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From joshro...@apache.org
Subject spark git commit: SPARK-4687. Add a recursive option to the addFile API
Date Thu, 05 Feb 2015 18:16:24 GMT
Repository: spark
Updated Branches:
  refs/heads/branch-1.3 40746749a -> c22ccc07c


SPARK-4687. Add a recursive option to the addFile API

This adds a recursive option to the addFile API to satisfy Hive's needs.  It only allows specifying
HDFS dirs that will be copied down on every executor.

There are a couple outstanding questions.
* Should we allow specifying local dirs as well?  The best way to do this would probably be
to archive them.  The drawback is that it would require a fair bit of code that I don't know
of any current use cases for.
* The addFiles implementation has a caching component that I don't entirely understand.  What
events are we caching between?  AFAICT it's users calling addFile on the same file in the
same app at different times?  Do we want/need to add something similar for addDirectory.
*  The addFiles implementation will check to see if an added file already exists and has the
same contents.  I imagine we want the same behavior, so planning to add this unless people
think otherwise.

I plan to add some tests if people are OK with the approach.

Author: Sandy Ryza <sandy@cloudera.com>

Closes #3670 from sryza/sandy-spark-4687 and squashes the following commits:

f9fc77f [Sandy Ryza] Josh's comments
70cd24d [Sandy Ryza] Add another test
13da824 [Sandy Ryza] Revert executor changes
38bf94d [Sandy Ryza] Marcelo's comments
ca83849 [Sandy Ryza] Add addFile test
1941be3 [Sandy Ryza] Fix test and avoid HTTP server in local mode
31f15a9 [Sandy Ryza] Use cache recursively and fix some compile errors
0239c3d [Sandy Ryza] Change addDirectory to addFile with recursive
46fe70a [Sandy Ryza] SPARK-4687. Add a addDirectory API

(cherry picked from commit c4b1108c3f9658adebbdf8508d325528c3206f16)
Signed-off-by: Josh Rosen <joshrosen@databricks.com>


Project: http://git-wip-us.apache.org/repos/asf/spark/repo
Commit: http://git-wip-us.apache.org/repos/asf/spark/commit/c22ccc07
Tree: http://git-wip-us.apache.org/repos/asf/spark/tree/c22ccc07
Diff: http://git-wip-us.apache.org/repos/asf/spark/diff/c22ccc07

Branch: refs/heads/branch-1.3
Commit: c22ccc07c50d4aaead98918dbb7c98dd520cdc6a
Parents: 4074674
Author: Sandy Ryza <sandy@cloudera.com>
Authored: Thu Feb 5 10:15:55 2015 -0800
Committer: Josh Rosen <joshrosen@databricks.com>
Committed: Thu Feb 5 10:16:17 2015 -0800

