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From "thao p nguyen (JIRA)" <j...@apache.org>
Subject [jira] [Created] (SINGA-441) can not build CPU version of SINGA on python 3.6
Date Thu, 11 Apr 2019 02:21:00 GMT
thao p nguyen created SINGA-441:
-----------------------------------

             Summary: can not build CPU version of SINGA on python 3.6
                 Key: SINGA-441
                 URL: https://issues.apache.org/jira/browse/SINGA-441
             Project: Singa
          Issue Type: Bug
          Components: Documentation
         Environment: - ubuntu 18
- python 3.6.7
            Reporter: thao p nguyen


After installed miniconda and conda-build successfully, can not install Singa on both python3.6
& 3.7. Below are my command lines and messages:

thao@thao-OptiPlex-5060:~$ conda list
WARNING: The conda.compat module is deprecated and will be removed in a future release.
# packages in environment at /home/thao/miniconda3:
#
# Name Version Build Channel
asn1crypto 0.24.0 py37_0 
beautifulsoup4 4.7.1 py37_1 
bzip2 1.0.6 h14c3975_5 
ca-certificates 2019.1.23 0 
certifi 2019.3.9 py37_0 
cffi 1.11.5 py37he75722e_1 
chardet 3.0.4 py37_1 
conda 4.6.11 py37_0 
conda-build 3.17.8 py37_0 
conda-env 2.6.0 1 
cryptography 2.4.2 py37h1ba5d50_0 
filelock 3.0.10 py37_0 
glob2 0.6 py37_1 
icu 58.2 h9c2bf20_1 
idna 2.8 py37_0 
jinja2 2.10 py37_0 
libarchive 3.3.3 h5d8350f_5 
libedit 3.1.20170329 h6b74fdf_2 
libffi 3.2.1 hd88cf55_4 
libgcc-ng 8.2.0 hdf63c60_1 
liblief 0.9.0 h7725739_2 
libstdcxx-ng 8.2.0 hdf63c60_1 
libxml2 2.9.9 he19cac6_0 
lz4-c 1.8.1.2 h14c3975_0 
lzo 2.10 h49e0be7_2 
markupsafe 1.1.1 py37h7b6447c_0 
ncurses 6.1 he6710b0_1 
openssl 1.1.1b h7b6447c_1 
patchelf 0.9 he6710b0_3 
pip 18.1 py37_0 
pkginfo 1.5.0.1 py37_0 
psutil 5.6.1 py37h7b6447c_0 
py-lief 0.9.0 py37h7725739_2 
pycosat 0.6.3 py37h14c3975_0 
pycparser 2.19 py37_0 
pyopenssl 18.0.0 py37_0 
pysocks 1.6.8 py37_0 
python 3.7.1 h0371630_7 
python-libarchive-c 2.8 py37_6 
pytz 2018.9 py37_0 
pyyaml 5.1 py37h7b6447c_0 
readline 7.0 h7b6447c_5 
requests 2.21.0 py37_0 
ruamel_yaml 0.15.46 py37h14c3975_0 
setuptools 40.6.3 py37_0 
six 1.12.0 py37_0 
soupsieve 1.8 py37_0 
sqlite 3.26.0 h7b6447c_0 
tk 8.6.8 hbc83047_0 
tqdm 4.31.1 py37_1 
urllib3 1.24.1 py37_0 
wheel 0.32.3 py37_0 
xz 5.2.4 h14c3975_4 
yaml 0.1.7 had09818_2 
zlib 1.2.11 h7b6447c_3 
zstd 1.3.7 h0b5b093_0

thao@thao-OptiPlex-5060:~$ conda install conda-build
WARNING: The conda.compat module is deprecated and will be removed in a future release.
Collecting package metadata: done
Solving environment: done

