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Date: Fri, 11 Dec 2015 07:24:56 -0500
Message-ID: 
 <CALUFAGDAmuLyYmRVfemgAHRMqitppgP7k4d21Zx_EFhWLCqNwA@mail.gmail.com>
Subject: Re: ManifoldCF transformation connector for Apache Stanbol
From: Karl Wright <daddywri@gmail.com>
To: dev <dev@manifoldcf.apache.org>
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Thanks!!  Rafa and I will have a look at this over the weekend.

Karl


On Fri, Dec 11, 2015 at 7:05 AM, Dileepa Jayakody <djayakody@zaizi.com>
wrote:

> Hi All,
>
> As per our discussion I have modified the Stanbol Connector so that it ad=
ds
> all extracted entity URIs and entity attributes to the repository documen=
t
> as fields.
>
> On a separate branch I have committed this code to our github project
> sensefy-connectors.
> You can find the source code here:
>
> https://github.com/zaizi/sensefy-connectors/tree/feature/SENSEFY-1453-mod=
ify-stanbol-connector/transformation/mcf-stanbol-connector
> Let me know your feedback.
>
> I will write a blog post on how to add it in a connection and get
> ehancement results and share it with you.
>
> Thanks,
> Dileepa
>
>
>
> On Mon, Dec 7, 2015 at 6:29 PM, Karl Wright <daddywri@gmail.com> wrote:
>
> > Hi Dileepa,
> >
> > You cannot create sub-documents in a transformation connector.  And
> adding
> > that capability to the framework is not possible; we would be missing k=
ey
> > bookkeeping logic if that was allowed.
> >
> > Karl
> >
> >
> > On Mon, Dec 7, 2015 at 6:59 AM, Dileepa Jayakody <djayakody@zaizi.com>
> > wrote:
> >
> > > Hi Karl,
> > >
> > > Thanks a lot for the pointer.
> > >
> > > Stanbol doesn't update an existing document, it generates a new
> response
> > > with requested enhancement details for the content enhansment request=
.
> > > For example for a request like : "Paris is a city in France" followin=
g
> > RDF
> > > response [1] is given by Stanbol.
> > >
> > > In the Stanbol connector, enhancement artifacts such as TextAnnotatio=
ns
> > > and EntityAnnotations are extracted from the RDF response, to generat=
e
> > the
> > > entity abstractions and add them to the mcf repository document.
> > Currently
> > > in the Stanbol connector we have added these entity abstractions as
> JSON
> > > strings to a multi-valued 'entities' field in the repository document
> and
> > > we parse that JSON in the SolrWrapper output connector to index in
> > separate
> > > Solr cores (primary documents, linked entities and entity types with
> > their
> > > attributes).
> > >
> > > Can we can have a primary repository document and create sub document=
s
> > for
> > > the extracted entities? Is it possible to generate sub documents for =
a
> > > repo-document in a transformation connector?
> > >
> > > Thanks.
