclude: **/target/**
[INFO] Exclude: **/README.md
[INFO] Exclude: samples/jupyter-notebooks/*.ipynb
[INFO] Exclude: src/main/j ava/*.tokens
[INFO] Exclude:
src/test/scripts/functions/external/kMeans/kMeansWrapperOutput
[INFO] Exclude:
src/test/scripts/functions/external/kMeans2/kMeansWrapperOutput1
[INFO] Exclude:
src/test/scripts/functions/external/kMeans2/kMeansWrapperOutput2
[INFO] Exclude: src/test/scripts/functions/external/seqMiner/FreqSeqFile
[INFO] Exclude:
src/test/scripts/functions/external/seqMiner/FreqSeqSupportFile
[INFO] Exclude: src/test/scripts/functions/io/csv/in/transfusion_1.data
[INFO] Exclude:
src/test/scripts/functions/io/csv/in/transfusion_1.data.single
[INFO] Exclude:
src/test/scripts/functions/io/csv/in/transfusion_2.data/part-0
[INFO] Exclude:
src/test/scripts/functions/io/csv/in/transfusion_2.data/part-1
[INFO] Exclude:
src/test/scripts/functions/io/csv/in/transfusion_2.data.single
[INFO] Exclude:
src/test/scripts/functions/io/csv/in/transfusion_3.data/part-0
[INFO] Exclude:
src/test/scripts/functions/io/csv/in/transfusion_3.data/part-1
[INFO] Exclude:
src/test/scripts/functions/io/csv/in/transfusion_3.data.single
[INFO] Exclude: src/test/scripts/functions/jmlc/**/*.impute
[INFO] Exclude: src/test/scripts/functions/jmlc/**/*.map
[INFO] Exclude: src/test/scripts/functions/jmlc/**/*.mode
[INFO] Exclude: src/test/scripts/functions/jmlc/**/*.ndistinct
[INFO] Exclude: src/test/scripts/functions/jmlc/**/*.node
[INFO] Exclude:
src/test/scripts/functions/jmlc/tfmtd_example/Bin/saleprice.bin
[INFO] Exclude: src/test/scripts/functions/jmlc/tfmtd_example/Bin/sqft.bin
[INFO] Exclude: src/test/scripts/functions/jmlc/tfmtd_example/column.names
[INFO] Exclude:
src/test/scripts/functions/jmlc/tfmtd_example/dummycoded.column.names
[INFO] Exclude:
src/test/scripts/functions/jmlc/tfmtd_frame_example/tfmtd_frame
[INFO] Exclude:
src/test/scripts/functions/transform/input/homes/homesNAN.csv.colnames
[INFO] 2821 resources included (use -debug for more details)
[INFO] Rat check: Summary of files. Unapproved: 1 unknown: 1 generated: 0
approved: 2788 licence.
[INFO]
------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO]
------------------------------------------------------------------------
[INFO] Total time: 01:25 min
[INFO] Finished at: 2016-06-24T02:31:51-05:00
[INFO] Final Memory: 99M/3206M
[INFO]
------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.rat:apache-rat-plugin:0.11:check
(default) on project systemml: Too many files with unapproved license: 1
See RAT report in: <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/rat.txt
> -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,
please read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/dependency-reduced-pom.xml
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT.pom

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.jar
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT.jar

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-src.tar.gz
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT-src.tar.gz

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-src.zip
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT-src.zip

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.tar.gz
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT.tar.gz

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT.zip
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT.zip

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-standalone.jar
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT-standalone.jar

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-standalone.tar.gz
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT-standalone.tar.gz

[JENKINS] Archiving <
https://sparktc.ibmcloud.com/jenkins/job/SystemML-DailyTest/ws/target/systemml-0.11.0-incubating-SNAPSHOT-standalone.zip
> to
org.apache.systemml/systemml/0.11.0-incubating-SNAPSHOT/systemml-0.11.0-incubating-SNAPSHOT-standalone.zip

channel stopped
Run condition [Always] enabling perform for step [[]]







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