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Subject [GitHub] [singa] chrishkchris commented on issue #623: Some consultations using the conda build in singa/tool/conda/singa
Date Mon, 09 Mar 2020 01:59:06 GMT
chrishkchris commented on issue #623: Some consultations using the conda build in singa/tool/conda/singa
URL: https://github.com/apache/singa/issues/623#issuecomment-596298562
 
 
   Sorry, I tried my anaconda environment is not okay, and then tried the docker environment
in https://github.com/apache/singa/blob/master/tool/conda/docker/cuda10/Dockerfile is still
not ok
   
   The error message is:
   ```
   root@3c17fd6cb72e:~/dcsysh/singa/tool/conda/singa# export CUDA=10.0
   root@3c17fd6cb72e:~/dcsysh/singa/tool/conda/singa# conda-build -c conda-forge . --python
3.6
   No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value
of 1.11
   WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml.  Falling
back to default numpy value of 1.11
   Copying /root/dcsysh/singa to /root/miniconda/conda-bld/singa_1583682553831/work/
   Adding in variants from internal_defaults
   INFO:conda_build.variants:Adding in variants from internal_defaults
   Adding in variants from /root/dcsysh/singa/tool/conda/singa/conda_build_config.yaml
   INFO:conda_build.variants:Adding in variants from /root/dcsysh/singa/tool/conda/singa/conda_build_config.yaml
   Adding in variants from config.variant
   INFO:conda_build.variants:Adding in variants from config.variant
   /root/miniconda/lib/python3.7/site-packages/conda_build/environ.py:427: UserWarning: The
environment variable 'CUDA' is being passed through with value '10.0'.  If you are splitting
build and test phases with --no-test, please ensure that this value is also set similarly
at test time.
     UserWarning
   Attempting to finalize metadata for singa
   INFO:conda_build.metadata:Attempting to finalize metadata for singa
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done
   Adding .* to spec 'libopenblas 0.3.3' to ensure satisfiability.  Please consider putting
{{ var_name }}.* or some relational operator (>/</>=/<=) on this spec in meta.yaml,
or if req is also a build req, using {{ pin_compatible() }} jinja2 function instead.  See
https://conda.io/docs/user-guide/tasks/build-packages/variants.html#pinning-at-the-variant-level
   WARNING:conda_build.utils:Adding .* to spec 'libopenblas 0.3.3' to ensure satisfiability.
 Please consider putting {{ var_name }}.* or some relational operator (>/</>=/<=)
on this spec in meta.yaml, or if req is also a build req, using {{ pin_compatible() }} jinja2
function instead.  See https://conda.io/docs/user-guide/tasks/build-packages/variants.html#pinning-at-the-variant-level
   WARNING conda_build.utils:ensure_valid_spec(1749): Adding .* to spec 'libopenblas 0.3.3'
to ensure satisfiability.  Please consider putting {{ var_name }}.* or some relational operator
(>/</>=/<=) on this spec in meta.yaml, or if req is also a build req, using {{
pin_compatible() }} jinja2 function instead.  See https://conda.io/docs/user-guide/tasks/build-packages/variants.html#pinning-at-the-variant-level
   Adding .* to spec 'libprotobuf 3.6.1' to ensure satisfiability.  Please consider putting
{{ var_name }}.* or some relational operator (>/</>=/<=) on this spec in meta.yaml,
or if req is also a build req, using {{ pin_compatible() }} jinja2 function instead.  See
https://conda.io/docs/user-guide/tasks/build-packages/variants.html#pinning-at-the-variant-level
   WARNING:conda_build.utils:Adding .* to spec 'libprotobuf 3.6.1' to ensure satisfiability.