> > > Dileepa
> > >
> > > [1] Sample Stanbol response
> > >
> > > {
> > >   "@context": {
> > >     "dbp-ont": "http://dbpedia.org/ontology/",
> > >     "dc": "http://purl.org/dc/terms/",
> > >     "dc:created": {
> > >       "@type": "xsd:dateTime"
> > >     },
> > >     "enhancer": "http://fise.iks-project.eu/ontology/",
> > >     "enhancer:confidence": {
> > >       "@type": "xsd:double"
> > >     },
> > >     "enhancer:end": {
> > >       "@type": "xsd:int"
> > >     },
> > >     "enhancer:entity-reference": {
> > >       "@type": "@id"
> > >     },
> > >     "enhancer:entity-type": {
> > >       "@type": "@id"
> > >     },
> > >     "enhancer:extracted-from": {
> > >       "@type": "@id"
> > >     },
> > >     "enhancer:start": {
> > >       "@type": "xsd:int"
> > >     },
> > >     "entityhub": "
> > http://stanbol.apache.org/ontology/entityhub/entityhub#
> > > ",
> > >     "foaf": "http://xmlns.com/foaf/0.1/",
> > >     "foaf:depiction": {
> > >       "@type": "@id"
> > >     },
> > >     "owl": "http://www.w3.org/2002/07/owl#",
> > >     "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
> > >     "schema": "http://schema.org/",
> > >     "xsd": "http://www.w3.org/2001/XMLSchema#"
> > >   },
> > >   "@graph": [
> > >     {
> > >       "@id": "http://dbpedia.org/resource/France",
> > >       "@type": [
> > >         "dbp-ont:Country",
> > >         "dbp-ont:Place",
> > >         "dbp-ont:PopulatedPlace",
> > >         "http://www.opengis.net/gml/_Feature",
> > >         "owl:Thing",
> > >         "schema:Country",
> > >         "schema:Place"
> > >       ],
> > >       "foaf:depiction": [
> > >         "
> > > http://upload.wikimedia.org/wikipedia/commons/c/c3/Flag_of_France.svg
> ",
> > >         "
> > >
> >
> http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Flag_of_France.s=
vg/200px-Flag_of_France.svg.png
> > > "
> > >       ],
> > >       "rdfs:comment": {
> > >         "@language": "en",
> > >         "@value": "France, officially the French Republic, is a
> > > unitary semi-presidential republic in Western Europe with several
> > > overseas territories and islands located on other continents and in
> > > the Indian, Pacific, and Atlantic oceans. Metropolitan France extends
> > > from the Mediterranean Sea to the English Channel and the North Sea,
> > > and from the Rhine to the Atlantic Ocean. It is often referred to as
> > > l=E2=80=99Hexagone because of the geometric shape of its territory."
> > >       },
> > >       "rdfs:label": [
> > >         {
> > >           "@language": "en",
> > >           "@value": "France"
> > >         },
> > >         {
> > >           "@language": "fr",
> > >           "@value": "France"
> > >         },
> > >       ]
> > >     },
> > >
> > >     {
> > >       "@id": "http://dbpedia.org/resource/Paris",
> > >       "@type": [
> > >         "dbp-ont:Place",
> > >         "dbp-ont:PopulatedPlace",
> > >         "dbp-ont:Settlement",
> > >         "http://www.opengis.net/gml/_Feature",
> > >         "owl:Thing",
> > >         "schema:Place"
> > >       ],
> > >       "foaf:depiction": [
> > >         "
> > >
> >
> http://upload.wikimedia.org/wikipedia/commons/6/6e/Paris_-_Eiffelturm_und=
_Marsfeld2.jpg
> > > ",
> > >         "
> > >
> >
> http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Paris_-_Eiffeltu=
rm_und_Marsfeld2.jpg/200px-Paris_-_Eiffelturm_und_Marsfeld2.jpg
> > > "
> > >       ],
> > >       "geo:lat": 48.8567,
> > >       "geo:long": 2.3508,
> > >       "rdfs:comment": {
> > >         "@language": "en",
> > >         "@value": "Paris is the capital and largest city of France. I=
t
> > > is situated on the river Seine, in northern France, at the heart of
> > > the =C3=8Ele-de-France region (or Paris Region, French: R=C3=A9gion p=
arisienne).
> > > As of January 2008 the city of Paris, within its administrative limit=
s
> > > largely unchanged since 1860, has an estimated population of 2,211,29=
7
> > > and a metropolitan population of 12,089,098, and is one of the most
> > > populated metropolitan areas in Europe."
