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From vans...@apache.org
Subject [18/52] [partial] mahout git commit: removed all files except for website directory
Date Tue, 27 Jun 2017 16:14:43 GMT
http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/expected-arff-schema.json
----------------------------------------------------------------------
diff --git a/integration/src/test/resources/expected-arff-schema.json b/integration/src/test/resources/expected-arff-schema.json
deleted file mode 100644
index 36e0c89..0000000
--- a/integration/src/test/resources/expected-arff-schema.json
+++ /dev/null
@@ -1 +0,0 @@
-[{"values":["sunny","overcast","rain"],"attribute":"outlook","label":"false","type":"categorical"},{"attribute":"temperature","label":"false","type":"numerical"},{"attribute":"humidity","label":"false","type":"numerical"},{"values":["true","false"],"attribute":"windy","label":"false","type":"categorical"},{"values":["play","dont_play"],"attribute":"class","label":"true","type":"categorical"}]
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/non-numeric-1.arff
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diff --git a/integration/src/test/resources/non-numeric-1.arff b/integration/src/test/resources/non-numeric-1.arff
deleted file mode 100644
index bf0c746..0000000
--- a/integration/src/test/resources/non-numeric-1.arff
+++ /dev/null
@@ -1,24 +0,0 @@
-   % Comments
-   %
-   % Comments go here   %
-   @RELATION Mahout
-
-   @ATTRIBUTE junk  NUMERIC
-   @ATTRIBUTE foo  NUMERIC
-   @ATTRIBUTE bar   {c,d,'xy, numeric','marc o\'polo', e}
-   @ATTRIBUTE hockey  string
-   @ATTRIBUTE football   date "yyyy-MM-dd"
-
-
-
-   @DATA
-   {2 c,3 gretzky,4 1973-10-23}
-   {1 2.9,2 d,3 orr,4 1973-11-23}
-   {2 c,3 bossy,4 1981-10-23}
-   {1 2.6,2 c,3 lefleur,4 1989-10-23}
-   {3 esposito,4 1973-04-23}
-   {1 23.2,2 d,3 chelios,4 1999-2-23}
-   {3 richard,4 1973-10-12}
-   {3 howe,4 1983-06-23}
-   {0 2.2,2 d,3 messier,4 2008-11-23}
-   {2 c,3 roy,4 1973-10-13}

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/non-numeric-2.arff
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diff --git a/integration/src/test/resources/non-numeric-2.arff b/integration/src/test/resources/non-numeric-2.arff
deleted file mode 100644
index 6df35b5..0000000
--- a/integration/src/test/resources/non-numeric-2.arff
+++ /dev/null
@@ -1,24 +0,0 @@
-   % Comments
-   %
-   % Comments go here   %
-   @RELATION Mahout
-
-   @ATTRIBUTE junk  NUMERIC
-   @ATTRIBUTE foo  NUMERIC
-   @ATTRIBUTE test   {f,z}
-   @ATTRIBUTE hockey  string
-   @ATTRIBUTE football   date "yyyy-MM-dd"
-
-
-
-   @DATA
-   {2 f,3 gretzky,4 1973-10-23}
-   {1 2.9,2 z,3 orr,4 1973-11-23}
-   {2 f,3 bossy,4 1981-10-23}
-   {1 2.6,2 f,3 lefleur,4 1989-10-23}
-   {3 esposito,4 1973-04-23}
-   {1 23.2,2 z,3 chelios,4 1999-2-23}
-   {3 richard,4 1973-10-12}
-   {3 howe,4 1983-06-23}
-   {0 2.2,2 f,3 messier,4 2008-11-23}
-   {2 f,3 roy,4 1973-10-13}

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/quoted-id.arff
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diff --git a/integration/src/test/resources/quoted-id.arff b/integration/src/test/resources/quoted-id.arff
deleted file mode 100644
index 1f724ed..0000000
--- a/integration/src/test/resources/quoted-id.arff
+++ /dev/null
@@ -1,9 +0,0 @@
-@RELATION 'quotes'
-@ATTRIBUTE 'theNumeric' NUMERIC
-@ATTRIBUTE "theInteger" INTEGER
-@ATTRIBUTE theReal REAL
-@ATTRIBUTE theNominal {"double-quote", 'single-quote', no-quote}
-@DATA
-1.0,2,3.0,"no-quote"
-4.0,5,6.0,single-quote
-7.0,8,9.0,'double-quote'

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/sample-dense.arff
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diff --git a/integration/src/test/resources/sample-dense.arff b/integration/src/test/resources/sample-dense.arff
deleted file mode 100644
index dbf5dd2..0000000
--- a/integration/src/test/resources/sample-dense.arff
+++ /dev/null
@@ -1,20 +0,0 @@
-   % Comments
-   %
-   % Comments go here   %
-   @RELATION golf
-
-   @ATTRIBUTE outlook {sunny,overcast, rain}
-   @ATTRIBUTE temperature   NUMERIC
-   @ATTRIBUTE humidity  NUMERIC
-   @ATTRIBUTE windy {false, true}
-   @ATTRIBUTE class {dont_play, play}
-
-
-
-   @DATA
-   sunny,    65, ?, false, dont_play, {2}
-   sunny,    80, 90,  true, dont_play
-   overcast, 83, 78, false, play ,{3}
-   rain,     70, 96, false, play
-   rain,     68, 80, false, play
-   rain,     65, 70, true, play

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/sample-sparse.arff
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diff --git a/integration/src/test/resources/sample-sparse.arff b/integration/src/test/resources/sample-sparse.arff
deleted file mode 100644
index 25e1f9c..0000000
--- a/integration/src/test/resources/sample-sparse.arff
+++ /dev/null
@@ -1,24 +0,0 @@
-   % Comments
-   %
-   % Comments go here   %
-   @RELATION Mahout
-
-   @ATTRIBUTE foo  NUMERIC
-   @ATTRIBUTE bar   NUMERIC
-   @ATTRIBUTE hockey  NUMERIC
-   @ATTRIBUTE football   NUMERIC
-   @ATTRIBUTE tennis   NUMERIC
-
-
-
-   @DATA
-   {1 23.1,2 3.23,3 1.2,4 ?} {5}
-   {0 2.9}
-   {0 2.7,2 3.2,3 1.3,4 0.2} {10}
-   {1 2.6,2 3.1,3 1.23,4 0.2}
-   {1 23.0,2 3.6,3 1.2,4 0.2}
-   {0 23.2,1 3.9,3 1.7,4 0.2}
-   {0 2.6,1 3.2,2 1.2,4 0.3}
-   {1 23.0,2 3.2,3 1.23}
-   {1 2.2,2 2.94,3 0.2}
-   {1 2.9,2 3.1}

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/sample.arff
----------------------------------------------------------------------
diff --git a/integration/src/test/resources/sample.arff b/integration/src/test/resources/sample.arff
deleted file mode 100644
index cd04b32..0000000
--- a/integration/src/test/resources/sample.arff
+++ /dev/null
@@ -1,11 +0,0 @@
-%comments
-@RELATION Mahout
-@ATTRIBUTE foo numeric
-@ATTRIBUTE bar numeric
-@ATTRIBUTE timestamp DATE "yyyy-MM-dd HH:mm:ss"
-@ATTRIBUTE junk string
-@ATTRIBUTE theNominal {c,b,a}
-@DATA
-1,2, "2009-01-01 5:55:55", foo, c
-2,3
-{0 5,1 23}

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/integration/src/test/resources/test.mbox
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diff --git a/integration/src/test/resources/test.mbox b/integration/src/test/resources/test.mbox
deleted file mode 100644
index 99017c0..0000000
--- a/integration/src/test/resources/test.mbox
+++ /dev/null
@@ -1,1038 +0,0 @@
-From dev-return-102527-apmail-cocoon-dev-archive=cocoon.apache.org@cocoon.apache.org Wed Sep 01 21:01:35 2010
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-Date: Wed, 1 Sep 2010 17:00:54 -0400 (EDT)
-From: "Douglas Hurbon (JIRA)" <jira@apache.org>
-To: dev@cocoon.apache.org
-Subject: [jira] Created: (COCOON-2300) jboss-5.1.0.GA vfszip protocol in
- CharsetFactory
-MIME-Version: 1.0
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-
-jboss-5.1.0.GA vfszip protocol in CharsetFactory
-------------------------------------------------
-
-                 Key: COCOON-2300
-                 URL: https://issues.apache.org/jira/browse/COCOON-2300
-             Project: Cocoon
-          Issue Type: Bug
-          Components: Blocks: Serializers
-    Affects Versions: 2.1.11
-            Reporter: Douglas Hurbon
-             Fix For: 2.1.12-dev (Current SVN)
-
-
-Cocoon fails to initialize on Jboss 5.1 due to the new vfszip protocol it uses for class loading.  CharsetFactory expects either jar:/ or file:/
-
-Parsing the vfszip protocol in CharsetFactory solves the problem.
-
---
-This message is automatically generated by JIRA.
--
-You can reply to this email to add a comment to the issue online.
