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From a...@apache.org
Subject git commit: [SPARK] Fix NPE for ExternalAppendOnlyMap
Date Thu, 03 Jul 2014 17:26:57 GMT
Repository: spark
Updated Branches:
  refs/heads/master 3bbeca648 -> c48053773


[SPARK] Fix NPE for ExternalAppendOnlyMap

It did not handle null keys very gracefully before.

Author: Andrew Or <andrewor14@gmail.com>

Closes #1288 from andrewor14/fix-external and squashes the following commits:

312b8d8 [Andrew Or] Abstract key hash code
ed5adf9 [Andrew Or] Fix NPE for ExternalAppendOnlyMap


Project: http://git-wip-us.apache.org/repos/asf/spark/repo
Commit: http://git-wip-us.apache.org/repos/asf/spark/commit/c4805377
Tree: http://git-wip-us.apache.org/repos/asf/spark/tree/c4805377
Diff: http://git-wip-us.apache.org/repos/asf/spark/diff/c4805377

Branch: refs/heads/master
Commit: c480537739f9329ebfd580f09c69778e6c976366
Parents: 3bbeca6
Author: Andrew Or <andrewor14@gmail.com>
Authored: Thu Jul 3 10:26:50 2014 -0700
Committer: Aaron Davidson <aaron@databricks.com>
Committed: Thu Jul 3 10:26:50 2014 -0700

----------------------------------------------------------------------
 .../util/collection/ExternalAppendOnlyMap.scala | 30 ++++++++++++++------
 .../collection/ExternalAppendOnlyMapSuite.scala | 27 ++++++++++++++++--
 2 files changed, 46 insertions(+), 11 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/spark/blob/c4805377/core/src/main/scala/org/apache/spark/util/collection/ExternalAppendOnlyMap.scala
----------------------------------------------------------------------
diff --git a/core/src/main/scala/org/apache/spark/util/collection/ExternalAppendOnlyMap.scala
b/core/src/main/scala/org/apache/spark/util/collection/ExternalAppendOnlyMap.scala
index 288badd..292d096 100644
--- a/core/src/main/scala/org/apache/spark/util/collection/ExternalAppendOnlyMap.scala
+++ b/core/src/main/scala/org/apache/spark/util/collection/ExternalAppendOnlyMap.scala
@@ -252,7 +252,7 @@ class ExternalAppendOnlyMap[K, V, C](
       if (it.hasNext) {
         var kc = it.next()
         kcPairs += kc
-        val minHash = kc._1.hashCode()
+        val minHash = getKeyHashCode(kc)
         while (it.hasNext && it.head._1.hashCode() == minHash) {
           kc = it.next()
           kcPairs += kc
@@ -294,8 +294,9 @@ class ExternalAppendOnlyMap[K, V, C](
       // Select a key from the StreamBuffer that holds the lowest key hash
       val minBuffer = mergeHeap.dequeue()
       val (minPairs, minHash) = (minBuffer.pairs, minBuffer.minKeyHash)
-      var (minKey, minCombiner) = minPairs.remove(0)
-      assert(minKey.hashCode() == minHash)
+      val minPair = minPairs.remove(0)
+      var (minKey, minCombiner) = minPair
+      assert(getKeyHashCode(minPair) == minHash)
 
       // For all other streams that may have this key (i.e. have the same minimum key hash),
       // merge in the corresponding value (if any) from that stream
@@ -327,15 +328,16 @@ class ExternalAppendOnlyMap[K, V, C](
      * StreamBuffers are ordered by the minimum key hash found across all of their own pairs.
      */
     private class StreamBuffer(
-        val iterator: BufferedIterator[(K, C)], val pairs: ArrayBuffer[(K, C)])
+        val iterator: BufferedIterator[(K, C)],
+        val pairs: ArrayBuffer[(K, C)])
       extends Comparable[StreamBuffer] {
 