 Please consider putting {{ var_name }}.* or some relational operator (>/</>=/<=)
on this spec in meta.yaml, or if req is also a build req, using {{ pin_compatible() }} jinja2
function instead.  See https://conda.io/docs/user-guide/tasks/build-packages/variants.html#pinning-at-the-variant-level
   WARNING conda_build.utils:ensure_valid_spec(1749): Adding .* to spec 'libprotobuf 3.6.1'
to ensure satisfiability.  Please consider putting {{ var_name }}.* or some relational operator
(>/</>=/<=) on this spec in meta.yaml, or if req is also a build req, using {{
pin_compatible() }} jinja2 function instead.  See https://conda.io/docs/user-guide/tasks/build-packages/variants.html#pinning-at-the-variant-level
   BUILD START: ['singa-2.1.0.dev-cudnn7.3.1_cuda10.0_py36.tar.bz2']
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done
   
   ## Package Plan ##
   
     environment location: /root/miniconda/conda-bld/singa_1583682553831/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
   
   
   The following NEW packages will be INSTALLED:
   
       _libgcc_mutex:    0.1-conda_forge                        conda-forge
       _openmp_mutex:    4.5-0_gnu                              conda-forge
       blas:             1.1-openblas                           conda-forge
       ca-certificates:  2019.11.28-hecc5488_0                  conda-forge
       certifi:          2019.11.28-py36_0                      conda-forge
       cudatoolkit:      10.0.130-0
       cudnn:            7.3.1-cuda10.0_0
       glog:             0.3.5-hf484d3e_1001                    conda-forge
       intel-openmp:     2018.0.3-0
       ld_impl_linux-64: 2.33.1-h53a641e_8                      conda-forge
       libffi:           3.2.1-he1b5a44_1006                    conda-forge
       libgcc-ng:        9.2.0-h24d8f2e_2                       conda-forge
       libgfortran-ng:   7.3.0-hdf63c60_5                       conda-forge
       libgomp:          9.2.0-h24d8f2e_2                       conda-forge
       libmklml:         2018.0.3-0
       libprotobuf:      3.6.1-hdbcaa40_1001                    conda-forge
       libstdcxx-ng:     9.2.0-hdf63c60_2                       conda-forge
       mkl-dnn:          0.14-h6bb024c_0
       ncurses:          6.1-hf484d3e_1002                      conda-forge
       numpy:            1.16.0-py36_blas_openblash1522bff_1000 conda-forge [blas_openblas]
       openblas:         0.3.3-h9ac9557_1001                    conda-forge
       openssl:          1.1.1d-h516909a_0                      conda-forge
       pcre:             8.44-he1b5a44_0                        conda-forge
       pip:              20.0.2-py_2                            conda-forge
       protobuf:         3.6.1-py36hf484d3e_1001                conda-forge
       python:           3.6.10-h9d8adfe_1009_cpython           conda-forge
       python_abi:       3.6-1_cp36m                            conda-forge
       readline:         8.0-hf8c457e_0                         conda-forge
       setuptools:       45.3.0-py36_0                          conda-forge
       six:              1.14.0-py36_0                          conda-forge
       sqlite:           3.30.1-hcee41ef_0                      conda-forge
       swig:             3.0.12-hf484d3e_1003                   conda-forge
       tk:               8.6.10-hed695b0_0                      conda-forge
       wheel:            0.34.2-py_1                            conda-forge
       xz:               5.2.4-h14c3975_1001                    conda-forge
       zlib:             1.2.11-h516909a_1006                   conda-forge
   
   Preparing transaction: ...working... done
   Verifying transaction: ...working... done
   Executing transaction: ...working... done
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done
   Collecting package metadata (repodata.json): ...working... done
   Solving environment: ...working... done
   
   ## Package Plan ##
   
     environment location: /root/miniconda/conda-bld/singa_1583682553831/_build_env
   
   
   The following NEW packages will be INSTALLED:
   
       _libgcc_mutex:          0.1-conda_forge            conda-forge
       _openmp_mutex:          4.5-0_gnu                  conda-forge
       binutils_impl_linux-64: 2.28.1-had2808c_3
       binutils_linux-64:      5.4.0-had2808c_24
       bzip2:                  1.0.8-h516909a_2           conda-forge
       ca-certificates:        2019.11.28-hecc5488_0      conda-forge
       cmake:                  3.16.4-h28c56e5_0          conda-forge
       expat:                  2.2.9-he1b5a44_2           conda-forge
       gcc_impl_linux-64:      5.4.0-habb00fd_3
       gcc_linux-64:           5.4.0-h98af8de_24
       gxx_impl_linux-64:      5.4.0-hdf63c60_3
       gxx_linux-64:           5.4.0-h98af8de_24
       krb5:                   1.16.4-h2fd8d38_0          conda-forge
       libcurl:                7.68.0-hda55be3_0          conda-forge
       libedit:                3.1.20170329-hf8c457e_1001 conda-forge
       libgcc-ng:              9.2.0-h24d8f2e_2           conda-forge
       libgomp:                9.2.0-h24d8f2e_2           conda-forge
       libssh2:                1.8.2-h22169c7_2           conda-forge
       libstdcxx-ng:           9.2.0-hdf63c60_2           conda-forge
       libuv:                  1.34.0-h516909a_0          conda-forge
       make:                   4.3-h516909a_0             conda-forge
       ncurses:                6.1-hf484d3e_1002          conda-forge
       openssl:                1.1.1d-h516909a_0          conda-forge