-
-
-From dev-return-102528-apmail-cocoon-dev-archive=cocoon.apache.org@cocoon.apache.org Wed Sep 01 21:03:16 2010
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-From: "Douglas Hurbon (JIRA)" <jira@apache.org>
-To: dev@cocoon.apache.org
-Subject: [jira] Updated: (COCOON-2300) jboss-5.1.0.GA vfszip protocol in
- CharsetFactory
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-
-     [ https://issues.apache.org/jira/browse/COCOON-2300?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
-
-Douglas Hurbon updated COCOON-2300:
------------------------------------
-
-    Attachment: CharsetFactory.patch
-
-Patch for the CharsetFactory running on Jboss 5.1.
-
-> jboss-5.1.0.GA vfszip protocol in CharsetFactory
-> ------------------------------------------------
->
->                 Key: COCOON-2300
->                 URL: https://issues.apache.org/jira/browse/COCOON-2300
->             Project: Cocoon
->          Issue Type: Bug
->          Components: Blocks: Serializers
->    Affects Versions: 2.1.11
->            Reporter: Douglas Hurbon
->             Fix For: 2.1.12-dev (Current SVN)
->
->         Attachments: CharsetFactory.patch
->
->
-> Cocoon fails to initialize on Jboss 5.1 due to the new vfszip protocol it uses for class loading.  CharsetFactory expects either jar:/ or file:/
-> Parsing the vfszip protocol in CharsetFactory solves the problem.
-
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-This message is automatically generated by JIRA.
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-You can reply to this email to add a comment to the issue online.
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-From dev-return-102529-apmail-cocoon-dev-archive=cocoon.apache.org@cocoon.apache.org Wed Sep 08 14:41:10 2010
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-Issue Subscription
-Filter: COCOON-open-with-patch (114 issues)
-Subscriber: cocoon
-
-Key         Summary
-COCOON-2300 jboss-5.1.0.GA vfszip protocol in CharsetFactory
-            https://issues.apache.org/jira/browse/COCOON-2300
-COCOON-2298 IncludeTransformer does not handle multi-valued parameters
-            https://issues.apache.org/jira/browse/COCOON-2298
-COCOON-2297 Character encoding does not follow JTidy properties
-            https://issues.apache.org/jira/browse/COCOON-2297
-COCOON-2296 [PATCH] Make flowscript work with Commons JXPath 1.3
-            https://issues.apache.org/jira/browse/COCOON-2296
-COCOON-2295 integrating FOP-1.0 into Cocoon-2.1.12-dev
-            https://issues.apache.org/jira/browse/COCOON-2295
-COCOON-2294 Wrong version number for cocoon-serializers-impl in parent pom for revision 964648
-            https://issues.apache.org/jira/browse/COCOON-2294
-COCOON-2290 CLONE - Add a read method to the SitemapComponentTestCase
-            https://issues.apache.org/jira/browse/COCOON-2290
-COCOON-2288 Allow usage of SLF4J for traces
-            https://issues.apache.org/jira/browse/COCOON-2288
-COCOON-2281 "Communication tools that we use" link to dev mailing list archive comes out at user mailing list archive
-            https://issues.apache.org/jira/browse/COCOON-2281
-COCOON-2268 To extend the image reader we need to change the visibility to the parameter of the ImageReader
-            https://issues.apache.org/jira/browse/COCOON-2268
-COCOON-2262 container.refresh() is called before embeddedServlet.init()
-            https://issues.apache.org/jira/browse/COCOON-2262
-COCOON-2260 wrong parent version in pom of cocoon-flowscript-impl
-            https://issues.apache.org/jira/browse/COCOON-2260
-COCOON-2249 XHTMLSerializer uses entity references &quot; and &apos; which cause JavaScript parse errors
-            https://issues.apache.org/jira/browse/COCOON-2249
-COCOON-2246 HttpRequest  should handle encoding in getParameter and getParameterValues in the same way
-            https://issues.apache.org/jira/browse/COCOON-2246
-COCOON-2233 Update archetypes to current trunk artifact versions
-            https://issues.apache.org/jira/browse/COCOON-2233
-COCOON-2222 Add SaxParser configuration properties
-            https://issues.apache.org/jira/browse/COCOON-2222
-COCOON-2216 IncludeCacheManager can not perfom parallel includes
-            https://issues.apache.org/jira/browse/COCOON-2216
-COCOON-2212 jx:attribute does not check name is correct before proceeding
-            https://issues.apache.org/jira/browse/COCOON-2212
-COCOON-2197 Making the cocoon-auth-block acegi-security-sample work
-            https://issues.apache.org/jira/browse/COCOON-2197
-COCOON-2173 AbstractCachingProcessingPipeline: Two requests can deadlock each other
-            https://issues.apache.org/jira/browse/COCOON-2173
-COCOON-2162 [PATCH] Fix for Paginator when accessing out of bounds Pagination page
-            https://issues.apache.org/jira/browse/COCOON-2162
-COCOON-2137 XSD Schemas for CForms Development
-            https://issues.apache.org/jira/browse/COCOON-2137
-COCOON-2114 fix sorting in TraversableGenerator
-            https://issues.apache.org/jira/browse/COCOON-2114
-COCOON-2108 xmodule:flow-attr Does not accept document objects
-            https://issues.apache.org/jira/browse/COCOON-2108
-COCOON-2100 Retrieving mimeType returned by pipeline executed from Flow
-            https://issues.apache.org/jira/browse/COCOON-2100
-COCOON-2040 Union widget does not work with booleanfield set as case widget
-            https://issues.apache.org/jira/browse/COCOON-2040
-COCOON-2037 New DynamicGroup widget
-            https://issues.apache.org/jira/browse/COCOON-2037
-COCOON-2032 [PATCH] Sort order in paginated repeater
-            https://issues.apache.org/jira/browse/COCOON-2032
-COCOON-2030 submit-on-change doesn't work for a multivaluefield with list-type="checkbox"
-            https://issues.apache.org/jira/browse/COCOON-2030
-COCOON-2018 Use thread context class loader to load custom binding classes
-            https://issues.apache.org/jira/browse/COCOON-2018
-COCOON-2017 More output beautification options for serializers
-            https://issues.apache.org/jira/browse/COCOON-2017
-COCOON-2015 Doctype added twice because root element (html) is inlined
-            https://issues.apache.org/jira/browse/COCOON-2015
-COCOON-2002 HTML transformer  only works with latin-1 characters
-            https://issues.apache.org/jira/browse/COCOON-2002
-COCOON-1974 Donating ContextAttributeInputModule
-            https://issues.apache.org/jira/browse/COCOON-1974
-COCOON-1973 CaptchaValidator: allow case-insensitive matching
-            https://issues.apache.org/jira/browse/COCOON-1973
-COCOON-1964 Redirects inside a block called via the servlet protocol fail
-            https://issues.apache.org/jira/browse/COCOON-1964
-COCOON-1963 Add a redirect action to the browser update handler
-            https://issues.apache.org/jira/browse/COCOON-1963
-COCOON-1960 Pipeline errors for "generator/reader already set" should provide more information
-            https://issues.apache.org/jira/browse/COCOON-1960
-COCOON-1949 [PATCH] load flowscript from file into specified Rhino context object
-            https://issues.apache.org/jira/browse/COCOON-1949
-COCOON-1946 [PATCH] - Javaflow Sample errors trying to enhance Javaflow classes and showing cform templates
-            https://issues.apache.org/jira/browse/COCOON-1946
-COCOON-1943 [Patch] Parameters in blocks-protocol URIs get decoded too early
-            https://issues.apache.org/jira/browse/COCOON-1943
-COCOON-1932 [PATCH] correct styling of disabled suggestion lists
-            https://issues.apache.org/jira/browse/COCOON-1932
-COCOON-1929 [PATCH] Reloading classloader in Cocoon 2.2
-            https://issues.apache.org/jira/browse/COCOON-1929
-COCOON-1917 Request Encoding problem: multipart/form vs. url encoded
-            https://issues.apache.org/jira/browse/COCOON-1917
-COCOON-1915 Nullable value with additional String or XMLizable in JavaSelectionList
-            https://issues.apache.org/jira/browse/COCOON-1915
-COCOON-1914 Text as XMLizable in EmptySelectionList
-            https://issues.apache.org/jira/browse/COCOON-1914
-COCOON-1899 [PATCH] Cocoon XML:DB Implementation should not depend on Xindice
-            https://issues.apache.org/jira/browse/COCOON-1899
-COCOON-1898 [PATCH] XPatch support for maven-cocoon-deployer-plugin
-            https://issues.apache.org/jira/browse/COCOON-1898
-COCOON-1893 XML-Binding: Problem creating a new element
-            https://issues.apache.org/jira/browse/COCOON-1893
-COCOON-1877 [PATCH] Pageable Repeater
-            https://issues.apache.org/jira/browse/COCOON-1877
-COCOON-1870 Lucene block does not store attributes when instructed so
-            https://issues.apache.org/jira/browse/COCOON-1870
-COCOON-1846 [PATCH] BooleanField and radio do not send on-value-changed at the rigth time with IE
-            https://issues.apache.org/jira/browse/COCOON-1846
-COCOON-1843 LDAPTransformer: add-entry tag doesn't work
-            https://issues.apache.org/jira/browse/COCOON-1843
-COCOON-1842 LDAPTransformer: ClassCastException with Binary fields
-            https://issues.apache.org/jira/browse/COCOON-1842
-COCOON-1810 [PATCH] JMSEventMessageListener does not work
-            https://issues.apache.org/jira/browse/COCOON-1810
-COCOON-1807 Workaround for IE Bug in <button>
-            https://issues.apache.org/jira/browse/COCOON-1807
-COCOON-1794 [PATCH] Propagation of namespaces to a repeaters child bindings and implementation of a move-node binding
-            https://issues.apache.org/jira/browse/COCOON-1794
-COCOON-1738 double-listbox problem in repeaters
-            https://issues.apache.org/jira/browse/COCOON-1738
-COCOON-1726 Implementation of Source that supports conditional GETs
-            https://issues.apache.org/jira/browse/COCOON-1726
-COCOON-1717 Use custom cache keys for caching uri coplets using input modules.
