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From jkbradley <...@git.apache.org>
Subject [GitHub] spark pull request #15148: [SPARK-5992][ML] Locality Sensitive Hashing
Date Wed, 28 Sep 2016 22:13:53 GMT
Github user jkbradley commented on a diff in the pull request:

    https://github.com/apache/spark/pull/15148#discussion_r81029208
  
    --- Diff: mllib/src/main/scala/org/apache/spark/ml/feature/LSH.scala ---
    @@ -0,0 +1,322 @@
    +/*
    + * Licensed to the Apache Software Foundation (ASF) under one or more
    + * contributor license agreements.  See the NOTICE file distributed with
    + * this work for additional information regarding copyright ownership.
    + * The ASF licenses this file to You under the Apache License, Version 2.0
    + * (the "License"); you may not use this file except in compliance with
    + * the License.  You may obtain a copy of the License at
    + *
    + *    http://www.apache.org/licenses/LICENSE-2.0
    + *
    + * Unless required by applicable law or agreed to in writing, software
    + * distributed under the License is distributed on an "AS IS" BASIS,
    + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    + * See the License for the specific language governing permissions and
    + * limitations under the License.
    + */
    +
    +package org.apache.spark.ml.feature
    +
    +import scala.util.Random
    +
    +import org.apache.spark.ml.{Estimator, Model}
    +import org.apache.spark.ml.linalg.{Vector, VectorUDT}
    +import org.apache.spark.ml.param.{IntParam, ParamMap, ParamValidators}
    +import org.apache.spark.ml.param.shared.{HasInputCol, HasOutputCol}
    +import org.apache.spark.ml.util.SchemaUtils
    +import org.apache.spark.sql._
    +import org.apache.spark.sql.expressions.UserDefinedFunction
    +import org.apache.spark.sql.functions._
    +import org.apache.spark.sql.types._
    +
    +/**
    + * Params for [[LSH]].
    + */
    +private[ml] trait LSHParams extends HasInputCol with HasOutputCol {
    +  /**
    +   * Param for the dimension of LSH OR-amplification.
    +   *
    +   * In this implementation, we use LSH OR-amplification to reduce the false negative
rate. This
    +   * param is the dimension of the amplification. The higher the dimension is, the lower
the false
    +   * negative rate.
    +   * @group param
    +   */
    +  final val outputDim: IntParam = new IntParam(this, "outputDim", "output dimension",
    +    ParamValidators.gt(0))
    +
    +  /** @group getParam */
    +  final def getOutputDim: Int = $(outputDim)
    +
    +  setDefault(outputDim -> 1, outputCol -> "lsh_output")
    +
    +  /**
    +   * Transform the Schema for LSH
    +   * @param schema The schema of the input dataset without outputCol
    +   * @return A derived schema with outputCol added
    +   */
    +  protected[this] final def validateAndTransformSchema(schema: StructType): StructType
= {
    +    SchemaUtils.appendColumn(schema, $(outputCol), new VectorUDT)
    +  }
    +}
    +
    +/**
    + * Model produced by [[LSH]].
    + */
    +abstract class LSHModel[T <: LSHModel[T]] private[ml]
    +  extends Model[T] with LSHParams {
    +  override def copy(extra: ParamMap): T = defaultCopy(extra)
    +  /**
    +   * :: DeveloperApi ::
    +   *
    +   * The hash function of LSH, mapping a predefined KeyType to a Vector
    +   * @return The mapping of LSH function.
    +   */
    +  protected[this] val hashFunction: Vector => Vector
    +
    +  /**
    +   * :: DeveloperApi ::
    +   *
    +   * Calculate the distance between two different keys using the distance metric corresponding
    +   * to the hashFunction
    +   * @param x One of the point in the metric space
    +   * @param y Another the point in the metric space
    +   * @return The distance between x and y in double
    +   */
    +  protected[ml] def keyDistance(x: Vector, y: Vector): Double
    +
    +  /**
    +   * :: DeveloperApi ::
    +   *
    +   * Calculate the distance between two different hash Vectors. By default, the distance
is the
    +   * minimum distance of two hash values in any dimension.