----------------------------------------------------------------------
 .../scala/org/apache/spark/SparkContext.scala   | 68 ++++++++++++---
 .../scala/org/apache/spark/util/Utils.scala     | 88 ++++++++++++++++----
 .../org/apache/spark/SparkContextSuite.scala    | 77 +++++++++++++++++
 .../org/apache/spark/util/UtilsSuite.scala      | 31 +++++++
 4 files changed, 237 insertions(+), 27 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/spark/blob/c22ccc07/core/src/main/scala/org/apache/spark/SparkContext.scala
----------------------------------------------------------------------
diff --git a/core/src/main/scala/org/apache/spark/SparkContext.scala b/core/src/main/scala/org/apache/spark/SparkContext.scala
index a7adddb..24490fd 100644
--- a/core/src/main/scala/org/apache/spark/SparkContext.scala
+++ b/core/src/main/scala/org/apache/spark/SparkContext.scala
@@ -25,29 +25,37 @@ import java.net.URI
 import java.util.{Arrays, Properties, UUID}
 import java.util.concurrent.atomic.AtomicInteger
 import java.util.UUID.randomUUID
+
 import scala.collection.{Map, Set}
 import scala.collection.JavaConversions._
 import scala.collection.generic.Growable
 import scala.collection.mutable.HashMap
 import scala.reflect.{ClassTag, classTag}
+
+import akka.actor.Props
+
 import org.apache.hadoop.conf.Configuration
 import org.apache.hadoop.fs.Path
-import org.apache.hadoop.io.{ArrayWritable, BooleanWritable, BytesWritable, DoubleWritable,
FloatWritable, IntWritable, LongWritable, NullWritable, Text, Writable}
-import org.apache.hadoop.mapred.{FileInputFormat, InputFormat, JobConf, SequenceFileInputFormat,
TextInputFormat}
+import org.apache.hadoop.io.{ArrayWritable, BooleanWritable, BytesWritable, DoubleWritable,
+  FloatWritable, IntWritable, LongWritable, NullWritable, Text, Writable}
+import org.apache.hadoop.mapred.{FileInputFormat, InputFormat, JobConf, SequenceFileInputFormat,
+  TextInputFormat}
 import org.apache.hadoop.mapreduce.{InputFormat => NewInputFormat, Job => NewHadoopJob}
 import org.apache.hadoop.mapreduce.lib.input.{FileInputFormat => NewFileInputFormat}
+
 import org.apache.mesos.MesosNativeLibrary
-import akka.actor.Props
 
 import org.apache.spark.annotation.{DeveloperApi, Experimental}
 import org.apache.spark.broadcast.Broadcast
 import org.apache.spark.deploy.{LocalSparkCluster, SparkHadoopUtil}
 import org.apache.spark.executor.TriggerThreadDump
-import org.apache.spark.input.{StreamInputFormat, PortableDataStream, WholeTextFileInputFormat,
FixedLengthBinaryInputFormat}
+import org.apache.spark.input.{StreamInputFormat, PortableDataStream, WholeTextFileInputFormat,
+  FixedLengthBinaryInputFormat}
 import org.apache.spark.partial.{ApproximateEvaluator, PartialResult}
 import org.apache.spark.rdd._
 import org.apache.spark.scheduler._
-import org.apache.spark.scheduler.cluster.{CoarseGrainedSchedulerBackend, SparkDeploySchedulerBackend,
SimrSchedulerBackend}
+import org.apache.spark.scheduler.cluster.{CoarseGrainedSchedulerBackend,
+  SparkDeploySchedulerBackend, SimrSchedulerBackend}
 import org.apache.spark.scheduler.cluster.mesos.{CoarseMesosSchedulerBackend, MesosSchedulerBackend}
 import org.apache.spark.scheduler.local.LocalBackend
 import org.apache.spark.storage._
@@ -1016,12 +1024,48 @@ class SparkContext(config: SparkConf) extends Logging with ExecutorAllocationCli
    * filesystems), or an HTTP, HTTPS or FTP URI.  To access the file in Spark jobs,
    * use `SparkFiles.get(fileName)` to find its download location.
    */
-  def addFile(path: String) {
+  def addFile(path: String): Unit = {
+    addFile(path, false)
+  }
+
+  /**
+   * Add a file to be downloaded with this Spark job on every node.
+   * The `path` passed can be either a local file, a file in HDFS (or other Hadoop-supported
+   * filesystems), or an HTTP, HTTPS or FTP URI.  To access the file in Spark jobs,
+   * use `SparkFiles.get(fileName)` to find its download location.
+   *
+   * A directory can be given if the recursive option is set to true. Currently directories
are only
+   * supported for Hadoop-supported filesystems.
+   */
+  def addFile(path: String, recursive: Boolean): Unit = {
     val uri = new URI(path)
-    val key = uri.getScheme match {
-      case null | "file" => env.httpFileServer.addFile(new File(uri.getPath))
-      case "local"       => "file:" + uri.getPath
-      case _             => path
+    val schemeCorrectedPath = uri.getScheme match {
+      case null | "local" => "file:" + uri.getPath
+      case _              => path
+    }
+
+    val hadoopPath = new Path(schemeCorrectedPath)
+    val scheme = new URI(schemeCorrectedPath).getScheme
+    if (!Array("http", "https", "ftp").contains(scheme)) {
+      val fs = hadoopPath.getFileSystem(hadoopConfiguration)
+      if (!fs.exists(hadoopPath)) {
+        throw new FileNotFoundException(s"Added file $hadoopPath does not exist.")
+      }
+      val isDir = fs.isDirectory(hadoopPath)
+      if (!isLocal && scheme == "file" && isDir) {
+        throw new SparkException(s"addFile does not support local directories when not running
" +
+          "local mode.")
+      }
+      if (!recursive && isDir) {
+        throw new SparkException(s"Added file $hadoopPath is a directory and recursive is
not " +
+          "turned on.")
+      }
+    }
+
+    val key = if (!isLocal && scheme == "file") {
+      env.httpFileServer.addFile(new File(uri.getPath))
+    } else {
+      schemeCorrectedPath
     }
     val timestamp = System.currentTimeMillis
     addedFiles(key) = timestamp
@@ -1633,8 +1677,8 @@ class SparkContext(config: SparkConf) extends Logging with ExecutorAllocationCli
       val schedulingMode = getSchedulingMode.toString
       val addedJarPaths = addedJars.keys.toSeq
       val addedFilePaths = addedFiles.keys.toSeq
-      val environmentDetails =
-        SparkEnv.environmentDetails(conf, schedulingMode, addedJarPaths, addedFilePaths)
+      val environmentDetails = SparkEnv.environmentDetails(conf, schedulingMode, addedJarPaths,
+        addedFilePaths)
       val environmentUpdate = SparkListenerEnvironmentUpdate(environmentDetails)
       listenerBus.post(environmentUpdate)
     }