-            https://issues.apache.org/jira/browse/COCOON-1717
-COCOON-1697 Allow request parameters to be used in "for (var k in h)" kind of Javascript Loops
-            https://issues.apache.org/jira/browse/COCOON-1697
-COCOON-1648 Add support for ISO8601 in I18nTransformer and Forms
-            https://issues.apache.org/jira/browse/COCOON-1648
-COCOON-1618 [PATCH] SoapGenerator/Serializer for Axis Block
-            https://issues.apache.org/jira/browse/COCOON-1618
-COCOON-1611 [PATCH] Add additonal constructor to FormInstance.java to be able to pass a locale
-            https://issues.apache.org/jira/browse/COCOON-1611
-COCOON-1603 [PATCH] handling of alternatives in MailTransformer
-            https://issues.apache.org/jira/browse/COCOON-1603
-COCOON-1573 Improvement SetAttributeJXPathBinding and Contribution SetNodeValueJXPathBinding
-            https://issues.apache.org/jira/browse/COCOON-1573
-COCOON-1556 [PATCH] Add a JXPathConvertor for conversion betwean beans and Strings
-            https://issues.apache.org/jira/browse/COCOON-1556
-COCOON-1535 [PATCH] enhancement to {global:} input module: return all sitemap globals
-            https://issues.apache.org/jira/browse/COCOON-1535
-COCOON-1527 [PATCH] Cache control logic sheets for XSP to override getKey and getValidity
-            https://issues.apache.org/jira/browse/COCOON-1527
-COCOON-1526 [PATCH] processToDOM returns a read-only DOM
-            https://issues.apache.org/jira/browse/COCOON-1526
-COCOON-1519 [PATCH] TeeTransformer refactoring
-            https://issues.apache.org/jira/browse/COCOON-1519
-COCOON-1508 [PATCH] Avalonize TranscoderFactory
-            https://issues.apache.org/jira/browse/COCOON-1508
-COCOON-1506 [PATCH] Manually specifying a mounted sitemap's context
-            https://issues.apache.org/jira/browse/COCOON-1506
-COCOON-1488 [PATCH] htmlunit-based testing, needs to be ported to 2.2
-            https://issues.apache.org/jira/browse/COCOON-1488
-COCOON-1467 ESQL exception handling problem
-            https://issues.apache.org/jira/browse/COCOON-1467
-COCOON-1439 [poi] vertical text orientation and font cache
-            https://issues.apache.org/jira/browse/COCOON-1439
-COCOON-1398 New CachingPortletAdapter
-            https://issues.apache.org/jira/browse/COCOON-1398
-COCOON-1395 [PATCH] Missing ContextAttributeInputModule
-            https://issues.apache.org/jira/browse/COCOON-1395
-COCOON-1394 [PATCH] Implementation of PortletRequest#getQueryString()
-            https://issues.apache.org/jira/browse/COCOON-1394
-COCOON-1384 [PATCH] flow redirector should allow explicit 'cocoon:' scheme
-            https://issues.apache.org/jira/browse/COCOON-1384
-COCOON-1370 [PATCH] proxy block can now use JTidy and handle multipart POST
-            https://issues.apache.org/jira/browse/COCOON-1370
-COCOON-1368 [PATCH] HTTPRequestTransformer
-            https://issues.apache.org/jira/browse/COCOON-1368
-COCOON-1362 [PATCH] log4j.xconf should have the same default config as logkit.xconf
-            https://issues.apache.org/jira/browse/COCOON-1362
-COCOON-1360 [patch] client side validation for CForms
-            https://issues.apache.org/jira/browse/COCOON-1360
-COCOON-1345 [PATCH] Extract convertors into their own block
-            https://issues.apache.org/jira/browse/COCOON-1345
-COCOON-1340 [PATCH] lucene block contribution : a AnalyzerManager component
-            https://issues.apache.org/jira/browse/COCOON-1340
-COCOON-1337 [PATCH] Suggestion for widget population
-            https://issues.apache.org/jira/browse/COCOON-1337
-COCOON-1336 [PATCH] PortletWindowAspect: hiding portlet mode icons and new feature "force-sizable"
-            https://issues.apache.org/jira/browse/COCOON-1336
-COCOON-1332 [PATCH] content-length and content-type for portlet ActionRequest
-            https://issues.apache.org/jira/browse/COCOON-1332
-COCOON-1329 [PATCH] Fix for cocoon.jar bundled in ear common for portal.war and portlet.war
-            https://issues.apache.org/jira/browse/COCOON-1329
-COCOON-1325 [PATCH] commons-fileupload based multipart parser
-            https://issues.apache.org/jira/browse/COCOON-1325
-COCOON-1302 [Patch] Word Document Generator
-            https://issues.apache.org/jira/browse/COCOON-1302
-COCOON-1295 ParallelContentAggregator, multithreaded aggregating
-            https://issues.apache.org/jira/browse/COCOON-1295
-COCOON-1260 [PATCH] MultipartParser can now handle multipart/mixed
-            https://issues.apache.org/jira/browse/COCOON-1260
-COCOON-1254 [Patch] OWQLTransformer + RDQLTransformer
-            https://issues.apache.org/jira/browse/COCOON-1254
-COCOON-1249 [Patch] XMLDBSource should accept scheme://user:pass@host:port/path URIs
-            https://issues.apache.org/jira/browse/COCOON-1249
-COCOON-1232 [PATCH] NEW--ModuleDB Action for ORACLE( auto. increment )
-            https://issues.apache.org/jira/browse/COCOON-1232
-COCOON-1203 [PATCH] inserver junit testing
-            https://issues.apache.org/jira/browse/COCOON-1203
-COCOON-1200 [PATCH] XML CSS engine
-            https://issues.apache.org/jira/browse/COCOON-1200
-COCOON-1185 [PATCH] BerkeleyDBStore
-            https://issues.apache.org/jira/browse/COCOON-1185
-COCOON-1147 [PATCH] namespace issues with XMLDBTransformer
-            https://issues.apache.org/jira/browse/COCOON-1147
-COCOON-1125 [PATCH] Updated CastorTransformer + samples
-            https://issues.apache.org/jira/browse/COCOON-1125
-COCOON-1027 [PATCH] CocoonBean add additional features for reprocessing pipelines and interrupt processing
-            https://issues.apache.org/jira/browse/COCOON-1027
-COCOON-996  [PATCH] LuceneIndexContentHandler.java produces CLOBs
-            https://issues.apache.org/jira/browse/COCOON-996
-COCOON-988  [PATCH] StreamGenerator can't handle multipart request parameters correctly
-            https://issues.apache.org/jira/browse/COCOON-988
-COCOON-881  [PATCH] file upload component for usage with flowscript
-            https://issues.apache.org/jira/browse/COCOON-881
-COCOON-871  [PATCH] XML posting from SourceWritingTransformer by using an enhanced HTTPClientSource
-            https://issues.apache.org/jira/browse/COCOON-871
-COCOON-867  [PATCH] wsinclude and htmlinclude transformers
-            https://issues.apache.org/jira/browse/COCOON-867
-COCOON-865  [PATCH] New ResourceLoadAction
-            https://issues.apache.org/jira/browse/COCOON-865
-COCOON-844  [PATCH] adding <wd:on-phase> and moving load() and save() to Form.
-            https://issues.apache.org/jira/browse/COCOON-844
-COCOON-825  [PATCH] Fix Bug: Better handling of CLOB in esql (get-xml) and handling of Oracle 'temporary lobs'
-            https://issues.apache.org/jira/browse/COCOON-825
-COCOON-719  [PATCH] Support for transactions in SQLTransformer
-            https://issues.apache.org/jira/browse/COCOON-719
-COCOON-717  [PATCH] Namespace cleanup in HTMLSerializer
-            https://issues.apache.org/jira/browse/COCOON-717
-COCOON-665  [PATCH] HSSFSerializer Support for FreezePane
-            https://issues.apache.org/jira/browse/COCOON-665
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-From dev-return-102530-apmail-cocoon-dev-archive=cocoon.apache.org@cocoon.apache.org Thu Sep 09 21:09:56 2010
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-From: "Douglas Hurbon (JIRA)" <jira@apache.org>
-To: dev@cocoon.apache.org
-Subject: [jira] Created: (COCOON-2301) Cocoon Cron Block Configurable
- Clustering
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-Cocoon Cron Block Configurable Clustering
------------------------------------------
-
-                 Key: COCOON-2301
-                 URL: https://issues.apache.org/jira/browse/COCOON-2301
-             Project: Cocoon
-          Issue Type: Improvement
-          Components: Blocks: Cron
-    Affects Versions: 2.1.11
-            Reporter: Douglas Hurbon
-
-
-The QuartzJobScheduler is modified to respond to a configuration parameter: clustered=true so that it can correctly use a clustered job store when using cocoon in a cluster.
