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From "Wenchen Fan (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (SPARK-21190) SPIP: Vectorized UDFs in Python
Date Wed, 26 Jul 2017 00:53:00 GMT

    [ https://issues.apache.org/jira/browse/SPARK-21190?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16101014#comment-16101014
] 

Wenchen Fan commented on SPARK-21190:
-------------------------------------

I think (2) is already done by {{ArrowColumnVector}} (written by [~ueshin]), and you can just
call `ColumnarBatch.rowIterator` for the conversion.

> SPIP: Vectorized UDFs in Python
> -------------------------------
>
>                 Key: SPARK-21190
>                 URL: https://issues.apache.org/jira/browse/SPARK-21190
>             Project: Spark
>          Issue Type: New Feature
>          Components: PySpark, SQL
>    Affects Versions: 2.2.0
>            Reporter: Reynold Xin
>            Assignee: Reynold Xin
>              Labels: SPIP
>         Attachments: SPIPVectorizedUDFsforPython (1).pdf
>
>
> *Background and Motivation*
> Python is one of the most popular programming languages among Spark users. Spark currently
exposes a row-at-a-time interface for defining and executing user-defined functions (UDFs).
This introduces high overhead in serialization and deserialization, and also makes it difficult
to leverage Python libraries (e.g. numpy, Pandas) that are written in native code.
>  
> This proposal advocates introducing new APIs to support vectorized UDFs in Python, in
which a block of data is transferred over to Python in some columnar format for execution.
>  
>  
> *Target Personas*
> Data scientists, data engineers, library developers.
>  
> *Goals*
> - Support vectorized UDFs that apply on chunks of the data frame
> - Low system overhead: Substantially reduce serialization and deserialization overhead
when compared with row-at-a-time interface
> - UDF performance: Enable users to leverage native libraries in Python (e.g. numpy, Pandas)
for data manipulation in these UDFs
>  
> *Non-Goals*
> The following are explicitly out of scope for the current SPIP, and should be done in
future SPIPs. Nonetheless, it would be good to consider these future use cases during API
design, so we can achieve some consistency when rolling out new APIs.
>  
> - Define block oriented UDFs in other languages (that are not Python).
> - Define aggregate UDFs
> - Tight integration with machine learning frameworks
>  
> *Proposed API Changes*
> The following sketches some possibilities. I haven’t spent a lot of time thinking about
the API (wrote it down in 5 mins) and I am not attached to this design at all. The main purpose
of the SPIP is to get feedback on use cases and see how they can impact API design.
>  
> A few things to consider are:
>  
> 1. Python is dynamically typed, whereas DataFrames/SQL requires static, analysis time
typing. This means users would need to specify the return type of their UDFs.
>  
> 2. Ratio of input rows to output rows. We propose initially we require number of output
rows to be the same as the number of input rows. In the future, we can consider relaxing this
constraint with support for vectorized aggregate UDFs.
> 3. How do we handle null values, since Pandas doesn't have the concept of nulls?
>  
> Proposed API sketch (using examples):
>  
> Use case 1. A function that defines all the columns of a DataFrame (similar to a “map”
function):
>  
> {code}
> @spark_udf(some way to describe the return schema)
> def my_func_on_entire_df(input):
>   """ Some user-defined function.
>  
>   :param input: A Pandas DataFrame with two columns, a and b.
>   :return: :class: A Pandas data frame.
>   """
>   input[c] = input[a] + input[b]
>   Input[d] = input[a] - input[b]
>   return input
>  
> spark.range(1000).selectExpr("id a", "id / 2 b")
>   .mapBatches(my_func_on_entire_df)
> {code}
>  
> Use case 2. A function that defines only one column (similar to existing UDFs):
>  
> {code}
> @spark_udf(some way to describe the return schema)
> def my_func_that_returns_one_column(input):
>   """ Some user-defined function.
>  
>   :param input: A Pandas DataFrame with two columns, a and b.
>   :return: :class: A numpy array
>   """
>   return input[a] + input[b]
>  
> my_func = udf(my_func_that_returns_one_column)
>  
> df = spark.range(1000).selectExpr("id a", "id / 2 b")
> df.withColumn("c", my_func(df.a, df.b))
> {code}
>  
>  
>  
> *Optional Design Sketch*
> I’m more concerned about getting proper feedback for API design. The implementation
should be pretty straightforward and is not a huge concern at this point. We can leverage
the same implementation for faster toPandas (using Arrow).
>  
>  
> *Optional Rejected Designs*
> See above.
>  
>  
>  
>  



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