http://git-wip-us.apache.org/repos/asf/spark/blob/c22ccc07/core/src/main/scala/org/apache/spark/util/Utils.scala
----------------------------------------------------------------------
diff --git a/core/src/main/scala/org/apache/spark/util/Utils.scala b/core/src/main/scala/org/apache/spark/util/Utils.scala
index 3c8a0e4..72d15e6 100644
--- a/core/src/main/scala/org/apache/spark/util/Utils.scala
+++ b/core/src/main/scala/org/apache/spark/util/Utils.scala
@@ -386,8 +386,10 @@ private[spark] object Utils extends Logging {
   }
 
   /**
-   * Download a file to target directory. Supports fetching the file in a variety of ways,
-   * including HTTP, HDFS and files on a standard filesystem, based on the URL parameter.
+   * Download a file or directory to target directory. Supports fetching the file in a variety
of
+   * ways, including HTTP, Hadoop-compatible filesystems, and files on a standard filesystem,
based
+   * on the URL parameter. Fetching directories is only supported from Hadoop-compatible
+   * filesystems.
    *
    * If `useCache` is true, first attempts to fetch the file to a local cache that's shared
    * across executors running the same application. `useCache` is used mainly for
@@ -456,7 +458,6 @@ private[spark] object Utils extends Logging {
    *
    * @param url URL that `sourceFile` originated from, for logging purposes.
    * @param in InputStream to download.
-   * @param tempFile File path to download `in` to.
    * @param destFile File path to move `tempFile` to.
    * @param fileOverwrite Whether to delete/overwrite an existing `destFile` that does not
match
    *                      `sourceFile`
@@ -464,9 +465,11 @@ private[spark] object Utils extends Logging {
   private def downloadFile(
       url: String,
       in: InputStream,
-      tempFile: File,
       destFile: File,
       fileOverwrite: Boolean): Unit = {
+    val tempFile = File.createTempFile("fetchFileTemp", null,
+      new File(destFile.getParentFile.getAbsolutePath))
+    logInfo(s"Fetching $url to $tempFile")
 