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-From: "Douglas Hurbon (JIRA)" <jira@apache.org>
-To: dev@cocoon.apache.org
-Subject: [jira] Updated: (COCOON-2301) Cocoon Cron Block Configurable
- Clustering
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-Douglas Hurbon updated COCOON-2301:
------------------------------------
-
-    Attachment: QuartzJobScheduler.patch
-
-Patch to make cocoon_2_1_x/src/blocks/cron/java/org/apache/cocoon/components/cron/QuartzJobScheduler.java respond correctly to configuration for clustering.
-
-> Cocoon Cron Block Configurable Clustering
-> -----------------------------------------
->
->                 Key: COCOON-2301
->                 URL: https://issues.apache.org/jira/browse/COCOON-2301
->             Project: Cocoon
->          Issue Type: Improvement
->          Components: Blocks: Cron
->    Affects Versions: 2.1.11
->            Reporter: Douglas Hurbon
->         Attachments: QuartzJobScheduler.patch
->
->
-> The QuartzJobScheduler is modified to respond to a configuration parameter: clustered=true so that it can correctly use a clustered job store when using cocoon in a cluster.
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-Key         Summary
-COCOON-2301 Cocoon Cron Block Configurable Clustering
-            https://issues.apache.org/jira/browse/COCOON-2301
-COCOON-2300 jboss-5.1.0.GA vfszip protocol in CharsetFactory
-            https://issues.apache.org/jira/browse/COCOON-2300
-COCOON-2298 IncludeTransformer does not handle multi-valued parameters
-            https://issues.apache.org/jira/browse/COCOON-2298
-COCOON-2297 Character encoding does not follow JTidy properties
-            https://issues.apache.org/jira/browse/COCOON-2297
-COCOON-2296 [PATCH] Make flowscript work with Commons JXPath 1.3
-            https://issues.apache.org/jira/browse/COCOON-2296
-COCOON-2295 integrating FOP-1.0 into Cocoon-2.1.12-dev
-            https://issues.apache.org/jira/browse/COCOON-2295
-COCOON-2294 Wrong version number for cocoon-serializers-impl in parent pom for revision 964648
-            https://issues.apache.org/jira/browse/COCOON-2294
-COCOON-2290 CLONE - Add a read method to the SitemapComponentTestCase
-            https://issues.apache.org/jira/browse/COCOON-2290
-COCOON-2288 Allow usage of SLF4J for traces
-            https://issues.apache.org/jira/browse/COCOON-2288
-COCOON-2281 "Communication tools that we use" link to dev mailing list archive comes out at user mailing list archive
-            https://issues.apache.org/jira/browse/COCOON-2281
-COCOON-2268 To extend the image reader we need to change the visibility to the parameter of the ImageReader
-            https://issues.apache.org/jira/browse/COCOON-2268
-COCOON-2262 container.refresh() is called before embeddedServlet.init()
-            https://issues.apache.org/jira/browse/COCOON-2262
-COCOON-2260 wrong parent version in pom of cocoon-flowscript-impl
-            https://issues.apache.org/jira/browse/COCOON-2260
-COCOON-2249 XHTMLSerializer uses entity references &quot; and &apos; which cause JavaScript parse errors
-            https://issues.apache.org/jira/browse/COCOON-2249
-COCOON-2246 HttpRequest  should handle encoding in getParameter and getParameterValues in the same way
-            https://issues.apache.org/jira/browse/COCOON-2246
-COCOON-2233 Update archetypes to current trunk artifact versions
-            https://issues.apache.org/jira/browse/COCOON-2233
-COCOON-2222 Add SaxParser configuration properties
-            https://issues.apache.org/jira/browse/COCOON-2222
-COCOON-2216 IncludeCacheManager can not perfom parallel includes
-            https://issues.apache.org/jira/browse/COCOON-2216
-COCOON-2212 jx:attribute does not check name is correct before proceeding
-            https://issues.apache.org/jira/browse/COCOON-2212
-COCOON-2197 Making the cocoon-auth-block acegi-security-sample work
-            https://issues.apache.org/jira/browse/COCOON-2197
-COCOON-2173 AbstractCachingProcessingPipeline: Two requests can deadlock each other
-            https://issues.apache.org/jira/browse/COCOON-2173
-COCOON-2162 [PATCH] Fix for Paginator when accessing out of bounds Pagination page
-            https://issues.apache.org/jira/browse/COCOON-2162
-COCOON-2137 XSD Schemas for CForms Development
-            https://issues.apache.org/jira/browse/COCOON-2137
-COCOON-2114 fix sorting in TraversableGenerator
-            https://issues.apache.org/jira/browse/COCOON-2114
-COCOON-2108 xmodule:flow-attr Does not accept document objects
-            https://issues.apache.org/jira/browse/COCOON-2108
-COCOON-2100 Retrieving mimeType returned by pipeline executed from Flow
-            https://issues.apache.org/jira/browse/COCOON-2100
-COCOON-2040 Union widget does not work with booleanfield set as case widget
-            https://issues.apache.org/jira/browse/COCOON-2040
-COCOON-2037 New DynamicGroup widget
-            https://issues.apache.org/jira/browse/COCOON-2037
-COCOON-2032 [PATCH] Sort order in paginated repeater
-            https://issues.apache.org/jira/browse/COCOON-2032
-COCOON-2030 submit-on-change doesn't work for a multivaluefield with list-type="checkbox"
-            https://issues.apache.org/jira/browse/COCOON-2030
-COCOON-2018 Use thread context class loader to load custom binding classes
-            https://issues.apache.org/jira/browse/COCOON-2018
-COCOON-2017 More output beautification options for serializers
-            https://issues.apache.org/jira/browse/COCOON-2017
-COCOON-2015 Doctype added twice because root element (html) is inlined
-            https://issues.apache.org/jira/browse/COCOON-2015
-COCOON-2002 HTML transformer  only works with latin-1 characters
-            https://issues.apache.org/jira/browse/COCOON-2002
-COCOON-1974 Donating ContextAttributeInputModule
-            https://issues.apache.org/jira/browse/COCOON-1974
-COCOON-1973 CaptchaValidator: allow case-insensitive matching
-            https://issues.apache.org/jira/browse/COCOON-1973
-COCOON-1964 Redirects inside a block called via the servlet protocol fail
-            https://issues.apache.org/jira/browse/COCOON-1964
-COCOON-1963 Add a redirect action to the browser update handler
-            https://issues.apache.org/jira/browse/COCOON-1963
-COCOON-1960 Pipeline errors for "generator/reader already set" should provide more information
-            https://issues.apache.org/jira/browse/COCOON-1960
-COCOON-1949 [PATCH] load flowscript from file into specified Rhino context object
-            https://issues.apache.org/jira/browse/COCOON-1949
-COCOON-1946 [PATCH] - Javaflow Sample errors trying to enhance Javaflow classes and showing cform templates
-            https://issues.apache.org/jira/browse/COCOON-1946
-COCOON-1943 [Patch] Parameters in blocks-protocol URIs get decoded too early
-            https://issues.apache.org/jira/browse/COCOON-1943
-COCOON-1932 [PATCH] correct styling of disabled suggestion lists
-            https://issues.apache.org/jira/browse/COCOON-1932
-COCOON-1929 [PATCH] Reloading classloader in Cocoon 2.2
-            https://issues.apache.org/jira/browse/COCOON-1929
-COCOON-1917 Request Encoding problem: multipart/form vs. url encoded
-            https://issues.apache.org/jira/browse/COCOON-1917
-COCOON-1915 Nullable value with additional String or XMLizable in JavaSelectionList
-            https://issues.apache.org/jira/browse/COCOON-1915
-COCOON-1914 Text as XMLizable in EmptySelectionList
-            https://issues.apache.org/jira/browse/COCOON-1914
-COCOON-1899 [PATCH] Cocoon XML:DB Implementation should not depend on Xindice
-            https://issues.apache.org/jira/browse/COCOON-1899
-COCOON-1898 [PATCH] XPatch support for maven-cocoon-deployer-plugin
-            https://issues.apache.org/jira/browse/COCOON-1898
-COCOON-1893 XML-Binding: Problem creating a new element
-            https://issues.apache.org/jira/browse/COCOON-1893
-COCOON-1877 [PATCH] Pageable Repeater
-            https://issues.apache.org/jira/browse/COCOON-1877
-COCOON-1870 Lucene block does not store attributes when instructed so
-            https://issues.apache.org/jira/browse/COCOON-1870
-COCOON-1846 [PATCH] BooleanField and radio do not send on-value-changed at the rigth time with IE
-            https://issues.apache.org/jira/browse/COCOON-1846
-COCOON-1843 LDAPTransformer: add-entry tag doesn't work
-            https://issues.apache.org/jira/browse/COCOON-1843
-COCOON-1842 LDAPTransformer: ClassCastException with Binary fields
-            https://issues.apache.org/jira/browse/COCOON-1842
-COCOON-1810 [PATCH] JMSEventMessageListener does not work
-            https://issues.apache.org/jira/browse/COCOON-1810
-COCOON-1807 Workaround for IE Bug in <button>
-            https://issues.apache.org/jira/browse/COCOON-1807
-COCOON-1794 [PATCH] Propagation of namespaces to a repeaters child bindings and implementation of a move-node binding
-            https://issues.apache.org/jira/browse/COCOON-1794
-COCOON-1738 double-listbox problem in repeaters
-            https://issues.apache.org/jira/browse/COCOON-1738
-COCOON-1726 Implementation of Source that supports conditional GETs
-            https://issues.apache.org/jira/browse/COCOON-1726
-COCOON-1717 Use custom cache keys for caching uri coplets using input modules.
