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From "Xiaoyu Wang (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (SPARK-10314) [CORE]RDD persist to OFF_HEAP tachyon got block rdd_x_x not found exception when parallelism is big than data split size
Date Wed, 02 Sep 2015 01:33:46 GMT

    [ https://issues.apache.org/jira/browse/SPARK-10314?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14726557#comment-14726557
] 

Xiaoyu Wang commented on SPARK-10314:
-------------------------------------

I resubmit the pull request on the master branch

> [CORE]RDD persist to OFF_HEAP tachyon got block rdd_x_x not found exception when parallelism
is big than data split size
> ------------------------------------------------------------------------------------------------------------------------
>
>                 Key: SPARK-10314
>                 URL: https://issues.apache.org/jira/browse/SPARK-10314
>             Project: Spark
>          Issue Type: Bug
>          Components: Block Manager
>    Affects Versions: 1.4.1
>         Environment: Spark 1.4.1,Hadoop 2.6.0,Tachyon 0.6.4
>            Reporter: Xiaoyu Wang
>            Priority: Minor
>
> RDD persist to OFF_HEAP tachyon got block rdd_x_x not found exception when parallelism
is big than data split size
> {code}
> val rdd = sc.parallelize(List(1, 2),2)
> rdd.persist(org.apache.spark.storage.StorageLevel.OFF_HEAP)
> rdd.count()
> {code}
> is ok.
> {code}
> val rdd = sc.parallelize(List(1, 2),3)
> rdd.persist(org.apache.spark.storage.StorageLevel.OFF_HEAP)
> rdd.count()
> {code}
> got exceptoin:
> {noformat}
> 15/08/27 17:53:07 INFO SparkContext: Starting job: count at <console>:24
> 15/08/27 17:53:07 INFO DAGScheduler: Got job 0 (count at <console>:24) with 3 output
partitions (allowLocal=false)
> 15/08/27 17:53:07 INFO DAGScheduler: Final stage: ResultStage 0(count at <console>:24)
> 15/08/27 17:53:07 INFO DAGScheduler: Parents of final stage: List()
> 15/08/27 17:53:07 INFO DAGScheduler: Missing parents: List()
> 15/08/27 17:53:07 INFO DAGScheduler: Submitting ResultStage 0 (ParallelCollectionRDD[0]
at parallelize at <console>:21), which has no missing parents
> 15/08/27 17:53:07 INFO MemoryStore: ensureFreeSpace(1096) called with curMem=0, maxMem=741196431
> 15/08/27 17:53:07 INFO MemoryStore: Block broadcast_0 stored as values in memory (estimated
size 1096.0 B, free 706.9 MB)
> 15/08/27 17:53:07 INFO MemoryStore: ensureFreeSpace(788) called with curMem=1096, maxMem=741196431
> 15/08/27 17:53:07 INFO MemoryStore: Block broadcast_0_piece0 stored as bytes in memory
(estimated size 788.0 B, free 706.9 MB)
> 15/08/27 17:53:07 INFO BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:43776
(size: 788.0 B, free: 706.9 MB)
> 15/08/27 17:53:07 INFO SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:874
> 15/08/27 17:53:07 INFO DAGScheduler: Submitting 3 missing tasks from ResultStage 0 (ParallelCollectionRDD[0]
at parallelize at <console>:21)
> 15/08/27 17:53:07 INFO TaskSchedulerImpl: Adding task set 0.0 with 3 tasks
> 15/08/27 17:53:07 INFO TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost,
PROCESS_LOCAL, 1269 bytes)
> 15/08/27 17:53:07 INFO TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost,
PROCESS_LOCAL, 1270 bytes)
> 15/08/27 17:53:07 INFO TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost,
PROCESS_LOCAL, 1270 bytes)
> 15/08/27 17:53:07 INFO Executor: Running task 2.0 in stage 0.0 (TID 2)
> 15/08/27 17:53:07 INFO Executor: Running task 0.0 in stage 0.0 (TID 0)
> 15/08/27 17:53:07 INFO Executor: Running task 1.0 in stage 0.0 (TID 1)
> 15/08/27 17:53:07 INFO CacheManager: Partition rdd_0_2 not found, computing it
> 15/08/27 17:53:07 INFO CacheManager: Partition rdd_0_1 not found, computing it
> 15/08/27 17:53:07 INFO CacheManager: Partition rdd_0_0 not found, computing it
> 15/08/27 17:53:07 INFO ExternalBlockStore: ExternalBlockStore started
> 15/08/27 17:53:08 WARN : tachyon.home is not set. Using /mnt/tachyon_default_home as
the default value.
> 15/08/27 17:53:08 INFO : Tachyon client (version 0.6.4) is trying to connect master @
localhost/127.0.0.1:19998
> 15/08/27 17:53:08 INFO : User registered at the master localhost/127.0.0.1:19998 got
UserId 109
> 15/08/27 17:53:08 INFO TachyonBlockManager: Created tachyon directory at /spark/spark-c6ec419f-7c7d-48a6-8448-c2431e761ea5/driver/spark-tachyon-20150827175308-6aa5
> 15/08/27 17:53:08 INFO : Trying to get local worker host : localhost
> 15/08/27 17:53:08 INFO : Connecting local worker @ localhost/127.0.0.1:29998
> 15/08/27 17:53:08 INFO : Folder /mnt/ramdisk/tachyonworker/users/109 was created!
> 15/08/27 17:53:08 INFO : /mnt/ramdisk/tachyonworker/users/109/4386235351040 was created!
> 15/08/27 17:53:08 INFO : /mnt/ramdisk/tachyonworker/users/109/4388382834688 was created!
> 15/08/27 17:53:08 INFO BlockManagerInfo: Added rdd_0_0 on ExternalBlockStore on localhost:43776
(size: 0.0 B)
> 15/08/27 17:53:08 INFO BlockManagerInfo: Added rdd_0_1 on ExternalBlockStore on localhost:43776
(size: 2.0 B)
> 15/08/27 17:53:08 INFO BlockManagerInfo: Added rdd_0_2 on ExternalBlockStore on localhost:43776
(size: 2.0 B)
> 15/08/27 17:53:08 INFO BlockManager: Found block rdd_0_1 locally