     try {
       val out = new FileOutputStream(tempFile)
@@ -505,7 +508,7 @@ private[spark] object Utils extends Logging {
       removeSourceFile: Boolean = false): Unit = {
 
     if (destFile.exists) {
-      if (!Files.equal(sourceFile, destFile)) {
+      if (!filesEqualRecursive(sourceFile, destFile)) {
         if (fileOverwrite) {
           logInfo(
             s"File $destFile exists and does not match contents of $url, replacing it with
$url"
@@ -540,13 +543,44 @@ private[spark] object Utils extends Logging {
       Files.move(sourceFile, destFile)
     } else {
       logInfo(s"Copying ${sourceFile.getAbsolutePath} to ${destFile.getAbsolutePath}")
-      Files.copy(sourceFile, destFile)
+      copyRecursive(sourceFile, destFile)
+    }
+  }
+
+  private def filesEqualRecursive(file1: File, file2: File): Boolean = {
+    if (file1.isDirectory && file2.isDirectory) {
+      val subfiles1 = file1.listFiles()
+      val subfiles2 = file2.listFiles()
+      if (subfiles1.size != subfiles2.size) {
+        return false
+      }
+      subfiles1.sortBy(_.getName).zip(subfiles2.sortBy(_.getName)).forall {
+        case (f1, f2) => filesEqualRecursive(f1, f2)
+      }
+    } else if (file1.isFile && file2.isFile) {
+      Files.equal(file1, file2)
+    } else {
+      false
+    }
+  }
+
+  private def copyRecursive(source: File, dest: File): Unit = {
+    if (source.isDirectory) {
+      if (!dest.mkdir()) {
+        throw new IOException(s"Failed to create directory ${dest.getPath}")
+      }
+      val subfiles = source.listFiles()
+      subfiles.foreach(f => copyRecursive(f, new File(dest, f.getName)))
+    } else {
+      Files.copy(source, dest)
     }
   }
 
   /**
-   * Download a file to target directory. Supports fetching the file in a variety of ways,
-   * including HTTP, HDFS and files on a standard filesystem, based on the URL parameter.
+   * Download a file or directory to target directory. Supports fetching the file in a variety
of
+   * ways, including HTTP, Hadoop-compatible filesystems, and files on a standard filesystem,
based
+   * on the URL parameter. Fetching directories is only supported from Hadoop-compatible
+   * filesystems.
    *
    * Throws SparkException if the target file already exists and has different contents than
    * the requested file.
@@ -558,14 +592,11 @@ private[spark] object Utils extends Logging {
       conf: SparkConf,
       securityMgr: SecurityManager,
       hadoopConf: Configuration) {
-    val tempFile = File.createTempFile("fetchFileTemp", null, new File(targetDir.getAbsolutePath))
     val targetFile = new File(targetDir, filename)
     val uri = new URI(url)
     val fileOverwrite = conf.getBoolean("spark.files.overwrite", defaultValue = false)
     Option(uri.getScheme).getOrElse("file") match {
       case "http" | "https" | "ftp" =>
-        logInfo("Fetching " + url + " to " + tempFile)
-
         var uc: URLConnection = null
         if (securityMgr.isAuthenticationEnabled()) {
           logDebug("fetchFile with security enabled")
@@ -583,17 +614,44 @@ private[spark] object Utils extends Logging {
         uc.setReadTimeout(timeout)
         uc.connect()
         val in = uc.getInputStream()
-        downloadFile(url, in, tempFile, targetFile, fileOverwrite)
+        downloadFile(url, in, targetFile, fileOverwrite)
       case "file" =>
         // In the case of a local file, copy the local file to the target directory.
         // Note the difference between uri vs url.
         val sourceFile = if (uri.isAbsolute) new File(uri) else new File(url)
         copyFile(url, sourceFile, targetFile, fileOverwrite)
       case _ =>
-        // Use the Hadoop filesystem library, which supports file://, hdfs://, s3://, and
others
         val fs = getHadoopFileSystem(uri, hadoopConf)
-        val in = fs.open(new Path(uri))
-        downloadFile(url, in, tempFile, targetFile, fileOverwrite)
+        val path = new Path(uri)
+        fetchHcfsFile(path, new File(targetDir, path.getName), fs, conf, hadoopConf, fileOverwrite)
+    }
+  }
+
+  /**
+   * Fetch a file or directory from a Hadoop-compatible filesystem.
+   *
+   * Visible for testing
+   */
+  private[spark] def fetchHcfsFile(
+      path: Path,
+      targetDir: File,
+      fs: FileSystem,
+      conf: SparkConf,
+      hadoopConf: Configuration,
+      fileOverwrite: Boolean): Unit = {
+    if (!targetDir.mkdir()) {
+      throw new IOException(s"Failed to create directory ${targetDir.getPath}")
+    }
+    fs.listStatus(path).foreach { fileStatus =>
+      val innerPath = fileStatus.getPath
+      if (fileStatus.isDir) {
+        fetchHcfsFile(innerPath, new File(targetDir, innerPath.getName), fs, conf, hadoopConf,
+          fileOverwrite)
+      } else {
+        val in = fs.open(innerPath)
+        val targetFile = new File(targetDir, innerPath.getName)
+        downloadFile(innerPath.toString, in, targetFile, fileOverwrite)
+      }
     }
   }
 