-            https://issues.apache.org/jira/browse/COCOON-1717
-COCOON-1697 Allow request parameters to be used in "for (var k in h)" kind of Javascript Loops
-            https://issues.apache.org/jira/browse/COCOON-1697
-COCOON-1648 Add support for ISO8601 in I18nTransformer and Forms
-            https://issues.apache.org/jira/browse/COCOON-1648
-COCOON-1618 [PATCH] SoapGenerator/Serializer for Axis Block
-            https://issues.apache.org/jira/browse/COCOON-1618
-COCOON-1611 [PATCH] Add additonal constructor to FormInstance.java to be able to pass a locale
-            https://issues.apache.org/jira/browse/COCOON-1611
-COCOON-1603 [PATCH] handling of alternatives in MailTransformer
-            https://issues.apache.org/jira/browse/COCOON-1603
-COCOON-1573 Improvement SetAttributeJXPathBinding and Contribution SetNodeValueJXPathBinding
-            https://issues.apache.org/jira/browse/COCOON-1573
-COCOON-1556 [PATCH] Add a JXPathConvertor for conversion betwean beans and Strings
-            https://issues.apache.org/jira/browse/COCOON-1556
-COCOON-1535 [PATCH] enhancement to {global:} input module: return all sitemap globals
-            https://issues.apache.org/jira/browse/COCOON-1535
-COCOON-1527 [PATCH] Cache control logic sheets for XSP to override getKey and getValidity
-            https://issues.apache.org/jira/browse/COCOON-1527
-COCOON-1526 [PATCH] processToDOM returns a read-only DOM
-            https://issues.apache.org/jira/browse/COCOON-1526
-COCOON-1519 [PATCH] TeeTransformer refactoring
-            https://issues.apache.org/jira/browse/COCOON-1519
-COCOON-1508 [PATCH] Avalonize TranscoderFactory
-            https://issues.apache.org/jira/browse/COCOON-1508
-COCOON-1506 [PATCH] Manually specifying a mounted sitemap's context
-            https://issues.apache.org/jira/browse/COCOON-1506
-COCOON-1488 [PATCH] htmlunit-based testing, needs to be ported to 2.2
-            https://issues.apache.org/jira/browse/COCOON-1488
-COCOON-1467 ESQL exception handling problem
-            https://issues.apache.org/jira/browse/COCOON-1467
-COCOON-1439 [poi] vertical text orientation and font cache
-            https://issues.apache.org/jira/browse/COCOON-1439
-COCOON-1398 New CachingPortletAdapter
-            https://issues.apache.org/jira/browse/COCOON-1398
-COCOON-1395 [PATCH] Missing ContextAttributeInputModule
-            https://issues.apache.org/jira/browse/COCOON-1395
-COCOON-1394 [PATCH] Implementation of PortletRequest#getQueryString()
-            https://issues.apache.org/jira/browse/COCOON-1394
-COCOON-1384 [PATCH] flow redirector should allow explicit 'cocoon:' scheme
-            https://issues.apache.org/jira/browse/COCOON-1384
-COCOON-1370 [PATCH] proxy block can now use JTidy and handle multipart POST
-            https://issues.apache.org/jira/browse/COCOON-1370
-COCOON-1368 [PATCH] HTTPRequestTransformer
-            https://issues.apache.org/jira/browse/COCOON-1368
-COCOON-1362 [PATCH] log4j.xconf should have the same default config as logkit.xconf
-            https://issues.apache.org/jira/browse/COCOON-1362
-COCOON-1360 [patch] client side validation for CForms
-            https://issues.apache.org/jira/browse/COCOON-1360
-COCOON-1345 [PATCH] Extract convertors into their own block
-            https://issues.apache.org/jira/browse/COCOON-1345
-COCOON-1340 [PATCH] lucene block contribution : a AnalyzerManager component
-            https://issues.apache.org/jira/browse/COCOON-1340
-COCOON-1337 [PATCH] Suggestion for widget population
-            https://issues.apache.org/jira/browse/COCOON-1337
-COCOON-1336 [PATCH] PortletWindowAspect: hiding portlet mode icons and new feature "force-sizable"
-            https://issues.apache.org/jira/browse/COCOON-1336
-COCOON-1332 [PATCH] content-length and content-type for portlet ActionRequest
-            https://issues.apache.org/jira/browse/COCOON-1332
-COCOON-1329 [PATCH] Fix for cocoon.jar bundled in ear common for portal.war and portlet.war
-            https://issues.apache.org/jira/browse/COCOON-1329
-COCOON-1325 [PATCH] commons-fileupload based multipart parser
-            https://issues.apache.org/jira/browse/COCOON-1325
-COCOON-1302 [Patch] Word Document Generator
-            https://issues.apache.org/jira/browse/COCOON-1302
-COCOON-1295 ParallelContentAggregator, multithreaded aggregating
-            https://issues.apache.org/jira/browse/COCOON-1295
-COCOON-1260 [PATCH] MultipartParser can now handle multipart/mixed
-            https://issues.apache.org/jira/browse/COCOON-1260
-COCOON-1254 [Patch] OWQLTransformer + RDQLTransformer
-            https://issues.apache.org/jira/browse/COCOON-1254
-COCOON-1249 [Patch] XMLDBSource should accept scheme://user:pass@host:port/path URIs
-            https://issues.apache.org/jira/browse/COCOON-1249
-COCOON-1232 [PATCH] NEW--ModuleDB Action for ORACLE( auto. increment )
-            https://issues.apache.org/jira/browse/COCOON-1232
-COCOON-1203 [PATCH] inserver junit testing
-            https://issues.apache.org/jira/browse/COCOON-1203
-COCOON-1200 [PATCH] XML CSS engine
-            https://issues.apache.org/jira/browse/COCOON-1200
-COCOON-1185 [PATCH] BerkeleyDBStore
-            https://issues.apache.org/jira/browse/COCOON-1185
-COCOON-1147 [PATCH] namespace issues with XMLDBTransformer
-            https://issues.apache.org/jira/browse/COCOON-1147
-COCOON-1125 [PATCH] Updated CastorTransformer + samples
-            https://issues.apache.org/jira/browse/COCOON-1125
-COCOON-1027 [PATCH] CocoonBean add additional features for reprocessing pipelines and interrupt processing
-            https://issues.apache.org/jira/browse/COCOON-1027
-COCOON-996  [PATCH] LuceneIndexContentHandler.java produces CLOBs
-            https://issues.apache.org/jira/browse/COCOON-996
-COCOON-988  [PATCH] StreamGenerator can't handle multipart request parameters correctly
-            https://issues.apache.org/jira/browse/COCOON-988
-COCOON-881  [PATCH] file upload component for usage with flowscript
-            https://issues.apache.org/jira/browse/COCOON-881
-COCOON-871  [PATCH] XML posting from SourceWritingTransformer by using an enhanced HTTPClientSource
-            https://issues.apache.org/jira/browse/COCOON-871
-COCOON-867  [PATCH] wsinclude and htmlinclude transformers
-            https://issues.apache.org/jira/browse/COCOON-867
-COCOON-865  [PATCH] New ResourceLoadAction
-            https://issues.apache.org/jira/browse/COCOON-865
-COCOON-844  [PATCH] adding <wd:on-phase> and moving load() and save() to Form.