> > >       },
> > >       "rdfs:label": [
> > >
> > >         {
> > >           "@language": "en",
> > >           "@value": "Paris"
> > >         },
> > >         {
> > >           "@language": "fr",
> > >           "@value": "Paris"
> > >         },
> > >       ]
> > >     },
> > >    }
> > >     {
> > >       "@id": "urn:enhancement-8db13707-1ecd-b4df-90ad-52447c8f2c84",
> > >       "@type": [
> > >         "enhancer:Enhancement",
> > >         "enhancer:TextAnnotation"
> > >       ],
> > >       "dc:created": "2015-12-07T11:22:07.740Z",
> > >       "dc:creator":
> > >
> > >
> >
> "org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEn=
hancementEngine",
> > >       "dc:type": "dbp-ont:Place",
> > >       "enhancer:confidence": 0.6017613,
> > >       "enhancer:end": 5,
> > >       "enhancer:extracted-from":
> > > "urn:content-item-sha1-c8ae372ed26679df14da13050dd432fd32c527e3",
> > >       "enhancer:selected-text": {
> > >         "@language": "en",
> > >         "@value": "Paris"
> > >       },
> > >       "enhancer:selection-context": {
> > >         "@language": "en",
> > >         "@value": "Paris is in France"
> > >       },
> > >       "enhancer:start": 0
> > >     },
> > >     {
> > >       "@id": "urn:enhancement-b2855552-0e46-62f5-cd33-9f84ab32e547",
> > >       "@type": [
> > >         "enhancer:Enhancement",
> > >         "enhancer:EntityAnnotation"
> > >       ],
> > >       "dc:created": "2015-12-07T11:22:07.748Z",
> > >       "dc:creator":
> > >
> > >
> >
> "org.apache.stanbol.enhancer.engines.entitytagging.impl.NamedEntityTaggin=
gEngine",
> > >       "dc:relation":
> > > "urn:enhancement-e9c9c187-2d69-2c1f-6552-e76111430d4a",
> > >       "enhancer:confidence": 1.0,
> > >       "enhancer:entity-label": {
> > >         "@language": "en",
> > >         "@value": "France"
> > >       },
> > >       "enhancer:entity-reference": "http://dbpedia.org/resource/Franc=
e
> ",
> > >       "enhancer:entity-type": [
> > >         "dbp-ont:Country",
> > >         "dbp-ont:Place",
> > >         "dbp-ont:PopulatedPlace",
> > >         "schema:Country",
> > >         "schema:Place",
> > >         "http://www.opengis.net/gml/_Feature",
> > >         "owl:Thing"
> > >       ],
> > >       "enhancer:extracted-from":
> > > "urn:content-item-sha1-c8ae372ed26679df14da13050dd432fd32c527e3",
> > >       "entityhub:site": "dbpedia"
> > >     },
> > >     {
> > >       "@id": "urn:enhancement-c50474e4-ea0e-03ff-5db5-a25f4c8dae45",
> > >       "@type": [
> > >         "enhancer:Enhancement",
> > >         "enhancer:EntityAnnotation"
> > >       ],
> > >       "dc:created": "2015-12-07T11:22:07.748Z",
> > >       "dc:creator":
> > >
> > >
> >
> "org.apache.stanbol.enhancer.engines.entitytagging.impl.NamedEntityTaggin=
gEngine",
> > >       "dc:relation":
> > > "urn:enhancement-e9c9c187-2d69-2c1f-6552-e76111430d4a",
> > >       "enhancer:confidence": 0.25715446,
> > >       "enhancer:entity-label": {
> > >         "@language": "en",
> > >         "@value": "Vichy France"
> > >       },
> > >       "enhancer:entity-reference": "
> > > http://dbpedia.org/resource/Vichy_France",
> > >       "enhancer:entity-type": [
> > >         "dbp-ont:Country",
> > >         "dbp-ont:Place",
> > >         "dbp-ont:PopulatedPlace",
> > >         "schema:Country",
> > >         "schema:Place",
> > >         "http://www.opengis.net/gml/_Feature",
> > >         "owl:Thing"
> > >       ],
> > >       "enhancer:extracted-from":
> > > "urn:content-item-sha1-c8ae372ed26679df14da13050dd432fd32c527e3",
> > >       "entityhub:site": "dbpedia"
> > >     },
> > >     {
> > >       "@id": "urn:enhancement-de07bc41-e4a1-f510-3f93-99ebfd8c39f4",
> > >       "@type": [
> > >         "enhancer:Enhancement",
> > >         "enhancer:EntityAnnotation"
> > >       ],
> > >       "dc:created": "2015-12-07T11:22:07.748Z",