    +   *
    +   * @param x One of the hash vector
    +   * @param y Another hash vector
    +   * @return The distance between hash vectors x and y in double
    +   */
    +  protected[ml] def hashDistance(x: Vector, y: Vector): Double
    +
    +  /**
    +   * Transforms the input dataset.
    +   */
    +  override def transform(dataset: Dataset[_]): DataFrame = {
    +    transformSchema(dataset.schema, logging = true)
    +    val transformUDF = udf(hashFunction, new VectorUDT)
    +    dataset.withColumn($(outputCol), transformUDF(dataset($(inputCol))))
    +  }
    +
    +  /**
    +   * :: DeveloperApi ::
    +   *
    +   * Check transform validity and derive the output schema from the input schema.
    +   *
    +   * Typical implementation should first conduct verification on schema change and parameter
    +   * validity, including complex parameter interaction checks.
    +   */
    +  override def transformSchema(schema: StructType): StructType = {
    +    validateAndTransformSchema(schema)
    +  }
    +
    +  /**
    +   * Given a large dataset and an item, approximately find at most k items which have
the closest
    +   * distance to the item.
    +   *
    +   * This method has implemented two way of fetching k nearest neighbors:
    +   *    Single Probing: Fast, return at most k elements (Probing only one buckets)
    +   *    Multiple Probing: Slow, return exact k elements (Probing multiple buckets close
to the key)
    +   *
    +   * @param dataset the dataset to look for the key
    +   * @param key The key to hash for the item
    +   * @param k The maximum number of items closest to the key
    +   * @param singleProbing True for using Single Probing; false for multiple probing
    +   * @param distCol The column to store the distance between pairs
    +   * @return A dataset containing at most k items closest to the key. A distCol is added
to show
    +   *         the distance between each record and the key.
    +   */
    +  def approxNearestNeighbors(
    +      dataset: Dataset[_],
    +      key: Vector,
    +      k: Int,
    +      singleProbing: Boolean,
    +      distCol: String): Dataset[_] = {
    +    assert(k > 0, "The number of nearest neighbors cannot be less than 1")
    +    // Get Hash Value of the key v
    +    val keyHash = hashFunction(key)
    +    val modelDataset: DataFrame = if (!dataset.columns.contains($(outputCol))) {
    +        transform(dataset)
    +      } else {
    +        dataset.toDF()
    +      }
    +
    +    // In the origin dataset, find the hash value u that is closest to v
    +    val hashDistUDF = udf((x: Vector) => hashDistance(x, keyHash), DataTypes.DoubleType)
    +    val hashDistCol = hashDistUDF(col($(outputCol)))
    +
    +    val modelSubset = if (singleProbing) {
    +      modelDataset.filter(hashDistCol === 0.0)
    +    } else {
    +      // Compute threshold to get exact k elements.
    +      val modelDatasetSortedByHash = modelDataset.sort(hashDistCol).limit(k)
    +      val thresholdDataset = modelDatasetSortedByHash.select(max(hashDistCol))
    +      val hashThreshold = thresholdDataset.collect()(0)(0).asInstanceOf[Double]
    +
    +      // Filter the dataset where the hash value is less than the threshold.
    +      modelDataset.filter(hashDistCol <= hashThreshold)
    +    }
    +
    +    // Get the top k nearest neighbor by their distance to the key
    +    val keyDistUDF = udf((x: Vector) => keyDistance(x, key), DataTypes.DoubleType)
    +    val modelSubsetWithDistCol = modelSubset.withColumn(distCol, keyDistUDF(col($(inputCol))))
    +    modelSubsetWithDistCol.sort(distCol).limit(k)
    +  }
    +
    +  def approxNearestNeighbors(dataset: Dataset[_], key: Vector, k: Int): Dataset[_] =
{
    +    approxNearestNeighbors(dataset, key, k, true, "distCol")
    +  }
    +
    +  /**
    +   * Preprocess step for approximate similarity join. Transform and explode the outputCol
to
    +   * explodeCols.