> 15/08/27 17:53:08 INFO BlockManager: Found block rdd_0_2 locally
> 15/08/27 17:53:08 INFO Executor: Finished task 2.0 in stage 0.0 (TID 2). 1208 bytes result
sent to driver
> 15/08/27 17:53:08 INFO Executor: Finished task 1.0 in stage 0.0 (TID 1). 1208 bytes result
sent to driver
> 15/08/27 17:53:08 INFO TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 278
ms on localhost (1/3)
> 15/08/27 17:53:08 INFO TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 275
ms on localhost (2/3)
> 15/08/27 17:53:08 ERROR TransportRequestHandler: Error while invoking RpcHandler#receive()
on RPC id 7732829366749232329
> org.apache.spark.storage.BlockNotFoundException: Block rdd_0_0 not found
>         at org.apache.spark.storage.BlockManager.getBlockData(BlockManager.scala:308)
>         at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$2.apply(NettyBlockRpcServer.scala:57)
>         at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$2.apply(NettyBlockRpcServer.scala:57)
>         at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
>         at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
>         at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
>         at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
>         at scala.collection.TraversableLike$class.map(TraversableLike.scala:244)
>         at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:108)
>         at org.apache.spark.network.netty.NettyBlockRpcServer.receive(NettyBlockRpcServer.scala:57)
>         at org.apache.spark.network.server.TransportRequestHandler.processRpcRequest(TransportRequestHandler.java:114)
>         at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:87)
>         at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:101)
>         at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:51)
>         at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:254)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:163)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:787)
>         at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:130)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
>         at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
>         at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116)
>         at java.lang.Thread.run(Thread.java:745)
> 15/08/27 17:53:08 ERROR OneForOneBlockFetcher: Failed while starting block fetches
> java.lang.RuntimeException: org.apache.spark.storage.BlockNotFoundException: Block rdd_0_0
not found
>         at org.apache.spark.storage.BlockManager.getBlockData(BlockManager.scala:308)
>         at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$2.apply(NettyBlockRpcServer.scala:57)
>         at org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$2.apply(NettyBlockRpcServer.scala:57)
>         at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
>         at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
>         at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
>         at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
>         at scala.collection.TraversableLike$class.map(TraversableLike.scala:244)
>         at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:108)
>         at org.apache.spark.network.netty.NettyBlockRpcServer.receive(NettyBlockRpcServer.scala:57)
>         at org.apache.spark.network.server.TransportRequestHandler.processRpcRequest(TransportRequestHandler.java:114)
>         at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:87)
>         at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:101)
>         at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:51)
>         at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:254)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:163)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:787)
>         at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:130)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
>         at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
>         at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116)
>         at java.lang.Thread.run(Thread.java:745)
>         at org.apache.spark.network.client.TransportResponseHandler.handle(TransportResponseHandler.java:162)
>         at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:103)
>         at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:51)
>         at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:254)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:163)
>         at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333)
>         at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319)
>         at io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:787)
>         at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:130)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
>         at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
>         at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
>         at io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116)
>         at java.lang.Thread.run(Thread.java:745)
> {noformat}



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