> > >       "dc:creator":
> > >
> > >
> >
> "org.apache.stanbol.enhancer.engines.entitytagging.impl.NamedEntityTaggin=
gEngine",
> > >       "dc:relation":
> > > "urn:enhancement-8db13707-1ecd-b4df-90ad-52447c8f2c84",
> > >       "enhancer:confidence": 0.1493264,
> > >       "enhancer:entity-label": {
> > >         "@language": "en",
> > >         "@value": "Paris Commune"
> > >       },
> > >       "enhancer:entity-reference": "
> > > http://dbpedia.org/resource/Paris_Commune",
> > >       "enhancer:entity-type": [
> > >         "dbp-ont:Country",
> > >         "dbp-ont:Place",
> > >         "dbp-ont:PopulatedPlace",
> > >         "schema:Country",
> > >         "schema:Place",
> > >         "owl:Thing"
> > >       ],
> > >       "enhancer:extracted-from":
> > > "urn:content-item-sha1-c8ae372ed26679df14da13050dd432fd32c527e3",
> > >       "entityhub:site": "dbpedia"
> > >     },
> > >     {
> > >       "@id": "urn:enhancement-e9c9c187-2d69-2c1f-6552-e76111430d4a",
> > >       "@type": [
> > >         "enhancer:Enhancement",
> > >         "enhancer:TextAnnotation"
> > >       ],
> > >       "dc:created": "2015-12-07T11:22:07.740Z",
> > >       "dc:creator":
> > >
> > >
> >
> "org.apache.stanbol.enhancer.engines.opennlp.impl.NamedEntityExtractionEn=
hancementEngine",
> > >       "dc:type": "dbp-ont:Place",
> > >       "enhancer:confidence": 0.99354976,
> > >       "enhancer:end": 18,
> > >       "enhancer:extracted-from":
> > > "urn:content-item-sha1-c8ae372ed26679df14da13050dd432fd32c527e3",
> > >       "enhancer:selected-text": {
> > >         "@language": "en",
> > >         "@value": "France"
> > >       },
> > >       "enhancer:selection-context": {
> > >         "@language": "en",
> > >         "@value": "Paris is in France"
> > >       },
> > >       "enhancer:start": 12
> > >     }
> > >   ]
> > > }
> > >
> > >
> > >
> > >
> > >
> > >
> > > On Mon, Dec 7, 2015 at 4:23 PM, Karl Wright <daddywri@gmail.com>
> wrote:
> > >
> > > > Hi Dileepa,
> > > >
> > > > Repository connectors have an abstraction that allows them to
> generate
> > > > compound documents (where a document has a primary identifier, and
> > there
> > > > are subdocuments that share that primary identifier and have a
> > secondary
> > > > identifier).  This sounds a bit like what you are describing.  Does
> > > Stanbol
> > > > work by decorating an existing document, or does it work by
> generating
> > > all
> > > > content for a document?
> > > >
> > > > Karl
> > > >
> > > >
> > > > On Mon, Dec 7, 2015 at 5:12 AM, Dileepa Jayakody <
> djayakody@zaizi.com>
> > > > wrote:
> > > >
> > > > > Hi All,
> > > > >
> > > > >
> > > > > While thanking you all for your input on Stanbol connector
> > > requirement, I
> > > > > would like to continue with modifying the Stanbol connector to be
> > > > > compatible with any output connector. If you guys can give some
> > > guidance
> > > > on
> > > > > how the entity metadata should be added to the repository documen=
t
> I
> > > can
> > > > > modify the stanbol connector accordingly.
> > > > >
> > > > > From Rafa's comments, I gathered we can add the entity metadata t=
o
> > the
> > > > > repo.doc as key value pairs.
> > > > > However this idea is not yet clear to me. There could be 'N' numb=
er
> > of
> > > > > entities in a document and each of them will have some common
> > > attributes
> > > > > such as name, id, type and specific attributes for particular
> entity
> > > > type.
> > > > > I'm not clear on how to maintain that structure of N number of
> > entities
> > > > > with their attributes in a repo.document as key value pairs and
> make
> > > them
> > > > > LDPath compatible for retrieval in an output connector.
> > > > >
> > > > > @Rafa
> > > > > If you can please elaborate on your suggestion it would be greatl=
y
> > > > helpful
> > > > > to me.
