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From "Marcelo Vanzin (JIRA)" <j...@apache.org>
Subject [jira] [Assigned] (SPARK-25869) Spark on YARN: the original diagnostics is missing when job failed maxAppAttempts times
Date Tue, 18 Dec 2018 20:46:00 GMT

     [ https://issues.apache.org/jira/browse/SPARK-25869?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Marcelo Vanzin reassigned SPARK-25869:
--------------------------------------

    Assignee: Marcelo Vanzin

> Spark on YARN: the original diagnostics is missing when job failed maxAppAttempts times
> ---------------------------------------------------------------------------------------
>
>                 Key: SPARK-25869
>                 URL: https://issues.apache.org/jira/browse/SPARK-25869
>             Project: Spark
>          Issue Type: Bug
>          Components: YARN
>    Affects Versions: 2.1.1
>            Reporter: Yeliang Cang
>            Assignee: Marcelo Vanzin
>            Priority: Major
>
> When configure spark on yarn, I submit job using below command:
> {code}
>  spark-submit  --class org.apache.spark.examples.SparkPi     --master yarn    
--deploy-mode cluster     --driver-memory 127m  --driver-cores 1   --executor-memory 2048m
    --executor-cores 1    --num-executors 10  --queue root.mr --conf spark.testing.reservedMemory=1048576
--conf spark.yarn.executor.memoryOverhead=50 --conf spark.yarn.driver.memoryOverhead=50 /opt/ZDH/parcels/lib/spark/examples/jars/spark-examples*
10000
> {code}
> Apparently, the driver memory is not enough, but this can not be seen in spark client
log:
> {code}
> 2018-10-29 19:28:34,658 INFO org.apache.spark.deploy.yarn.Client: Application report
for application_1540536615315_0013 (state: ACCEPTED)
> 2018-10-29 19:28:35,660 INFO org.apache.spark.deploy.yarn.Client: Application report
for application_1540536615315_0013 (state: RUNNING)
> 2018-10-29 19:28:35,660 INFO org.apache.spark.deploy.yarn.Client:
>  client token: N/A
>  diagnostics: N/A
>  ApplicationMaster host: 10.43.183.143
>  ApplicationMaster RPC port: 0
>  queue: root.mr
>  start time: 1540812501560
>  final status: UNDEFINED
>  tracking URL: http://zdh141:8088/proxy/application_1540536615315_0013/
>  user: mr
> 2018-10-29 19:28:36,663 INFO org.apache.spark.deploy.yarn.Client: Application report
for application_1540536615315_0013 (state: FINISHED)
> 2018-10-29 19:28:36,663 INFO org.apache.spark.deploy.yarn.Client:
>  client token: N/A
>  diagnostics: Shutdown hook called before final status was reported.
>  ApplicationMaster host: 10.43.183.143
>  ApplicationMaster RPC port: 0
>  queue: root.mr
>  start time: 1540812501560
>  final status: FAILED
>  tracking URL: http://zdh141:8088/proxy/application_1540536615315_0013/
>  user: mr
> Exception in thread "main" org.apache.spark.SparkException: Application application_1540536615315_0013
finished with failed status
>  at org.apache.spark.deploy.yarn.Client.run(Client.scala:1137)
>  at org.apache.spark.deploy.yarn.Client$.main(Client.scala:1183)
>  at org.apache.spark.deploy.yarn.Client.main(Client.scala)
>  at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>  at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>  at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>  at java.lang.reflect.Method.invoke(Method.java:498)
>  at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:775)
>  at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:180)
>  at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:205)
>  at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:119)
>  at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
> 2018-10-29 19:28:36,694 INFO org.apache.spark.util.ShutdownHookManager: Shutdown hook
called
> 2018-10-29 19:28:36,695 INFO org.apache.spark.util.ShutdownHookManager: Deleting directory
/tmp/spark-96077be5-0dfa-496d-a6a0-96e83393a8d9
> {code}
>  
>  
> Solution: after apply the patch, spark client log can be shown as:
> {code}
> 2018-10-29 19:27:32,962 INFO org.apache.spark.deploy.yarn.Client: Application report
for application_1540536615315_0012 (state: RUNNING)
> 2018-10-29 19:27:32,962 INFO org.apache.spark.deploy.yarn.Client:
>  client token: N/A
>  diagnostics: N/A
>  ApplicationMaster host: 10.43.183.143
>  ApplicationMaster RPC port: 0
>  queue: root.mr
>  start time: 1540812436656
>  final status: UNDEFINED
>  tracking URL: http://zdh141:8088/proxy/application_1540536615315_0012/