http://git-wip-us.apache.org/repos/asf/spark/blob/c22ccc07/core/src/test/scala/org/apache/spark/SparkContextSuite.scala
----------------------------------------------------------------------
diff --git a/core/src/test/scala/org/apache/spark/SparkContextSuite.scala b/core/src/test/scala/org/apache/spark/SparkContextSuite.scala
index 8b3c687..50f347f 100644
--- a/core/src/test/scala/org/apache/spark/SparkContextSuite.scala
+++ b/core/src/test/scala/org/apache/spark/SparkContextSuite.scala
@@ -17,10 +17,17 @@
 
 package org.apache.spark
 
+import java.io.File
+
+import com.google.common.base.Charsets._
+import com.google.common.io.Files
+
 import org.scalatest.FunSuite
 
 import org.apache.hadoop.io.BytesWritable
 
+import org.apache.spark.util.Utils
+
 class SparkContextSuite extends FunSuite with LocalSparkContext {
 
   test("Only one SparkContext may be active at a time") {
@@ -72,4 +79,74 @@ class SparkContextSuite extends FunSuite with LocalSparkContext {
     val byteArray2 = converter.convert(bytesWritable)
     assert(byteArray2.length === 0)
   }
+
+  test("addFile works") {
+    val file = File.createTempFile("someprefix", "somesuffix")
+    val absolutePath = file.getAbsolutePath
+    try {
+      Files.write("somewords", file, UTF_8)
+      val length = file.length()
+      sc = new SparkContext(new SparkConf().setAppName("test").setMaster("local"))
+      sc.addFile(file.getAbsolutePath)
+      sc.parallelize(Array(1), 1).map(x => {
+        val gotten = new File(SparkFiles.get(file.getName))
+        if (!gotten.exists()) {
+          throw new SparkException("file doesn't exist")
+        }
+        if (length != gotten.length()) {
+          throw new SparkException(
+            s"file has different length $length than added file ${gotten.length()}")
+        }
+        if (absolutePath == gotten.getAbsolutePath) {
+          throw new SparkException("file should have been copied")
+        }
+        x
+      }).count()
+    } finally {
+      sc.stop()
+    }
+  }
+
+  test("addFile recursive works") {
+    val pluto = Utils.createTempDir()
+    val neptune = Utils.createTempDir(pluto.getAbsolutePath)
+    val saturn = Utils.createTempDir(neptune.getAbsolutePath)
+    val alien1 = File.createTempFile("alien", "1", neptune)
+    val alien2 = File.createTempFile("alien", "2", saturn)
+
+    try {
+      sc = new SparkContext(new SparkConf().setAppName("test").setMaster("local"))
+      sc.addFile(neptune.getAbsolutePath, true)
+      sc.parallelize(Array(1), 1).map(x => {
+        val sep = File.separator
+        if (!new File(SparkFiles.get(neptune.getName + sep + alien1.getName)).exists()) {
+          throw new SparkException("can't access file under root added directory")
+        }
+        if (!new File(SparkFiles.get(neptune.getName + sep + saturn.getName + sep + alien2.getName))
+            .exists()) {
+          throw new SparkException("can't access file in nested directory")
+        }
+        if (new File(SparkFiles.get(pluto.getName + sep + neptune.getName + sep + alien1.getName))
+            .exists()) {
+          throw new SparkException("file exists that shouldn't")
+        }
+        x
+      }).count()
+    } finally {
+      sc.stop()
+    }
+  }
+
+  test("addFile recursive can't add directories by default") {
+    val dir = Utils.createTempDir()
+
+    try {
+      sc = new SparkContext(new SparkConf().setAppName("test").setMaster("local"))
+      intercept[SparkException] {
+        sc.addFile(dir.getAbsolutePath)
+      }
+    } finally {
+      sc.stop()
+    }
+  }
 }

