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From "Chun-Hung Hsiao (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (MESOS-9151) Container stuck at ISOLATING due to FD leaking.
Date Wed, 15 Aug 2018 22:21:00 GMT

    [ https://issues.apache.org/jira/browse/MESOS-9151?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16581691#comment-16581691
] 

Chun-Hung Hsiao commented on MESOS-9151:
----------------------------------------

[~alexr] Do you think we should downgrade  MESOS-8128 as well? cc [~jpeach@apache.org] [~jieyu]

> Container stuck at ISOLATING due to FD leaking.
> -----------------------------------------------
>
>                 Key: MESOS-9151
>                 URL: https://issues.apache.org/jira/browse/MESOS-9151
>             Project: Mesos
>          Issue Type: Bug
>          Components: containerization
>            Reporter: Gilbert Song
>            Assignee: Gilbert Song
>            Priority: Critical
>              Labels: containerizer, mesosphere
>
> When containers are launching on a single agent at scale, one container stuck at ISOLATING
could occasionally happen. And this container becomes un-destroyable due to containerizer
destroy always wait for isolate() finish to continue.
> We add more logging to debug this issue:
> {noformat}
> Aug 10 17:23:28 ip-10-0-1-129.us-west-2.compute.internal mesos-agent[2974]: I0810 17:23:28.050068
 2995 collect.hpp:271] $$$$: AwaitProcess waited invoked for ProcessBase ID: __await__(26651);
futures size: 3; future: Ready; future index: 2; ready count: 1
> Aug 10 17:23:28 ip-10-0-1-129.us-west-2.compute.internal mesos-agent[2974]: I0810 17:23:28.414436
 2998 collect.hpp:271] $$$$: AwaitProcess waited invoked for ProcessBase ID: __await__(26651);
futures size: 3; future: Ready; future index: 0; ready count: 2
> {noformat} 
> which shows that the await() in CNI::attach() stuck at the second future (io::read()
for stdout).
> By looking at the df of this stdout:
> {noformat}
> Aug 10 17:23:27 ip-10-0-1-129.us-west-2.compute.internal mesos-agent[2974]: I0810 17:23:27.657501
 2995 cni.cpp:1287] !!!!: Start to await for plugin '/opt/mesosphere/active/mesos/libexec/mesos/mesos-cni-port-mapper'
to finish for container 1c8abf4c-f71a-4704-9a73-1ab0dd709c62 with pid '16644'; stdout fd:
1781; stderr fd: 1800
> {noformat}
> We found
> {noformat}
> core@ip-10-0-1-129 ~ $ ps aux | grep mesos-agent
> core      1674  0.0  0.0   6704   864 pts/0    S+   20:00   0:00 grep --colour=auto mesos-agent
> root      2974 16.4  2.5 1211096 414048 ?      Ssl  17:02  29:11 /opt/mesosphere/packages/mesos--61265af3be37861f26b657c1f9800293b86a0374/bin/mesos-agent
> core@ip-10-0-1-129 ~ $ sudo ls -al /proc/2974/fd/ | grep 1781
> l-wx------. 1 root root 64 Aug 10 19:38 1781 -> /var/lib/mesos/slave/meta/slaves/d3089315-8e34-40b4-b1f7-0ac6a624d7db-S0/frameworks/d3089315-8e34-40b4-b1f7-0ac6a624d7db-0000/executors/test2.d820326d-9cc1-11e8-9809-ee15da5c8980/runs/38e9270d-ebda-4758-ad96-40c5b84bffdc/tasks/test2.d820326d-9cc1-11e8-9809-ee15da5c8980/task.updates
> {noformat}
> {noformat}
> core@ip-10-0-1-129 ~ $ ps aux | grep 27981
> core      2201  0.0  0.0   6704   884 pts/0    S+   20:06   0:00 grep --colour=auto 27981
> root     27981  0.0  0.0   1516     4 ?        Ss   17:25   0:00 sleep 10000
> core@ip-10-0-1-129 ~ $ cat /proc/s^C       
> core@ip-10-0-1-129 ~ $ sudo -s
> ip-10-0-1-129 core # ls -al /proc/27981/fd | grep 275230
> lr-x------. 1 root root 64 Aug 10 20:05 1781 -> pipe:[275230]
> l-wx------. 1 root root 64 Aug 10 20:05 1787 -> pipe:[275230]
> {noformat}
> {noformat}
> core@ip-10-0-1-129 ~ $ sudo ls -al /proc/2974/fd/ | grep pipe
> lr-x------. 1 root root 64 Aug 10 17:02 11 -> pipe:[49380]
> l-wx------. 1 root root 64 Aug 10 17:02 14 -> pipe:[49380]
> lr-x------. 1 root root 64 Aug 10 17:02 17 -> pipe:[48909]
> lr-x------. 1 root root 64 Aug 10 19:38 1708 -> pipe:[275089]
> l-wx------. 1 root root 64 Aug 10 19:38 1755 -> pipe:[275089]
> lr-x------. 1 root root 64 Aug 10 19:38 1787 -> pipe:[275230]
> l-wx------. 1 root root 64 Aug 10 17:02 19 -> pipe:[48909]
> {noformat}
> pipe 275230 is held by the agent process and the sleep process at the same time!
> The reason why the leak is possible is because we don't use `pipe2` to create a pipe
with `O_CLOEXEC` in subprocess:
> https://github.com/apache/mesos/blob/1.5.x/3rdparty/libprocess/src/subprocess_posix.cpp#L61
> Although we do set cloexec on those fds later:
> https://github.com/apache/mesos/blob/1.5.x/3rdparty/libprocess/src/subprocess.cpp#L366-L373
> There is a race where a fork happens after `pipe()` call, but before cloexec is called
later. This is more likely on a busy system (this explains why it's not hard to repo the issue
when launching a lot of containers on a single box).



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