>  user: mr
> 2018-10-29 19:27:33,964 INFO org.apache.spark.deploy.yarn.Client: Application report
for application_1540536615315_0012 (state: FAILED)
> 2018-10-29 19:27:33,964 INFO org.apache.spark.deploy.yarn.Client:
>  client token: N/A
>  diagnostics: Application application_1540536615315_0012 failed 2 times due to AM Container
for appattempt_1540536615315_0012_000002 exited with exitCode: -104
> For more detailed output, check application tracking page:http://zdh141:8088/cluster/app/application_1540536615315_0012Then,
click on links to logs of each attempt.
> Diagnostics: virtual memory used. Killing container.
> Dump of the process-tree for container_e53_1540536615315_0012_02_000001 :
>  |- PID PPID PGRPID SESSID CMD_NAME USER_MODE_TIME(MILLIS) SYSTEM_TIME(MILLIS) VMEM_USAGE(BYTES)
RSSMEM_USAGE(PAGES) FULL_CMD_LINE
>  |- 1532 1528 1528 1528 (java) 1209 174 3472551936 65185 /usr/java/jdk/bin/java -server
-Xmx127m -Djava.io.tmpdir=/data3/zdh/yarn/local/usercache/mr/appcache/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001/tmp
-Xss32M -XX:MetaspaceSize=128M -XX:MaxMetaspaceSize=512M -Dspark.yarn.app.container.log.dir=/data1/zdh/yarn/logs/userlogs/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001
org.apache.spark.deploy.yarn.ApplicationMaster --class org.apache.spark.examples.SparkPi --jar
file:/opt/ZDH/parcels/lib/spark/examples/jars/spark-examples_2.11-2.2.1-zdh8.5.1.jar --arg
10000 --properties-file /data3/zdh/yarn/local/usercache/mr/appcache/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001/__spark_conf__/__spark_conf__.properties
>  |- 1528 1526 1528 1528 (bash) 0 0 108642304 309 /bin/bash -c LD_LIBRARY_PATH=/opt/ZDH/parcels/lib/hadoop/lib/native:
/usr/java/jdk/bin/java -server -Xmx127m -Djava.io.tmpdir=/data3/zdh/yarn/local/usercache/mr/appcache/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001/tmp
'-Xss32M' '-XX:MetaspaceSize=128M' '-XX:MaxMetaspaceSize=512M' -Dspark.yarn.app.container.log.dir=/data1/zdh/yarn/logs/userlogs/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001
org.apache.spark.deploy.yarn.ApplicationMaster --class 'org.apache.spark.examples.SparkPi'
--jar file:/opt/ZDH/parcels/lib/spark/examples/jars/spark-examples_2.11-2.2.1-zdh8.5.1.jar
--arg '10000' --properties-file /data3/zdh/yarn/local/usercache/mr/appcache/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001/__spark_conf__/__spark_conf__.properties
1> /data1/zdh/yarn/logs/userlogs/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001/stdout
2> /data1/zdh/yarn/logs/userlogs/application_1540536615315_0012/container_e53_1540536615315_0012_02_000001/stderr
> Container killed on request. Exit code is 143
> Container exited with a non-zero exit code 143
> PmemUsageMBsMaxMBs is: 255.0 MBFailing this attempt. Failing the application.
>  ApplicationMaster host: N/A
>  ApplicationMaster RPC port: -1
>  queue: root.mr
>  start time: 1540812436656
>  final status: FAILED
>  tracking URL: http://zdh141:8088/cluster/app/application_1540536615315_0012
>  user: mr
> 2018-10-29 19:27:34,542 INFO org.apache.spark.deploy.yarn.Client: Deleted staging directory
hdfs://nameservice/user/mr/.sparkStaging/application_1540536615315_0012
> Exception in thread "main" org.apache.spark.SparkException: Application application_1540536615315_0012
finished with failed status
>  at org.apache.spark.deploy.yarn.Client.run(Client.scala:1137)
>  at org.apache.spark.deploy.yarn.Client$.main(Client.scala:1183)
>  at org.apache.spark.deploy.yarn.Client.main(Client.scala)
>  at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>  at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>  at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>  at java.lang.reflect.Method.invoke(Method.java:498)
>  at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:775)
>  at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:180)
>  at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:205)
>  at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:119)
>  at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
> 2018-10-29 19:27:34,548 INFO org.apache.spark.util.ShutdownHookManager: Shutdown hook
called
> 2018-10-29 19:27:34,549 INFO org.apache.spark.util.ShutdownHookManager: Deleting directory
/tmp/spark-ce35f2ad-ec1f-4173-9441-163e2482ed61
> {code}
> Now we can see the true reason for job failure from client!



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