http://git-wip-us.apache.org/repos/asf/spark/blob/c22ccc07/core/src/test/scala/org/apache/spark/util/UtilsSuite.scala
----------------------------------------------------------------------
diff --git a/core/src/test/scala/org/apache/spark/util/UtilsSuite.scala b/core/src/test/scala/org/apache/spark/util/UtilsSuite.scala
index 4544382..fe2b644 100644
--- a/core/src/test/scala/org/apache/spark/util/UtilsSuite.scala
+++ b/core/src/test/scala/org/apache/spark/util/UtilsSuite.scala
@@ -29,6 +29,9 @@ import com.google.common.base.Charsets.UTF_8
 import com.google.common.io.Files
 import org.scalatest.FunSuite
 
+import org.apache.hadoop.conf.Configuration
+import org.apache.hadoop.fs.Path
+
 import org.apache.spark.SparkConf
 
 class UtilsSuite extends FunSuite with ResetSystemProperties {
@@ -381,4 +384,32 @@ class UtilsSuite extends FunSuite with ResetSystemProperties {
     require(cnt === 2, "prepare should be called twice")
     require(time < 500, "preparation time should not count")
   }
+
+  test("fetch hcfs dir") {
+    val tempDir = Utils.createTempDir()
+    val innerTempDir = Utils.createTempDir(tempDir.getPath)
+    val tempFile = File.createTempFile("someprefix", "somesuffix", innerTempDir)
+    val targetDir = new File("target-dir")
+    Files.write("some text", tempFile, UTF_8)
+
+    try {
+      val path = new Path("file://" + tempDir.getAbsolutePath)
+      val conf = new Configuration()
+      val fs = Utils.getHadoopFileSystem(path.toString, conf)
+      Utils.fetchHcfsFile(path, targetDir, fs, new SparkConf(), conf, false)
+      assert(targetDir.exists())
+      assert(targetDir.isDirectory())
+      val newInnerDir = new File(targetDir, innerTempDir.getName)
+      println("inner temp dir: " + innerTempDir.getName)
+      targetDir.listFiles().map(_.getName).foreach(println)
+      assert(newInnerDir.exists())
+      assert(newInnerDir.isDirectory())
+      val newInnerFile = new File(newInnerDir, tempFile.getName)
+      assert(newInnerFile.exists())
+      assert(newInnerFile.isFile())
+    } finally {
+      Utils.deleteRecursively(tempDir)
+      Utils.deleteRecursively(targetDir)
+    }
+  }
 }


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