    +   * @param dataset The dataset to transform and explode.
    +   * @param explodeCols The alias for the exploded columns, must be a seq of two strings.
    +   * @return A dataset containing idCol, inputCol and explodeCols
    +   */
    +  private[this] def processDataset(dataset: Dataset[_], explodeCols: Seq[String]): Dataset[_]
= {
    +    if (explodeCols.size != 2) {
    +      throw new Exception("explodeCols must be two strings.")
    +    }
    +    val vectorToMap: UserDefinedFunction = udf((x: Vector) => x.asBreeze.iterator.toMap,
    +      MapType(DataTypes.IntegerType, DataTypes.DoubleType))
    +    val modelDataset: DataFrame = if (!dataset.columns.contains($(outputCol))) {
    +      transform(dataset)
    +    } else {
    +      dataset.toDF()
    +    }
    +    modelDataset.select(col("*"), explode(vectorToMap(col($(outputCol)))).as(explodeCols))
    +  }
    +
    +  /**
    +   * Recreate a column using the same column name but different attribute id. Used in
approximate
    +   * similarity join.
    +   * @param dataset The dataset where a column need to recreate
    +   * @param colName The name of the column to recreate
    +   * @param tmpColName A temporary column name which does not conflict with existing
columns
    +   * @return
    +   */
    +  private[this] def recreateCol(dataset: Dataset[_], colName: String,
    +                                tmpColName: String): Dataset[_] = {
    +    dataset
    +      .withColumnRenamed(colName, tmpColName)
    +      .withColumn(colName, col(tmpColName))
    +      .drop(tmpColName)
    +  }
    +
    +  /**
    +   * Join two dataset to approximately find all pairs of records whose distance are smaller
    +   * than the threshold.
    +   * @param datasetA One of the datasets to join
    +   * @param datasetB Another dataset to join
    +   * @param threshold The threshold for the distance of record pairs
    +   * @param distCol The column to store the distance between pairs
    +   * @return A joined dataset containing pairs of records. A distCol is added to show
the distance
    +   *         between each pair of records.
    +   */
    +  def approxSimilarityJoin(
    +      datasetA: Dataset[_],
    +      datasetB: Dataset[_],
    +      threshold: Double,
    +      distCol: String): Dataset[_] = {
    +
    +    val explodeCols = Seq("lsh#entry", "lsh#hashValue")
    +    val explodedA = processDataset(datasetA, explodeCols)
    +
    +    // If this is a self join, we need to recreate the inputCol of datasetB to avoid
ambiguity.
    +    // TODO: Remove recreateCol logic once SPARK-17154 is resolved.
    +    val explodedB = if (datasetA != datasetB) {
    +      processDataset(datasetB, explodeCols)
    +    } else {
    +      val recreatedB = recreateCol(datasetB, $(inputCol), s"${$(inputCol)}#${Random.nextString(5)}")
    +      processDataset(recreatedB, explodeCols)
    +    }
    +
    +    // Do a hash join on where the exploded hash values are equal.
    +    val joinedDataset = explodedA.join(explodedB, explodeCols)
    +      .drop(explodeCols: _*)
    +
    +    // Add a new column to store the distance of the two records.
    +    val distUDF = udf((x: Vector, y: Vector) => keyDistance(x, y), DataTypes.DoubleType)
    +    val joinedDatasetWithDist = joinedDataset.select(col("*"),
    +      distUDF(explodedA($(inputCol)), explodedB($(inputCol))).as(distCol)
    +    )
    +
    +    // Filter the joined datasets where the distance are smaller than the threshold.
    +    joinedDatasetWithDist.filter(col(distCol) < threshold).distinct()
    +  }
    +
    +  def approxSimilarityJoin(
    --- End diff --
    
    The default distCol needs to be documented


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