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From "Deepansh (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (SPARK-23650) Slow SparkR udf (dapply)
Date Mon, 02 Apr 2018 04:53:00 GMT

    [ https://issues.apache.org/jira/browse/SPARK-23650?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16421933#comment-16421933
] 

Deepansh commented on SPARK-23650:
----------------------------------

@[~felixcheung] following up on above discussion.

> Slow SparkR udf (dapply)
> ------------------------
>
>                 Key: SPARK-23650
>                 URL: https://issues.apache.org/jira/browse/SPARK-23650
>             Project: Spark
>          Issue Type: Improvement
>          Components: Spark Shell, SparkR, Structured Streaming
>    Affects Versions: 2.2.0
>            Reporter: Deepansh
>            Priority: Major
>         Attachments: packageReload.txt, read_model_in_udf.txt, sparkR_log2.txt, sparkRlag.txt
>
>
> For eg, I am getting streams from Kafka and I want to implement a model made in R for
those streams. For this, I am using dapply.
> My code is:
> iris_model <- readRDS("./iris_model.rds")
> randomBr <- SparkR:::broadcast(sc, iris_model)
> kafka <- read.stream("kafka",subscribe = "source", kafka.bootstrap.servers = "localhost:9092",
topic = "source")
> lines<- select(kafka, cast(kafka$value, "string"))
> schema<-schema(lines)
> df1<-dapply(lines,function(x){
> i_model<-SparkR:::value(randomMatBr)
> for (row in 1:nrow(x))
> { y<-fromJSON(as.character(x[row,"value"])) y$predict=predict(i_model,y) y<-toJSON(y)
x[row,"value"] = y }
> x
> },schema)
> Every time when Kafka streams are fetched the dapply method creates new runner thread
and ships the variables again, which causes a huge lag(~2s for shipping model) every time.
I even tried without broadcast variables but it takes same time to ship variables. Can some
other techniques be applied to improve its performance?



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