-            https://issues.apache.org/jira/browse/COCOON-844
-COCOON-825  [PATCH] Fix Bug: Better handling of CLOB in esql (get-xml) and handling of Oracle 'temporary lobs'
-            https://issues.apache.org/jira/browse/COCOON-825
-COCOON-719  [PATCH] Support for transactions in SQLTransformer
-            https://issues.apache.org/jira/browse/COCOON-719
-COCOON-717  [PATCH] Namespace cleanup in HTMLSerializer
-            https://issues.apache.org/jira/browse/COCOON-717
-COCOON-665  [PATCH] HSSFSerializer Support for FreezePane
-            https://issues.apache.org/jira/browse/COCOON-665
-
-You may edit this subscription at:
-https://issues.apache.org/jira/secure/FilterSubscription!default.jspa?subId=10311&filterId=12310771
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-
-From dev-return-102533-apmail-cocoon-dev-archive=cocoon.apache.org@cocoon.apache.org Sat Sep 18 00:15:21 2010
-Return-Path: <dev-return-102533-apmail-cocoon-dev-archive=cocoon.apache.org@cocoon.apache.org>
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-Message-ID: <27933486.264201284768878915.JavaMail.jira@thor>
-Date: Fri, 17 Sep 2010 20:14:38 -0400 (EDT)
-From: "Florent ANDRE (JIRA)" <jira@apache.org>
-To: dev@cocoon.apache.org
-Subject: [jira] Created: (COCOON-2302) C2.2 : unable to find daisy-..-1.5
- jars in rev 959219
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-C2.2 : unable to find daisy-..-1.5 jars in rev 959219
------------------------------------------------------
-
-                 Key: COCOON-2302
-                 URL: https://issues.apache.org/jira/browse/COCOON-2302
-             Project: Cocoon
-          Issue Type: Bug
-          Components: - Build System: Maven
-    Affects Versions: 2.2-dev (Current SVN)
-            Reporter: Florent ANDRE
-
-
-Hi,
-
-On a fresh co of cocoon trunk give me this errors when mvn install.
-
-Find this repository (http://daisycms.org/maven/maven2/dev/), but there is just 2.5 versions of libs.
-
-Ugrade dependencies to 2.5 or another 1.5 repository ?
-
-Thanks.
-
-INFO] Unable to find resource 'daisy:daisy-util:jar:1.5-dev' in repository gkossakowski-maven2 (http://people.apache.org/~gkossakowski/maven2/repository)
-[INFO] ------------------------------------------------------------------------
-[ERROR] BUILD ERROR
-[INFO] ------------------------------------------------------------------------
-[INFO] Failed to resolve artifact.
-
-Missing:
-----------
-1) daisy:daisy-repository-api:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-repository-api -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-repository-api -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-repository-api:jar:1.5-dev
-
-2) nekodtd:nekodtd:jar:0.1.11
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=nekodtd -DartifactId=nekodtd -Dversion=0.1.11 -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=nekodtd -DartifactId=nekodtd -Dversion=0.1.11 -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) nekodtd:nekodtd:jar:0.1.11
-
-3) daisy:daisy-repository-xmlschema-bindings:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-repository-xmlschema-bindings -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-repository-xmlschema-bindings -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-repository-xmlschema-bindings:jar:1.5-dev
-
-4) daisy:daisy-repository-client-impl:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-repository-client-impl -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-repository-client-impl -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-repository-client-impl:jar:1.5-dev
-
-5) daisy:daisy-repository-common-impl:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-repository-common-impl -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-repository-common-impl -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-repository-common-impl:jar:1.5-dev
-
-6) daisy:daisy-repository-spi:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-repository-spi -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-repository-spi -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-repository-spi:jar:1.5-dev
-
-7) daisy:daisy-jmsclient-api:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-jmsclient-api -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-jmsclient-api -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-jmsclient-api:jar:1.5-dev
-
-8) daisy:daisy-htmlcleaner:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-htmlcleaner -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-htmlcleaner -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-htmlcleaner:jar:1.5-dev
-
-9) daisy:daisy-util:jar:1.5-dev
-
-  Try downloading the file manually from the project website.
-
-  Then, install it using the command:
-      mvn install:install-file -DgroupId=daisy -DartifactId=daisy-util -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file
-
-  Alternatively, if you host your own repository you can deploy the file there:
-      mvn deploy:deploy-file -DgroupId=daisy -DartifactId=daisy-util -Dversion=1.5-dev -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]
-
-  Path to dependency:
-  	1) org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-  	2) daisy:daisy-util:jar:1.5-dev
-
-----------
-9 required artifacts are missing.
-
-for artifact:
-
-org.apache.cocoon:cocoon-sitemaptags2daisy-plugin:maven-plugin:1.0.0-SNAPSHOT
-
-from the specified remote repositories:
-  apache.snapshots (http://people.apache.org/repo/m2-snapshot-repository),
-  central (http://repo1.maven.org/maven2),
-  maven-snapshot (http://snapshots.maven.codehaus.org/maven2/),
-  cocoondev (http://cocoondev.org/repository),
-  gkossakowski-maven2 (http://people.apache.org/~gkossakowski/maven2/repository)
-
-
-
---
-This message is automatically generated by JIRA.
--
-You can reply to this email to add a comment to the issue online.
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/math-scala/pom.xml
----------------------------------------------------------------------
diff --git a/math-scala/pom.xml b/math-scala/pom.xml
deleted file mode 100644
index 6b5f85d..0000000
--- a/math-scala/pom.xml
+++ /dev/null
@@ -1,244 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
- Licensed to the Apache Software Foundation (ASF) under one or more
- contributor license agreements.  See the NOTICE file distributed with
- this work for additional information regarding copyright ownership.
- The ASF licenses this file to You under the Apache License, Version 2.0
- (the "License"); you may not use this file except in compliance with
- the License.  You may obtain a copy of the License at
-
-     http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing, software
- distributed under the License is distributed on an "AS IS" BASIS,
- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- See the License for the specific language governing permissions and
- limitations under the License.
--->
-
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-  <modelVersion>4.0.0</modelVersion>
-
-  <parent>
-    <groupId>org.apache.mahout</groupId>
-    <artifactId>mahout</artifactId>
-    <version>0.13.1-SNAPSHOT</version>
-    <relativePath>../pom.xml</relativePath>
-  </parent>
-
-  <artifactId>mahout-math-scala_${scala.compat.version}</artifactId>
-  <name>Mahout Math Scala bindings</name>
-  <description>High performance scientific and technical computing data structures and methods,
-    mostly based on CERN's
-    Colt Java API
-  </description>
-
-  <packaging>jar</packaging>
-
-  <build>
-
-    <plugins>
-      <!-- create test jar so other modules can reuse the math-scala test utility classes. -->
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-jar-plugin</artifactId>
-        <executions>
-          <execution>
-            <goals>
-              <goal>test-jar</goal>
-            </goals>
-            <phase>package</phase>
-          </execution>
-        </executions>
-      </plugin>
-
-      <plugin>
-        <artifactId>maven-javadoc-plugin</artifactId>
-      </plugin>
-
-      <plugin>
-        <artifactId>maven-source-plugin</artifactId>
-      </plugin>
-
-      <plugin>
-        <groupId>net.alchim31.maven</groupId>
-        <artifactId>scala-maven-plugin</artifactId>
-        <executions>
-          <execution>
-            <id>add-scala-sources</id>
-            <phase>initialize</phase>
-            <goals>
-              <goal>add-source</goal>
-            </goals>
-          </execution>
-          <execution>
-            <id>scala-compile</id>
-            <phase>process-resources</phase>
-            <goals>
-              <goal>compile</goal>
-            </goals>
-          </execution>
-          <execution>
-            <id>scala-test-compile</id>
-            <phase>process-test-resources</phase>
-            <goals>
-              <goal>testCompile</goal>
-            </goals>
-          </execution>
-        </executions>
-      </plugin>
-      <!-- copy jars to top directory, which is MAHOUT_HOME -->
-      <plugin>
-        <artifactId>maven-antrun-plugin</artifactId>
-        <version>1.4</version>
-        <executions>
-          <execution>
-            <id>copy</id>
-            <phase>package</phase>
-            <configuration>
-              <tasks>
-                <copy file="target/mahout-math-scala_${scala.compat.version}-${version}.jar" tofile="../mahout-math-scala_${scala.compat.version}-${version}.jar" />
-              </tasks>
-            </configuration>
-            <goals>
-              <goal>run</goal>
-            </goals>
-          </execution>
-        </executions>
-      </plugin>
-      <!--this is what scalatest recommends to do to enable scala tests -->
-
-      <!-- disable surefire -->
-      <plugin>
-        <groupId>org.apache.maven.plugins</groupId>
-        <artifactId>maven-surefire-plugin</artifactId>
-        <configuration>
-          <skipTests>true</skipTests>
-        </configuration>
-      </plugin>
-      <!-- enable scalatest -->
-      <plugin>
-        <groupId>org.scalatest</groupId>
-        <artifactId>scalatest-maven-plugin</artifactId>
-        <configuration>