       rhash:                  1.3.6-h14c3975_1001        conda-forge
       tk:                     8.6.10-hed695b0_0          conda-forge
       xz:                     5.2.4-h14c3975_1001        conda-forge
       zlib:                   1.2.11-h516909a_1006       conda-forge
   
   Preparing transaction: ...working... done
   Verifying transaction: ...working... done
   Executing transaction: ...working... done
   source tree in: /root/miniconda/conda-bld/singa_1583682553831/work
   export PREFIX=/root/miniconda/conda-bld/singa_1583682553831/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl
   export BUILD_PREFIX=/root/miniconda/conda-bld/singa_1583682553831/_build_env
   export SRC_DIR=/root/miniconda/conda-bld/singa_1583682553831/work
   INFO: activate-binutils_linux-64.sh made the following environmental changes:
   +ADDR2LINE=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-addr2line
   +AR=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ar
   +AS=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-as
   +CXXFILT=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++filt
   +ELFEDIT=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-elfedit
   +GPROF=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gprof
   +HOST=x86_64-conda_cos6-linux-gnu
   +LD=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ld
   +LD_GOLD=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ld.gold
   +NM=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-nm
   +OBJCOPY=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-objcopy
   +OBJDUMP=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-objdump
   +RANLIB=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-ranlib
   +READELF=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-readelf
   +SIZE=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-size
   +STRINGS=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-strings
   +STRIP=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-strip
   INFO: activate-gcc_linux-64.sh made the following environmental changes:
   +CC=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-cc
   +CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -O2
-pipe -I$PREFIX/include -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION}
-fdebug-prefix-map=${PREFIX}=/usr/local/src/conda-prefix
   +CPP=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-cpp
   +CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2
   +DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all
-Og -g -Wall -Wextra -fvar-tracking-assignments -pipe -I$PREFIX/include -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION}
-fdebug-prefix-map=${PREFIX}=/usr/local/src/conda-prefix
   +DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og
   +GCC=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc
   +GCC_AR=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc-ar
   +GCC_NM=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc-nm
   +GCC_RANLIB=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib
   +LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-rpath,$PREFIX/lib
-L$PREFIX/lib
   +_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
   INFO: activate-gxx_linux-64.sh made the following environmental changes:
   +CXX=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-c++
   +CXXFLAGS=-fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona -mtune=haswell
-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -I$PREFIX/include -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION}
-fdebug-prefix-map=${PREFIX}=/usr/local/src/conda-prefix
   +DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -std=c++11 -fmessage-length=0 -march=nocona
-mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -Og -g -Wall -Wextra -fvar-tracking-assignments
-pipe -I$PREFIX/include -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION}
-fdebug-prefix-map=${PREFIX}=/usr/local/src/conda-prefix
   +GXX=$BUILD_PREFIX/bin/x86_64-conda_cos6-linux-gnu-g++
   mkdir: cannot create directory 'build': File exists
   Traceback (most recent call last):
     File "/root/miniconda/bin/conda-build", line 11, in <module>
       sys.exit(main())
     File "/root/miniconda/lib/python3.7/site-packages/conda_build/cli/main_build.py", line
469, in main
       execute(sys.argv[1:])
     File "/root/miniconda/lib/python3.7/site-packages/conda_build/cli/main_build.py", line
460, in execute
       verify=args.verify, variants=args.variants)
     File "/root/miniconda/lib/python3.7/site-packages/conda_build/api.py", line 209, in build
       notest=notest, need_source_download=need_source_download, variants=variants)
     File "/root/miniconda/lib/python3.7/site-packages/conda_build/build.py", line 2344, in
build_tree
       notest=notest,
     File "/root/miniconda/lib/python3.7/site-packages/conda_build/build.py", line 1492, in
build
       cwd=src_dir, stats=build_stats)
     File "/root/miniconda/lib/python3.7/site-packages/conda_build/utils.py", line 398, in
check_call_env
       return _func_defaulting_env_to_os_environ('call', *popenargs, **kwargs)
     File "/root/miniconda/lib/python3.7/site-packages/conda_build/utils.py", line 378, in
_func_defaulting_env_to_os_environ
       raise subprocess.CalledProcessError(proc.returncode, _args)
   subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/root/miniconda/conda-bld/singa_1583682553831/work/conda_build.sh']'
returned non-zero exit status 1.
   ```

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