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Subject [GitHub] eric-haibin-lin commented on a change in pull request #8331: [sparse] slice for csr on two dimensions, cpu implementation
Date Thu, 01 Jan 1970 00:00:00 GMT
eric-haibin-lin commented on a change in pull request #8331: [sparse] slice for csr on two
dimensions, cpu implementation
URL: https://github.com/apache/incubator-mxnet/pull/8331#discussion_r149505376
 
 

 ##########
 File path: src/operator/tensor/matrix_op-inl.h
 ##########
 @@ -601,18 +595,151 @@ void SliceCsrImpl(const SliceParam &param, const OpContext&
ctx,
   });
 }
 
+/*!
+ * \brief slice a CSRNDArray for two dimensions
+ */
+struct SliceDimTwoCsrAssign {
+  /*!
+   * \brief This function slices a CSRNDArray on axis one between begin_col and end_col
+   * \param i           loop index
+   * \param out_idx     output csr ndarray column indices    
+   * \param out_data    output csr ndarray data
+   * \param out_indptr  output csr ndarray row index pointer
+   * \param in_idx      input csr ndarray column indices
+   * \param in_data     input csr ndarray data
+   * \param in_indptr   input csr ndarray row index pointer
+   * \param begin_col   begin column indice
+   * \param end_col     end column indice
+   */
+  template<typename IType, typename RType, typename DType>
+  MSHADOW_XINLINE static void Map(int i,
+                                  IType* out_idx, DType* out_data,
+                                  const RType* out_indptr,
+                                  const IType* in_idx, const DType* in_data,
+                                  const RType* in_indptr,
+                                  const int begin_col, const int end_col) {
+    RType ind = out_indptr[i];
+    for (RType j = in_indptr[i]; j < in_indptr[i+1]; j++) {
+      // indices of CSRNDArray are in ascending order per row
+      if (in_idx[j] >= end_col) {
+        break;
+      } else if (in_idx[j] >= begin_col) {
+        out_idx[ind] = in_idx[j] - begin_col;
+        out_data[ind] = in_data[j];
+        ind++;
+      }
+    }
+  }
+};
+
+/*
+ * Slice a CSR NDArray for two dimensions
+ * Only implemented for CPU
+ */
+template<typename xpu>
+void SliceDimTwoCsrImpl(const TShape &begin, const TShape &end, const OpContext&
ctx,
+                        const NDArray &in, const NDArray &out) {
+  using namespace mshadow;
+  using namespace mxnet_op;
+  using namespace csr;
+  CHECK((std::is_same<xpu, cpu>::value)) << "SliceDimTwoCsrImpl is only implemented
for CPU";
+  nnvm::dim_t begin_row = begin[0], end_row = end[0];
+  nnvm::dim_t begin_col = begin[1], end_col = end[1];
+  nnvm::dim_t indptr_len = end_row - begin_row + 1;
+  out.CheckAndAllocAuxData(kIndPtr, Shape1(indptr_len));
+  // assume idx indptr share the same type
+  MSHADOW_IDX_TYPE_SWITCH(in.aux_type(kIndPtr), RType, {
+    MSHADOW_IDX_TYPE_SWITCH(in.aux_type(kIdx), IType, {
+      MSHADOW_TYPE_SWITCH(in.dtype(), DType, {
+        RType *in_indptr = in.aux_data(kIndPtr).dptr<RType>();
+        IType *in_idx = in.aux_data(kIdx).dptr<IType>();
+        DType *in_data = in.data().dptr<DType>();
+        // retrieve nnz (CPU implementation)
+        RType *out_indptr = out.aux_data(kIndPtr).dptr<RType>();
+        int nnz = 0;
+        out_indptr[0] = 0;
+        // loop through indptr array and corresponding indices to count for nnz
+        for (nnvm::dim_t i = 0; i < indptr_len - 1; i++) {
+          out_indptr[i+1] = out_indptr[i];
+          for (RType j = in_indptr[i + begin_row];
+               j < in_indptr[i + begin_row + 1]; j++) {
+            // indices of CSRNDArray are in ascending order per row
+            if (in_idx[j] >= end_col) {
+              break;
+            } else if (in_idx[j] >= begin_col) {
+              out_indptr[i+1]++;
+              nnz++;
+            }
+          }
+        }
+        // returns zeros in csr format if nnz = 0
+        if (nnz == 0) {
+          out.set_aux_shape(kIdx, Shape1(0));
 
 Review comment:
   Same comment here

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