-          <argLine>-Xmx4g</argLine>
-        </configuration>
-        <executions>
-          <execution>
-            <id>test</id>
-            <goals>
-              <goal>test</goal>
-            </goals>
-          </execution>
-        </executions>
-      </plugin>
-      <!-- remove jars from top directory on clean -->
-      <plugin>
-        <artifactId>maven-clean-plugin</artifactId>
-        <version>3.0.0</version>
-        <configuration>
-          <filesets>
-            <fileset>
-              <directory>../</directory>
-              <includes>
-                <include>mahout-math-scala*.jar</include>
-              </includes>
-              <followSymlinks>false</followSymlinks>
-            </fileset>
-          </filesets>
-        </configuration>
-      </plugin>
-    </plugins>
-  </build>
-
-  <dependencies>
-
-    <dependency>
-      <groupId>org.apache.mahout</groupId>
-      <artifactId>mahout-math</artifactId>
-    </dependency>
-
-    <dependency>
-      <groupId>com.esotericsoftware.kryo</groupId>
-      <artifactId>kryo</artifactId>
-      <version>2.24.0</version>
-    </dependency>
-
-    <!--  3rd-party -->
-    <dependency>
-      <groupId>log4j</groupId>
-      <artifactId>log4j</artifactId>
-    </dependency>
-
-    <dependency>
-      <groupId>com.github.scopt</groupId>
-      <artifactId>scopt_${scala.compat.version}</artifactId>
-      <version>3.3.0</version>
-    </dependency>
-
-
-    <!-- scala stuff -->
-    <dependency>
-      <groupId>org.scalatest</groupId>
-      <artifactId>scalatest_${scala.compat.version}</artifactId>
-    </dependency>
-
-   <dependency>
-    <groupId>org.scala-lang</groupId>
-    <artifactId>scala-reflect</artifactId>
-    <version>${scala.version}</version>
-  </dependency>
-
-  </dependencies>
-  <profiles>
-    <profile>
-      <id>mahout-release</id>
-      <build>
-        <plugins>
-          <plugin>
-            <groupId>net.alchim31.maven</groupId>
-            <artifactId>scala-maven-plugin</artifactId>
-            <executions>
-              <execution>
-                <id>generate-scaladoc</id>
-                <goals>
-                  <goal>doc</goal>
-                </goals>
-              </execution>
-              <execution>
-                <id>attach-scaladoc-jar</id>
-                <goals>
-                  <goal>doc-jar</goal>
-                </goals>
-              </execution>
-            </executions>
-          </plugin>
-        </plugins>
-      </build>
-    </profile>
-    <profile>
-      <id>travis</id>
-      <build>
-        <plugins>
-          <plugin>
-            <groupId>org.apache.maven.plugins</groupId>
-            <artifactId>maven-surefire-plugin</artifactId>
-            <configuration>
-              <!-- Limit memory for unit tests in Travis -->
-              <argLine>-Xmx3g</argLine>
-            </configuration>
-          </plugin>
-          <plugin>
-            <groupId>org.apache.maven.plugins</groupId>
-            <artifactId>maven-failsafe-plugin</artifactId>
-            <configuration>
-              <!-- Limit memory for integration tests in Travis -->
-              <argLine>-Xmx3g</argLine>
-            </configuration>
-          </plugin>
-        </plugins>
-      </build>
-    </profile>
-  </profiles>
-</project>

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBClassifier.scala
----------------------------------------------------------------------
diff --git a/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBClassifier.scala b/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBClassifier.scala
deleted file mode 100644
index 6f8ecb3..0000000
--- a/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBClassifier.scala
+++ /dev/null
@@ -1,119 +0,0 @@
-/*
- Licensed to the Apache Software Foundation (ASF) under one or more
- contributor license agreements.  See the NOTICE file distributed with
- this work for additional information regarding copyright ownership.
- The ASF licenses this file to You under the Apache License, Version 2.0
- (the "License"); you may not use this file except in compliance with
- the License.  You may obtain a copy of the License at
-
-     http://www.apache.org/licenses/LICENSE-2.0
-
- Unless required by applicable law or agreed to in writing, software
- distributed under the License is distributed on an "AS IS" BASIS,
- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- See the License for the specific language governing permissions and
- limitations under the License.
-*/
-package org.apache.mahout.classifier.naivebayes
-
-import org.apache.mahout.math.Vector
-import scala.collection.JavaConversions._
-
-/**
- * Abstract Classifier base for Complentary and Standard Classifiers
- * @param nbModel a trained NBModel
- */
-abstract class AbstractNBClassifier(nbModel: NBModel) extends java.io.Serializable {
-
-  // Trained Naive Bayes Model
-  val model = nbModel
-
-  /** scoring method for standard and complementary classifiers */
-  protected def getScoreForLabelFeature(label: Int, feature: Int): Double
-
-  /** getter for model */
-  protected def getModel: NBModel= {
-     model
-  }
-
-  /**
-   * Compute the score for a Vector of weighted TF-IDF featured
-   * @param label Label to be scored
-   * @param instance Vector of weights to be calculate score
-   * @return score for this Label
-   */
-  protected def getScoreForLabelInstance(label: Int, instance: Vector): Double = {
-    var result: Double = 0.0
-    for (e <- instance.nonZeroes) {
-      result += e.get * getScoreForLabelFeature(label, e.index)
-    }
-    result
-  }
-
-  /** number of categories the model has been trained on */
-  def numCategories: Int = {
-     model.numLabels
-  }
-
-  /**
-   * get a scoring vector for a vector of TF of TF-IDF weights
-   * @param instance vector of TF of TF-IDF weights to be classified
-   * @return a vector of scores.
-   */
-  def classifyFull(instance: Vector): Vector = {
-    classifyFull(model.createScoringVector, instance)
-  }
-
-  /** helper method for classifyFull(Vector) */
-  def classifyFull(r: Vector, instance: Vector): Vector = {
-    var label: Int = 0
-    for (label <- 0 until model.numLabels) {
-        r.setQuick(label, getScoreForLabelInstance(label, instance))
-      }
-    r
-  }
-}
-
-/**
- * Standard Multinomial Naive Bayes Classifier
- * @param nbModel a trained NBModel
- */
-class StandardNBClassifier(nbModel: NBModel) extends AbstractNBClassifier(nbModel: NBModel) with java.io.Serializable{
-  override def getScoreForLabelFeature(label: Int, feature: Int): Double = {
-    val model: NBModel = getModel
-    StandardNBClassifier.computeWeight(model.weight(label, feature), model.labelWeight(label), model.alphaI, model.numFeatures)
-  }
-}
-
-/** helper object for StandardNBClassifier */
-object StandardNBClassifier extends java.io.Serializable {
-  /** Compute Standard Multinomial Naive Bayes Weights See Rennie et. al. Section 2.1 */
-  def computeWeight(featureLabelWeight: Double, labelWeight: Double, alphaI: Double, numFeatures: Double): Double = {
-    val numerator: Double = featureLabelWeight + alphaI
-    val denominator: Double = labelWeight + alphaI * numFeatures
-    Math.log(numerator / denominator)
-  }
-}
-
-/**
- * Complementary Naive Bayes Classifier
- * @param nbModel a trained NBModel
- */
-class ComplementaryNBClassifier(nbModel: NBModel) extends AbstractNBClassifier(nbModel: NBModel) with java.io.Serializable {
-  override def getScoreForLabelFeature(label: Int, feature: Int): Double = {
-    val model: NBModel = getModel
-    val weight: Double = ComplementaryNBClassifier.computeWeight(model.featureWeight(feature), model.weight(label, feature), model.totalWeightSum, model.labelWeight(label), model.alphaI, model.numFeatures)
-    weight / model.thetaNormalizer(label)
-  }
-}
-
-/** helper object for ComplementaryNBClassifier */
-object ComplementaryNBClassifier extends java.io.Serializable {
-
-  /** Compute Complementary weights See Rennie et. al. Section 3.1 */
-  def computeWeight(featureWeight: Double, featureLabelWeight: Double, totalWeight: Double, labelWeight: Double, alphaI: Double, numFeatures: Double): Double = {
-    val numerator: Double = featureWeight - featureLabelWeight + alphaI
-    val denominator: Double = totalWeight - labelWeight + alphaI * numFeatures
-    -Math.log(numerator / denominator)
-  }
-}

http://git-wip-us.apache.org/repos/asf/mahout/blob/99a5358f/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBModel.scala
----------------------------------------------------------------------
diff --git a/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBModel.scala b/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBModel.scala
deleted file mode 100644
index c4afe4f..0000000
--- a/math-scala/src/main/scala/org/apache/mahout/classifier/naivebayes/NBModel.scala
+++ /dev/null
@@ -1,215 +0,0 @@
-/*
- * Licensed to the Apache Software Foundation (ASF) under one or more
- * contributor license agreements.  See the NOTICE file distributed with
- * this work for additional information regarding copyright ownership.
- * The ASF licenses this file to You under the Apache License, Version 2.0
- * (the "License"); you may not use this file except in compliance with
- * the License.  You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-package org.apache.mahout.classifier.naivebayes
-
-import org.apache.mahout.math._
-
-import org.apache.mahout.math.{drm, scalabindings}
-
-import scalabindings._
-import scalabindings.RLikeOps._
-import drm._
-import scala.language.asInstanceOf
-import scala.collection._
-import JavaConversions._
-
-/**
- *
- * @param weightsPerLabelAndFeature Aggregated matrix of weights of labels x features
- * @param weightsPerFeature Vector of summation of all feature weights.
- * @param weightsPerLabel Vector of summation of all label weights.
- * @param perlabelThetaNormalizer Vector of weight normalizers per label (used only for complemtary models)
- * @param labelIndex HashMap of labels and their corresponding row in the weightMatrix
- * @param alphaI Laplace smoothing factor.
- * @param isComplementary Whether or not this is a complementary model.