# All requested packages already installed.


thao@thao-OptiPlex-5060:~$ cd Documents/Singa/incubator-singa/
thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ export BUILD_STR=cpu
thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ conda build tool/conda/singa/ --python
3.7
WARNING: The conda.compat module is deprecated and will be removed in a future release.
No numpy version specified in conda_build_config.yaml. Falling back to default numpy value
of 1.11
WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling
back to default numpy value of 1.11
Cloning into '/home/thao/miniconda3/conda-bld/singa_1554907178635/work'...
done.
checkout: 'HEAD'
Your branch is up to date with 'origin/_conda_cache_origin_head'.
Submodule 'rafiki' (https://github.com/nginyc/rafiki.git) registered for path 'rafiki'
Cloning into '/home/thao/miniconda3/conda-bld/singa_1554907178635/work/rafiki'...
Submodule path 'rafiki': checked out 'b027c588f27ed4e801e8e300785b0eca230b5167'
==> git log -n1 <==

commit 5f14f3dbc005a64fdbc508bff63db92e6d3e05b6
Merge: 8072ecdb 73a3b471
Author: Wang Wei <wangwei.cs@gmail.com>
Date: Sun Apr 7 13:11:35 2019 +0800

Merge branch 'master' of https://gitbox.apache.org/repos/asf/incubator-singa

==> git describe --tags --dirty <==

2.0.0rc1

==> git status <==

On branch _conda_cache_origin_head
Your branch is up to date with 'origin/_conda_cache_origin_head'.

nothing to commit, working tree clean

Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Adding in variants from /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
INFO:conda_build.variants:Adding in variants from /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
Adding in variants from config.variant
INFO:conda_build.variants:Adding in variants from config.variant
/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py:414: UserWarning:
The environment variable 'CUDA' is undefined.
 UserWarning
Attempting to finalize metadata for singa
INFO:conda_build.metadata:Attempting to finalize metadata for singa
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
BUILD START: ['singa-2.0.0rc1-cpu.tar.bz2']
Collecting package metadata: ...working... done
Solving environment: ...working... done

## Package Plan ##

environment location: /home/thao/miniconda3/conda-bld/singa_1554907178635/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh


The following NEW packages will be INSTALLED:

blas: 1.0-openblas 
 ca-certificates: 2019.1.23-0 
 certifi: 2019.3.9-py36_0 
 gflags: 2.2.2-he6710b0_0 
 glog: 0.3.5-hf484d3e_1 
 intel-openmp: 2018.0.3-0 
 libedit: 3.1.20181209-hc058e9b_0
 libffi: 3.2.1-hd88cf55_4 
 libgcc-ng: 8.2.0-hdf63c60_1 
 libgfortran-ng: 7.3.0-hdf63c60_0 
 libmklml: 2018.0.3-0 
 libopenblas: 0.3.3-h5a2b251_3 
 libprotobuf: 3.4.0-0 
 libstdcxx-ng: 8.2.0-hdf63c60_1 
 mkl-dnn: 0.14-h6bb024c_0 
 ncurses: 6.1-he6710b0_1 
 nomkl: 3.0-0 
 numpy: 1.16.0-py36h99e49ec_1 
 numpy-base: 1.16.0-py36h2f8d375_1 
 openblas: 0.3.3-3 
 openblas-devel: 0.3.3-3 
 openssl: 1.1.1b-h7b6447c_1 
 pcre: 8.43-he6710b0_0 
 pip: 19.0.3-py36_0 
 protobuf: 3.4.0-py36_0 
 python: 3.6.8-h0371630_0 
 readline: 7.0-h7b6447c_5 
 setuptools: 40.8.0-py36_0 
 six: 1.12.0-py36_0 
 sqlite: 3.27.2-h7b6447c_0 
 swig: 3.0.12-h38cdd7d_3 
 tk: 8.6.8-hbc83047_0 
 wheel: 0.33.1-py36_0 
 xz: 5.2.4-h14c3975_4 
 zlib: 1.2.11-h7b6447c_3

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: symlink_conda() is deprecated.
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... failed

Leaving build/test directories:
 Work:
 /home/thao/miniconda3/conda-bld/work 
 Test:
 /home/thao/miniconda3/conda-bld/test_tmp 
Leaving build/test environments:
 Test:
source activate /home/thao/miniconda3/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla

 Build:
source activate /home/thao/miniconda3/conda-bld/_build_env


Traceback (most recent call last):
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py", line 753,
in get_install_actions
 actions = install_actions(prefix, index, specs, force=True)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in
decorated
 return f(*args, **kwds)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/plan.py", line 473, in install_actions
 txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 107, in
solve_for_transaction
 force_remove, force_reinstall)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 145, in
solve_for_diff
 force_remove)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 242, in
solve_final_state
 ssc = self._run_sat(ssc)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in
decorated
 return f(*args, **kwds)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 475, in
_run_sat
 conflicting_specs = ssc.r.get_conflicting_specs(tuple(final_environment_specs))
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 852, in get_conflicting_specs
 reduced_index = self.get_reduced_index(specs)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in
decorated
 return f(*args, **kwds)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 356, in get_reduced_index
 specs, features = self.verify_specs(specs)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 244, in verify_specs
 raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound: 
 - onnx[version='>=1.3.0']

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
 File "/home/thao/miniconda3/bin/conda-build", line 11, in <module>
 sys.exit(main())
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line
456, in main
 execute(sys.argv[1:])
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line
447, in execute
 verify=args.verify, variants=args.variants)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/api.py", line 208, in
build
 notest=notest, need_source_download=need_source_download, variants=variants)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 2314,
in build_tree
 notest=notest,
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1397,
in build
 create_build_envs(m, notest)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1281,
in create_build_envs
 raise e
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1271,
in create_build_envs
 channel_urls=tuple(m.config.channel_urls))
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py", line 755,
in get_install_actions
 raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform
linux-64: \{"onnx[version='>=1.3.0']"}

thao@thao-OptiPlex-5060:~/Documents/Singa/incubator-singa$ conda build tool/conda/singa/ --python
3.6
WARNING: The conda.compat module is deprecated and will be removed in a future release.
No numpy version specified in conda_build_config.yaml. Falling back to default numpy value
of 1.11
WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling
back to default numpy value of 1.11
Cloning into '/home/thao/miniconda3/conda-bld/singa_1554947642062/work'...
done.
checkout: 'HEAD'
Your branch is up to date with 'origin/_conda_cache_origin_head'.
Submodule 'rafiki' (https://github.com/nginyc/rafiki.git) registered for path 'rafiki'
Cloning into '/home/thao/miniconda3/conda-bld/singa_1554947642062/work/rafiki'...
Submodule path 'rafiki': checked out 'b027c588f27ed4e801e8e300785b0eca230b5167'
==> git log -n1 <==
commit 5f14f3dbc005a64fdbc508bff63db92e6d3e05b6
Merge: 8072ecdb 73a3b471
Author: Wang Wei <wangwei.cs@gmail.com>
Date: Sun Apr 7 13:11:35 2019 +0800
 Merge branch 'master' of https://gitbox.apache.org/repos/asf/incubator-singa
==> git describe --tags --dirty <==
2.0.0rc1
==> git status <==
On branch _conda_cache_origin_head
Your branch is up to date with 'origin/_conda_cache_origin_head'.
nothing to commit, working tree clean
Adding in variants from internal_defaults
INFO:conda_build.variants:Adding in variants from internal_defaults
Adding in variants from /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
INFO:conda_build.variants:Adding in variants from /home/thao/Documents/Singa/incubator-singa/tool/conda/singa/conda_build_config.yaml
Adding in variants from config.variant
INFO:conda_build.variants:Adding in variants from config.variant
/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py:414: UserWarning:
The environment variable 'CUDA' is undefined.
 UserWarning
Attempting to finalize metadata for singa
INFO:conda_build.metadata:Attempting to finalize metadata for singa
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... done
BUILD START: ['singa-2.0.0rc1-cpu.tar.bz2']
Collecting package metadata: ...working... done
Solving environment: ...working... done
## Package Plan ##
 environment location: /home/thao/miniconda3/conda-bld/singa_1554947642062/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh
The following NEW packages will be INSTALLED:
 blas: 1.0-openblas 
 ca-certificates: 2019.1.23-0 
 certifi: 2019.3.9-py36_0 
 gflags: 2.2.2-he6710b0_0 
 glog: 0.3.5-hf484d3e_1 
 intel-openmp: 2018.0.3-0 
 libedit: 3.1.20181209-hc058e9b_0
 libffi: 3.2.1-hd88cf55_4 
 libgcc-ng: 8.2.0-hdf63c60_1 
 libgfortran-ng: 7.3.0-hdf63c60_0 
 libmklml: 2018.0.3-0 
 libopenblas: 0.3.3-h5a2b251_3 
 libprotobuf: 3.4.0-0 
 libstdcxx-ng: 8.2.0-hdf63c60_1 
 mkl-dnn: 0.14-h6bb024c_0 
 ncurses: 6.1-he6710b0_1 
 nomkl: 3.0-0 
 numpy: 1.16.0-py36h99e49ec_1 
 numpy-base: 1.16.0-py36h2f8d375_1 
 openblas: 0.3.3-3 
 openblas-devel: 0.3.3-3 
 openssl: 1.1.1b-h7b6447c_1 
 pcre: 8.43-he6710b0_0 
 pip: 19.0.3-py36_0 
 protobuf: 3.4.0-py36_0 
 python: 3.6.8-h0371630_0 
 readline: 7.0-h7b6447c_5 
 setuptools: 40.8.0-py36_0 
 six: 1.12.0-py36_0 
 sqlite: 3.27.2-h7b6447c_0 
 swig: 3.0.12-h38cdd7d_3 
 tk: 8.6.8-hbc83047_0 
 wheel: 0.33.1-py36_0 
 xz: 5.2.4-h14c3975_4 
 zlib: 1.2.11-h7b6447c_3 
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: symlink_conda() is deprecated.
Collecting package metadata: ...working... done
Solving environment: ...working... done
Collecting package metadata: ...working... done
Solving environment: ...working... failed
Leaving build/test directories:
 Work:
 /home/thao/miniconda3/conda-bld/work 
 Test:
 /home/thao/miniconda3/conda-bld/test_tmp 
Leaving build/test environments:
 Test:
source activate /home/thao/miniconda3/conda-bld/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla

 Build:
source activate /home/thao/miniconda3/conda-bld/_build_env 
Traceback (most recent call last):
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py", line 753,
in get_install_actions
 actions = install_actions(prefix, index, specs, force=True)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in
decorated
 return f(*args, **kwds)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/plan.py", line 473, in install_actions
 txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 107, in
solve_for_transaction
 force_remove, force_reinstall)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 145, in
solve_for_diff
 force_remove)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 242, in
solve_final_state
 ssc = self._run_sat(ssc)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in
decorated
 return f(*args, **kwds)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/core/solve.py", line 475, in
_run_sat
 conflicting_specs = ssc.r.get_conflicting_specs(tuple(final_environment_specs))
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 852, in get_conflicting_specs
 reduced_index = self.get_reduced_index(specs)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/common/io.py", line 88, in
decorated
 return f(*args, **kwds)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 356, in get_reduced_index
 specs, features = self.verify_specs(specs)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda/resolve.py", line 244, in verify_specs
 raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound: 
 - onnx[version='>=1.3.0']
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
 File "/home/thao/miniconda3/bin/conda-build", line 11, in <module>
 sys.exit(main())
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line
456, in main
 execute(sys.argv[1:])
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/cli/main_build.py", line
447, in execute
 verify=args.verify, variants=args.variants)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/api.py", line 208, in
build
 notest=notest, need_source_download=need_source_download, variants=variants)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 2314,
in build_tree
 notest=notest,
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1397,
in build
 create_build_envs(m, notest)
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1281,
in create_build_envs
 raise e
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/build.py", line 1271,
in create_build_envs
 channel_urls=tuple(m.config.channel_urls))
 File "/home/thao/miniconda3/lib/python3.7/site-packages/conda_build/environ.py", line 755,
in get_install_actions
 raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform
linux-64: \{"onnx[version='>=1.3.0']"}



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