> > > > > All other suggestions are also welcome.
> > > > >
> > > > > Thanks,
> > > > > Dileepa
> > > > >
> > > > >
> > > > > On Fri, Nov 13, 2015 at 7:00 PM, Karl Wright <daddywri@gmail.com>
> > > wrote:
> > > > >
> > > > > > I, too, agree.  Somebody will need to turn this connector into
> one
> > > that
> > > > > > plays by the rules.  It may be possible for someone on the team
> > here
> > > to
> > > > > do
> > > > > > that, but it won't be me; I'm seriously overextended at the
> moment.
> > > It
> > > > > > would be best if someone who knew the connector well could do t=
he
> > > > > necessary
> > > > > > work.
> > > > > >
> > > > > > Karl
> > > > > >
> > > > > >
> > > > > > On Fri, Nov 13, 2015 at 5:45 AM, Rafa Haro <
> rharoapache@gmail.com>
> > > > > wrote:
> > > > > >
> > > > > > > I must agree with Antonio. When I started to work on this I w=
as
> > > > > expecting
> > > > > > > the connector to work by just extracting the entities and
> > entities
> > > > > > metadata
> > > > > > > and put them as plain metadata of the documents, probably
> > following
> > > > > > LDPATH
> > > > > > > queries configuration
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > This is probably ok for Sensefy but I don=E2=80=99t think thi=
s could be
> > > > > suitable
> > > > > > > to be included in the project. But this is only my opinion. O=
f
> > > > course,
> > > > > a
> > > > > > > version of the connector that fully respect the ManifoldCF
> > > > architecture
> > > > > > > would be more than welcome in my opinion
> > > > > > >
> > > > > > > On Fri, Nov 13, 2015 at 11:38 AM, Antonio David P=C3=A9rez Mo=
rales
> > > > > > > <adperezmorales@gmail.com> wrote:
> > > > > > >
> > > > > > > > Hi
> > > > > > > > The removal of the SolrWrapper is a must. It was a
> requirement
> > > for
> > > > an
> > > > > > > > internal project which has nothing to do here with a normal
> > > > operation
> > > > > > of
> > > > > > > > Manifold, so forcing the users to use Solr does not fit the
> > > > Manifold
> > > > > > > > philosophy.
> > > > > > > > In my opinion, at this moment, a Stanbol connector with suc=
h
> a
> > > big
> > > > > > > > dependency which will not fit almost any use case is not ve=
ry
> > > > useful.
> > > > > > > > You should think a way to convert Stanbol connector into a
> > normal
> > > > > > > > Transformation connector without assuming that a specific
> > output
> > > > > > > connector
> > > > > > > > will be used.
> > > > > > > > Regards
> > > > > > > > 2015-11-13 11:20 GMT+01:00 Dileepa Jayakody <
> > djayakody@zaizi.com
> > > >:
> > > > > > > >> Hi guys,
> > > > > > > >>
> > > > > > > >> I have developed a Stanbol connector for MCF. You can chec=
k
> it
> > > out
> > > > > > from
> > > > > > > our
> > > > > > > >> github repo here:
> > > > > > > >>
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
> https://github.com/zaizi/sensefy-connectors/tree/master/transformation/mc=
f-stanbol-connector
> > > > > > > >>
> > > > > > > >> It requires the SolrWrapper output connector which indexes
> > > > enhanced
> > > > > > > >> documents, entities and entityTypes in separate Solr cores=
.
> > > > > Basically
> > > > > > it
> > > > > > > >> requires 3 separate solr cores configured with a specific
> Solr
> > > > > schema
> > > > > > > for
> > > > > > > >> primary documents, entities and entityTypes separately. Th=
is
> > was
> > > > > done
> > > > > > > for
> > > > > > > >> our specific use-case.
> > > > > > > >>
> > > > > > > >> The SolrWrapper code is here :
> > > > > > > >>
> > > > > > > >>
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> >
> https://github.com/zaizi/sensefy-connectors/tree/master/output/mcf-solrwr=
apperconnector
> > > > > > > >>
> > > > > > > >> Perhaps we can discuss and remove the Stanbol connector's
> > > > dependency
> > > > > > > with
> > > > > > > >> SolrWrapper and have it working with any output connector.
