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From JoshRosen <...@git.apache.org>
Subject [GitHub] spark pull request #15089: [SPARK-15621] [SQL] Support spilling for Python U...
Date Thu, 22 Sep 2016 20:42:52 GMT
Github user JoshRosen commented on a diff in the pull request:

    https://github.com/apache/spark/pull/15089#discussion_r80130429
  
    --- Diff: sql/core/src/main/scala/org/apache/spark/sql/execution/python/RowQueue.scala
---
    @@ -0,0 +1,278 @@
    +/*
    +* Licensed to the Apache Software Foundation (ASF) under one or more
    +* contributor license agreements.  See the NOTICE file distributed with
    +* this work for additional information regarding copyright ownership.
    +* The ASF licenses this file to You under the Apache License, Version 2.0
    +* (the "License"); you may not use this file except in compliance with
    +* the License.  You may obtain a copy of the License at
    +*
    +*    http://www.apache.org/licenses/LICENSE-2.0
    +*
    +* Unless required by applicable law or agreed to in writing, software
    +* distributed under the License is distributed on an "AS IS" BASIS,
    +* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    +* See the License for the specific language governing permissions and
    +* limitations under the License.
    +*/
    +
    +package org.apache.spark.sql.execution.python
    +
    +import java.io._
    +
    +import com.google.common.io.Closeables
    +
    +import org.apache.spark.SparkException
    +import org.apache.spark.memory.{MemoryConsumer, TaskMemoryManager}
    +import org.apache.spark.sql.catalyst.expressions.UnsafeRow
    +import org.apache.spark.unsafe.Platform
    +import org.apache.spark.unsafe.memory.MemoryBlock
    +
    +/**
    + * A RowQueue is an FIFO queue for UnsafeRow.
    + */
    +private[python] trait RowQueue {
    +  /**
    +   * Add a row to the end of it, returns true iff the row has added into it.
    +   */
    +  def add(row: UnsafeRow): Boolean
    +
    +  /**
    +   * Retrieve and remove the first row, returns null if it's empty.
    +   *
    +   * It can only be called after add is called.
    +   */
    +  def remove(): UnsafeRow
    +
    +  /**
    +   * Cleanup all the resources.
    +   */
    +  def close(): Unit
    +}
    +
    +/**
    + * A RowQueue that is based on in-memory page. UnsafeRows are appended into it until
it's full.
    + * Another thread could read from it at the same time (behind the writer).
    + *
    + * The format of UnsafeRow in page:
    + * [4 bytes to hold length of record (N)] [N bytes to hold record] [...]
    + */
    +private[python] abstract class InMemoryRowQueue(val page: MemoryBlock, numFields: Int)
    +  extends RowQueue {
    +  private val base: AnyRef = page.getBaseObject
    +  private val endOfPage: Long = page.getBaseOffset + page.size
    +  // the first location where a new row would be written
    +  private var writeOffset = page.getBaseOffset
    +  // points to the start of the next row to read
    +  private var readOffset = page.getBaseOffset
    +  private val resultRow = new UnsafeRow(numFields)
    +
    +  def add(row: UnsafeRow): Boolean = {
    +    val size = row.getSizeInBytes
    +    if (writeOffset + 4 + size > endOfPage) {
    +      // if there is not enough space in this page to hold the new record
    +      if (writeOffset + 4 <= endOfPage) {
    +        // if there's extra space at the end of the page, store a special "end-of-page"
length (-1)
    +        Platform.putInt(base, writeOffset, -1)
    +      }
    +      false
    +    } else {
    +      Platform.putInt(base, writeOffset, size)
    +      Platform.copyMemory(row.getBaseObject, row.getBaseOffset, base, writeOffset + 4,
size)
    +      writeOffset += 4 + size
    +      true
    +    }
    +  }
    +
    +  def remove(): UnsafeRow = {
    +    if (readOffset + 4 > endOfPage || Platform.getInt(base, readOffset) < 0) {
    +      null
    +    } else {
    +      val size = Platform.getInt(base, readOffset)
    +      resultRow.pointTo(base, readOffset + 4, size)
    +      readOffset += 4 + size
    +      resultRow
    +    }
    +  }
    +}
    +
    +/**
    + * A RowQueue that is backed by a file on disk. This queue will stop accepting new rows
once any
    + * reader has begun reading from the queue.
    + */
    +private[python] case class DiskRowQueue(file: File, fields: Int) extends RowQueue {
    +  private var fout = new FileOutputStream(file.toString)
    +  private var out = new DataOutputStream(new BufferedOutputStream(fout))
    +  private var unreadBytes = 0L
    +
    +  private var fin: FileInputStream = _
    +  private var in: DataInputStream = _
    +  private val resultRow = new UnsafeRow(fields)
    +
    +  def add(row: UnsafeRow): Boolean = synchronized {
    +    if (out == null) {
    +      // Another thread is reading, stop writing this one
    +      return false
    +    }
    +    out.writeInt(row.getSizeInBytes)
    +    out.write(row.getBytes)
    +    unreadBytes += 4 + row.getSizeInBytes
    +    true
    +  }
    +
    +  def remove(): UnsafeRow = synchronized {
    +    if (out != null) {
    +      out.close()
    +      out = null
    +      fout.close()
    +      fout = null
    +
    +      fin = new FileInputStream(file.toString)
    +      in = new DataInputStream(new BufferedInputStream(fin))
    +    }
    +
    +    if (unreadBytes > 0) {
    +      val size = in.readInt()
    +      val bytes = new Array[Byte](size)
    +      in.readFully(bytes)
    +      unreadBytes -= 4 + size
    +      resultRow.pointTo(bytes, size)
    +      resultRow
    +    } else {
    +      null
    +    }
    +  }
    +
    +  def close(): Unit = synchronized {
    +    Closeables.close(fout, true)
    +    fout = null
    +    Closeables.close(fin, true)
    +    fin = null
    +    if (file.exists()) {
    +      file.delete()
    +    }
    +  }
    +}
    +
    +/**
    + * A RowQueue that has a list of RowQueues, which could be in memory or disk.
    + *
    + * HybridRowQueue could be safely appended in one thread, and pulled in another thread
in the same
    + * time.
    + */
    +private[python] case class HybridRowQueue(
    +    memManager: TaskMemoryManager,
    +    tempDir: File,
    +    numFields: Int)
    +  extends MemoryConsumer(memManager) with RowQueue {
    +
    +  // Each buffer should have at least one row
    +  private var queues = new java.util.LinkedList[RowQueue]()
    +
    +  private var writing: RowQueue = _
    +  private var reading: RowQueue = _
    +
    +  // exposed for testing
    +  private[python] def numQueues(): Int = queues.size()
    +
    +  def spill(size: Long, trigger: MemoryConsumer): Long = {
    +    if (trigger == this) {
    +      // When it's triggered by itself, it should write upcoming rows into disk instead
of copying
    +      // the rows already in the queue.
    +      return 0L
    +    }
    +    var released = 0L
    +    synchronized {
    +      // poll out all the buffers and add them back in the same order to make sure that
the rows
    +      // are in correct order.
    +      val iter = queues.iterator()
    +      val newQueues = new java.util.LinkedList[RowQueue]()
    +      while (iter.hasNext) {
    +        val queue = queues.remove()
    --- End diff --
    
    I think this block is still slightly confusing because it's calling `iter.hasNext()` but
never calls `iter.nex()`.
    
    If `LinkedList`'s iterator implements `Iterator.remove()` then I think it would be preferable
to use that.


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