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From "Michael Armbrust (JIRA)" <j...@apache.org>
Subject [jira] [Updated] (SPARK-9879) OOM in LIMIT clause with large number
Date Tue, 03 Nov 2015 11:07:27 GMT

     [ https://issues.apache.org/jira/browse/SPARK-9879?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Michael Armbrust updated SPARK-9879:
------------------------------------
    Target Version/s:   (was: 1.6.0)

> OOM in LIMIT clause with large number
> -------------------------------------
>
>                 Key: SPARK-9879
>                 URL: https://issues.apache.org/jira/browse/SPARK-9879
>             Project: Spark
>          Issue Type: Bug
>          Components: SQL
>            Reporter: Cheng Hao
>
> {code}
> create table spark.tablsetest as select * from dpa_ord_bill_tf order by member_id limit
20000000;
> {code}
>          
> {code}
> spark-sql --driver-memory 48g --executor-memory 24g --driver-java-options -XX:PermSize=1024M
-XX:MaxPermSize=2048M
> Error logs
> 15/07/27 10:22:43 ERROR ActorSystemImpl: Uncaught fatal error from thread [sparkDriver-akka.actor.default-dispatcher-20]shutting
down ActorSystem [sparkDriver]
> java.lang.OutOfMemoryError: Requested array size exceeds VM limit
> at java.util.Arrays.copyOf(Arrays.java:2271)
> at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:113)
> at java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
> at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:140)
> at java.io.ObjectOutputStream$BlockDataOutputStream.write(ObjectOutputStream.java:1852)
> at java.io.ObjectOutputStream.write(ObjectOutputStream.java:708)
> at org.apache.spark.util.Utils$$anon$2.write(Utils.scala:134)
> at com.esotericsoftware.kryo.io.Output.flush(Output.java:155)
> at com.esotericsoftware.kryo.io.Output.close(Output.java:165)
> at org.apache.spark.serializer.KryoSerializationStream.close(KryoSerializer.scala:162)
> at org.apache.spark.util.Utils$.serializeViaNestedStream(Utils.scala:139)
> at org.apache.spark.rdd.ParallelCollectionPartition$$anonfun$writeObject$1.apply$mcV$sp(ParallelCollectionRDD.scala:65)
> at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1239)
> at org.apache.spark.rdd.ParallelCollectionPartition.writeObject(ParallelCollectionRDD.scala:51)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:988)
> at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1495)
> at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
> at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
> at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
> at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
> at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
> at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
> at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:347)
> at org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:44)
> at org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:81)
> at org.apache.spark.scheduler.Task$.serializeWithDependencies(Task.scala:168)
> at org.apache.spark.scheduler.TaskSetManager.resourceOffer(TaskSetManager.scala:467)
> at org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$org$apache$spark$scheduler$TaskSchedulerImpl$$resourceOfferSingleTaskSet$1.apply$mcVI$sp(TaskSchedulerImpl.scala:231)
> 15/07/27 10:22:43 ERROR ErrorMonitor: Uncaught fatal error from thread [sparkDriver-akka.actor.default-dispatcher-20]shutting
down ActorSystem [sparkDriver]
> java.lang.OutOfMemoryError: Requested array size exceeds VM limit
> at java.util.Arrays.copyOf(Arrays.java:2271)
> at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:113)
> at java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
> at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:140)
> at java.io.ObjectOutputStream$BlockDataOutputStream.write(ObjectOutputStream.java:1852)
> at java.io.ObjectOutputStream.write(ObjectOutputStream.java:708)
> at org.apache.spark.util.Utils$$anon$2.write(Utils.scala:134)
> at com.esotericsoftware.kryo.io.Output.flush(Output.java:155)
> at com.esotericsoftware.kryo.io.Output.close(Output.java:165)
> at org.apache.spark.serializer.KryoSerializationStream.close(KryoSerializer.scala:162)
> at org.apache.spark.util.Utils$.serializeViaNestedStream(Utils.scala:139)
> at org.apache.spark.rdd.ParallelCollectionPartition$$anonfun$writeObject$1.apply$mcV$sp(ParallelCollectionRDD.scala:65)
> at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1239)
> at org.apache.spark.rdd.ParallelCollectionPartition.writeObject(ParallelCollectionRDD.scala:51)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:988)
> at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1495)
> at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
> at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
> at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
> at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
> at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
> at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
> at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:347)
> at org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:44)
> at org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:81)
> at org.apache.spark.scheduler.Task$.serializeWithDependencies(Task.scala:168)
> at org.apache.spark.scheduler.TaskSetManager.resourceOffer(TaskSetManager.scala:467)
> at org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$org$apache$spark$scheduler$TaskSchedulerImpl$$resourceOfferSingleTaskSet$1.apply$mcVI$sp(TaskSchedulerImpl.scala:231)
> 15/07/27 10:22:46 INFO RemoteActorRefProvider$RemotingTerminator: Shutting down remote
daemon.
> 15/07/27 10:22:46 INFO RemoteActorRefProvider$RemotingTerminator: Remote daemon shut
down; proceeding with flushing remote transports.
> 15/07/27 10:22:46 WARN AkkaRpcEndpointRef: Error sending message [message = RemoveBroadcast(2,true)]
in 1 attempts
> akka.pattern.AskTimeoutException: Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764]
had already been terminated.
> at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
> at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
> at org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
> at org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
> at org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
> at org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
> at org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
> at scala.Option.foreach(Option.scala:236)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
> at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
> at org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
> at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
> 15/07/27 10:22:46 INFO RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
> 15/07/27 10:22:49 WARN AkkaRpcEndpointRef: Error sending message [message = RemoveBroadcast(2,true)]
in 2 attempts
> akka.pattern.AskTimeoutException: Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764]
had already been terminated.
> at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
> at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
> at org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
> at org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
> at org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
> at org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
> at org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
> at scala.Option.foreach(Option.scala:236)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
> at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
> at org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
> at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
> 15/07/27 10:22:52 WARN AkkaRpcEndpointRef: Error sending message [message = RemoveBroadcast(2,true)]
in 3 attempts
> akka.pattern.AskTimeoutException: Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764]
had already been terminated.
> at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
> at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
> at org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
> at org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
> at org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
> at org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
> at org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
> at scala.Option.foreach(Option.scala:236)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
> at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
> at org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
> at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
> 15/07/27 10:22:55 ERROR ContextCleaner: Error cleaning broadcast 2
> org.apache.spark.SparkException: Error sending message [message = RemoveBroadcast(2,true)]
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:116)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
> at org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
> at org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
> at org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
> at org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
> at org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
> at scala.Option.foreach(Option.scala:236)
> at org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
> at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
> at org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
> at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
> Caused by: akka.pattern.AskTimeoutException: Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764]
had already been terminated.
> at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
> at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
> at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
> ... 13 more
> {code}



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