> > > > > > > >> Please note that the Stanbol connector currently has a bug
> in
> > > the
> > > > UI
> > > > > > > >> (editSpecification) which I'm working on at the moment.
> After
> > > > fixing
> > > > > > > that I
> > > > > > > >> will update here. And also I will provide documentations f=
or
> > > > > > configuring
> > > > > > > >> the connector.
> > > > > > > >>
> > > > > > > >> Thanks,
> > > > > > > >> Dileepa
> > > > > > > >>
> > > > > > > >> On Thu, Jul 9, 2015 at 8:36 PM, Antonio David P=C3=A9rez M=
orales
> <
> > > > > > > >> adperezmorales@gmail.com> wrote:
> > > > > > > >>
> > > > > > > >> > Hi Joshua
> > > > > > > >> >
> > > > > > > >> > It is not the list for that, but Marmotta is already
> > > integrated
> > > > in
> > > > > > > Apache
> > > > > > > >> > Stanbol. You can take a look at this issue
> > > > > > > >> > https://issues.apache.org/jira/browse/STANBOL-1165 .
> > > > > > > >> >
> > > > > > > >> > Anyway, as I said this is not the list for that, so let'=
s
> > use
> > > > the
> > > > > > > proper
> > > > > > > >> > list for these things.
> > > > > > > >> >
> > > > > > > >> > Regards
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> >
> > > > > > > >> > 2015-07-09 15:29 GMT+02:00 Joshua Dunham <
> > > > joshua.dunham@gmail.com
> > > > > >:
> > > > > > > >> >
> > > > > > > >> > > Hey Dileepa,
> > > > > > > >> > >
> > > > > > > >> > >       In case you were interested, I pinged the list a
> few
> > > > days
> > > > > > ago
> > > > > > > >> > asking
> > > > > > > >> > > for integration tips for Apache Marmotta.
> > > > > > > >> > >
> > > > > > > >> > > I got some great tips on how to do this which could he=
lp
> > > you.
> > > > > > Since
> > > > > > > >> > > Marmotta is a drop in replacement for Clarezza on
> Stanbol
> > it
> > > > may
> > > > > > be
> > > > > > > >> > easier
> > > > > > > >> > > for you to take this way.
> > > > > > > >> > >
> > > > > > > >> > > I'm not a Java programmer but I'm bringing this proble=
m
> to
> > > the
> > > > > > > >> > development
> > > > > > > >> > > staff at my company for assistance. If you like the
> > Marmotta
> > > > > > > approach
> > > > > > > >> we
> > > > > > > >> > > may gain more traction solving the same integration.
> > > > > > > >> > >
> > > > > > > >> > > I'm also integrating Marmotta with Stanbol so the effe=
ct
> > > would
> > > > > be
> > > > > > > the
> > > > > > > >> > same
> > > > > > > >> > > except not using the Stanbol API for data import in
> favor
> > of
> > > > > > > Marmotta.
> > > > > > > >> > >
> > > > > > > >> > > Best,
> > > > > > > >> > >
> > > > > > > >> > > -J
> > > > > > > >> > >
> > > > > > > >> > > > On Jul 9, 2015, at 1:03 AM, Dileepa Jayakody <
> > > > > > djayakody@zaizi.com
> > > > > > > >
> > > > > > > >> > > wrote:
> > > > > > > >> > > >
> > > > > > > >> > > > Hi all,
> > > > > > > >> > > >
> > > > > > > >> > > > Thanks you for the feedback and offering your help i=
n
> > > this.
> > > > > > > >> > > > Let me get back to you on where to start the code
> base.
> > > > > > > >> > > > As the first step, I would like to start by creating=
 a
> > > > > > > architecture
> > > > > > > >> > > diagram
> > > > > > > >> > > > for the connector.
> > > > > > > >> > > > I will send the diagram for your review soon.
> > > > > > > >> > > >
> > > > > > > >> > > > Thanks,
> > > > > > > >> > > > Dileepa
> > > > > > > >> > > >
> > > > > > > >> > > > --
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