- */
-class NBModel(val weightsPerLabelAndFeature: Matrix = null,
-              val weightsPerFeature: Vector = null,
-              val weightsPerLabel: Vector = null,
-              val perlabelThetaNormalizer: Vector = null,
-              val labelIndex: Map[String, Integer] = null,
-              val alphaI: Float = 1.0f,
-              val isComplementary: Boolean= false)  extends java.io.Serializable {
-
-
-  val numFeatures: Double = weightsPerFeature.getNumNondefaultElements
-  val totalWeightSum: Double = weightsPerLabel.zSum
-  val alphaVector: Vector = null
-
-  validate()
-
-  // todo: Maybe it is a good idea to move the dfsWrite and dfsRead out
-  // todo: of the model and into a helper
-
-  // TODO: weightsPerLabelAndFeature, a sparse (numFeatures x numLabels) matrix should fit
-  // TODO: upfront in memory and should not require a DRM decide if we want this to scale out.
-
-
-  /** getter for summed label weights.  Used by legacy classifier */
-  def labelWeight(label: Int): Double = {
-     weightsPerLabel.getQuick(label)
-  }
-
-  /** getter for weight normalizers.  Used by legacy classifier */
-  def thetaNormalizer(label: Int): Double = {
-    perlabelThetaNormalizer.get(label)
-  }
-
-  /** getter for summed feature weights.  Used by legacy classifier */
-  def featureWeight(feature: Int): Double = {
-    weightsPerFeature.getQuick(feature)
-  }
-
-  /** getter for individual aggregated weights.  Used by legacy classifier */
-  def weight(label: Int, feature: Int): Double = {
-    weightsPerLabelAndFeature.getQuick(label, feature)
-  }
-
-  /** getter for a single empty vector of weights */
-  def createScoringVector: Vector = {
-     weightsPerLabel.like
-  }
-
-  /** getter for a the number of labels to consider */
-  def numLabels: Int = {
-     weightsPerLabel.size
-  }
-
-  /**
-   * Write a trained model to the filesystem as a series of DRMs
-   * @param pathToModel Directory to which the model will be written
-   */
-  def dfsWrite(pathToModel: String)(implicit ctx: DistributedContext): Unit = {
-    //todo:  write out as smaller partitions or possibly use reader and writers to
-    //todo:  write something other than a DRM for label Index, is Complementary, alphaI.
-
-    // add a directory to put all of the DRMs in
-    val fullPathToModel = pathToModel + NBModel.modelBaseDirectory
-
-    drmParallelize(weightsPerLabelAndFeature).dfsWrite(fullPathToModel + "/weightsPerLabelAndFeatureDrm.drm")
-    drmParallelize(sparse(weightsPerFeature)).dfsWrite(fullPathToModel + "/weightsPerFeatureDrm.drm")
-    drmParallelize(sparse(weightsPerLabel)).dfsWrite(fullPathToModel + "/weightsPerLabelDrm.drm")
-    drmParallelize(sparse(perlabelThetaNormalizer)).dfsWrite(fullPathToModel + "/perlabelThetaNormalizerDrm.drm")
-    drmParallelize(sparse(svec((0,alphaI)::Nil))).dfsWrite(fullPathToModel + "/alphaIDrm.drm")
-
-    // isComplementry is true if isComplementaryDrm(0,0) == 1 else false
-    val isComplementaryDrm = sparse(0 to 1, 0 to 1)
-    if(isComplementary){
-      isComplementaryDrm(0,0) = 1.0
-    } else {
-      isComplementaryDrm(0,0) = 0.0
-    }
-    drmParallelize(isComplementaryDrm).dfsWrite(fullPathToModel + "/isComplementaryDrm.drm")
-
-    // write the label index as a String-Keyed DRM.
-    val labelIndexDummyDrm = weightsPerLabelAndFeature.like()
-    labelIndexDummyDrm.setRowLabelBindings(labelIndex)
-    // get a reverse map of [Integer, String] and set the value of firsr column of the drm
-    // to the corresponding row number for it's Label (the rows may not be read back in the same order)
-    val revMap = labelIndex.map(x => x._2 -> x._1)
-    for(i <- 0 until labelIndexDummyDrm.numRows() ){
-      labelIndexDummyDrm.set(labelIndex(revMap(i)), 0, i.toDouble)
-    }
-
-    drmParallelizeWithRowLabels(labelIndexDummyDrm).dfsWrite(fullPathToModel + "/labelIndex.drm")
-  }
-
-  /** Model Validation */
-  def validate() {
-    assert(alphaI > 0, "alphaI has to be greater than 0!")
-    assert(numFeatures > 0, "the vocab count has to be greater than 0!")
-    assert(totalWeightSum > 0, "the totalWeightSum has to be greater than 0!")
-    assert(weightsPerLabel != null, "the number of labels has to be defined!")
-    assert(weightsPerLabel.getNumNondefaultElements > 0, "the number of labels has to be greater than 0!")
-    assert(weightsPerFeature != null, "the feature sums have to be defined")
-    assert(weightsPerFeature.getNumNondefaultElements > 0, "the feature sums have to be greater than 0!")
-    if (isComplementary) {
-      assert(perlabelThetaNormalizer != null, "the theta normalizers have to be defined")
-      assert(perlabelThetaNormalizer.getNumNondefaultElements > 0, "the number of theta normalizers has to be greater than 0!")
-      assert(Math.signum(perlabelThetaNormalizer.minValue) == Math.signum(perlabelThetaNormalizer.maxValue), "Theta normalizers do not all have the same sign")
-      assert(perlabelThetaNormalizer.getNumNonZeroElements == perlabelThetaNormalizer.size, "Weight normalizers can not have zero value.")
-    }
-    assert(labelIndex.size == weightsPerLabel.getNumNondefaultElements, "label index must have entries for all labels")
-  }
-}
-
-object NBModel extends java.io.Serializable {
-
-  val modelBaseDirectory = "/naiveBayesModel"
-
-  /**
-   * Read a trained model in from from the filesystem.
-   * @param pathToModel directory from which to read individual model components
-   * @return a valid NBModel
-   */
-  def dfsRead(pathToModel: String)(implicit ctx: DistributedContext): NBModel = {
-    //todo:  Takes forever to read we need a more practical method of writing models. Readers/Writers?
-
-    // read from a base directory for all drms
-    val fullPathToModel = pathToModel + modelBaseDirectory
-
-    val weightsPerFeatureDrm = drmDfsRead(fullPathToModel + "/weightsPerFeatureDrm.drm").checkpoint(CacheHint.MEMORY_ONLY)
-    val weightsPerFeature = weightsPerFeatureDrm.collect(0, ::)
-    weightsPerFeatureDrm.uncache()
-
-    val weightsPerLabelDrm = drmDfsRead(fullPathToModel + "/weightsPerLabelDrm.drm").checkpoint(CacheHint.MEMORY_ONLY)
-    val weightsPerLabel = weightsPerLabelDrm.collect(0, ::)
-    weightsPerLabelDrm.uncache()
-
-    val alphaIDrm = drmDfsRead(fullPathToModel + "/alphaIDrm.drm").checkpoint(CacheHint.MEMORY_ONLY)
-    val alphaI: Float = alphaIDrm.collect(0, 0).toFloat
-    alphaIDrm.uncache()
-
-    // isComplementry is true if isComplementaryDrm(0,0) == 1 else false
-    val isComplementaryDrm = drmDfsRead(fullPathToModel + "/isComplementaryDrm.drm").checkpoint(CacheHint.MEMORY_ONLY)
-    val isComplementary = isComplementaryDrm.collect(0, 0).toInt == 1
-    isComplementaryDrm.uncache()
-
-    var perLabelThetaNormalizer= weightsPerFeature.like()
-    if (isComplementary) {
-      val perLabelThetaNormalizerDrm = drm.drmDfsRead(fullPathToModel + "/perlabelThetaNormalizerDrm.drm")
-                                             .checkpoint(CacheHint.MEMORY_ONLY)
-      perLabelThetaNormalizer = perLabelThetaNormalizerDrm.collect(0, ::)
-    }
-
-    val dummyLabelDrm= drmDfsRead(fullPathToModel + "/labelIndex.drm")
-                         .checkpoint(CacheHint.MEMORY_ONLY)
-    val labelIndexMap:java.util.Map[String, Integer] = dummyLabelDrm.getRowLabelBindings
-    dummyLabelDrm.uncache()
-
-    // map the labels to the corresponding row numbers of weightsPerFeatureDrm (values in dummyLabelDrm)
-    val scalaLabelIndexMap: mutable.Map[String, Integer] =
-      labelIndexMap.map(x => x._1 -> dummyLabelDrm.get(labelIndexMap(x._1), 0)
-        .toInt
-        .asInstanceOf[Integer])
-
-    val weightsPerLabelAndFeatureDrm = drmDfsRead(fullPathToModel + "/weightsPerLabelAndFeatureDrm.drm").checkpoint(CacheHint.MEMORY_ONLY)
-    val weightsPerLabelAndFeature = weightsPerLabelAndFeatureDrm.collect
-    weightsPerLabelAndFeatureDrm.uncache()
-
-    // model validation is triggered automatically by constructor
-    val model: NBModel = new NBModel(weightsPerLabelAndFeature,
-      weightsPerFeature,
-      weightsPerLabel,
-      perLabelThetaNormalizer,
-      scalaLabelIndexMap,
-      alphaI,
-      isComplementary)
-
-    model
-  }
-}


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