       def isEmpty = pairs.length == 0
 
       // Invalid if there are no more pairs in this stream
-      def minKeyHash = {
+      def minKeyHash: Int = {
         assert(pairs.length > 0)
-        pairs.head._1.hashCode()
+        getKeyHashCode(pairs.head)
       }
 
       override def compareTo(other: StreamBuffer): Int = {
@@ -422,10 +424,22 @@ class ExternalAppendOnlyMap[K, V, C](
 }
 
 private[spark] object ExternalAppendOnlyMap {
+
+  /**
+   * Return the key hash code of the given (key, combiner) pair.
+   * If the key is null, return a special hash code.
+   */
+  private def getKeyHashCode[K, C](kc: (K, C)): Int = {
+    if (kc._1 == null) 0 else kc._1.hashCode()
+  }
+
+  /**
+   * A comparator for (key, combiner) pairs based on their key hash codes.
+   */
   private class KCComparator[K, C] extends Comparator[(K, C)] {
     def compare(kc1: (K, C), kc2: (K, C)): Int = {
-      val hash1 = kc1._1.hashCode()
-      val hash2 = kc2._1.hashCode()
+      val hash1 = getKeyHashCode(kc1)
+      val hash2 = getKeyHashCode(kc2)
       if (hash1 < hash2) -1 else if (hash1 == hash2) 0 else 1
     }
   }

http://git-wip-us.apache.org/repos/asf/spark/blob/c4805377/core/src/test/scala/org/apache/spark/util/collection/ExternalAppendOnlyMapSuite.scala
----------------------------------------------------------------------
diff --git a/core/src/test/scala/org/apache/spark/util/collection/ExternalAppendOnlyMapSuite.scala
b/core/src/test/scala/org/apache/spark/util/collection/ExternalAppendOnlyMapSuite.scala
index deb7809..4288229 100644
--- a/core/src/test/scala/org/apache/spark/util/collection/ExternalAppendOnlyMapSuite.scala
+++ b/core/src/test/scala/org/apache/spark/util/collection/ExternalAppendOnlyMapSuite.scala
@@ -334,8 +334,8 @@ class ExternalAppendOnlyMapSuite extends FunSuite with LocalSparkContext
{
     conf.set("spark.shuffle.memoryFraction", "0.001")
     sc = new SparkContext("local-cluster[1,1,512]", "test", conf)
 
-    val map = new ExternalAppendOnlyMap[Int, Int, ArrayBuffer[Int]](createCombiner,
-      mergeValue, mergeCombiners)
+    val map = new ExternalAppendOnlyMap[Int, Int, ArrayBuffer[Int]](
+      createCombiner, mergeValue, mergeCombiners)
 
     (1 to 100000).foreach { i => map.insert(i, i) }
     map.insert(Int.MaxValue, Int.MaxValue)
@@ -346,11 +346,32 @@ class ExternalAppendOnlyMapSuite extends FunSuite with LocalSparkContext
{
       it.next()
     }
   }
+
+  test("spilling with null keys and values") {
+    val conf = new SparkConf(true)
+    conf.set("spark.shuffle.memoryFraction", "0.001")
+    sc = new SparkContext("local-cluster[1,1,512]", "test", conf)
+
+    val map = new ExternalAppendOnlyMap[Int, Int, ArrayBuffer[Int]](
+      createCombiner, mergeValue, mergeCombiners)
+
+    (1 to 100000).foreach { i => map.insert(i, i) }
+    map.insert(null.asInstanceOf[Int], 1)
+    map.insert(1, null.asInstanceOf[Int])
+    map.insert(null.asInstanceOf[Int], null.asInstanceOf[Int])
+
+    val it = map.iterator
+    while (it.hasNext) {
+      // Should not throw NullPointerException
+      it.next()
+    }
+  }
+
 }
 
 /**
  * A dummy class that always returns the same hash code, to easily test hash collisions
  */
-case class FixedHashObject(val v: Int, val h: Int) extends Serializable {
+case class FixedHashObject(v: Int, h: Int) extends Serializable {
   override def hashCode(): Int = h
 }


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