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From conflue...@apache.org
Subject [CONF] Apache Lucene Mahout: Mahout on Elastic MapReduce (page edited)
Date Fri, 01 May 2009 18:39:00 GMT
Mahout on Elastic MapReduce (MAHOUT) edited by Stephen Green
      Page: http://cwiki.apache.org/confluence/display/MAHOUT/Mahout+on+Elastic+MapReduce
   Changes: http://cwiki.apache.org/confluence/pages/diffpagesbyversion.action?pageId=116559&originalVersion=5&revisedVersion=6






Content:
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This page details the set of steps that was necessary to get an example of k-Means clustering
running on Amazon's Elastic MapReduce (EMR).  The aim here was simply to get something running,
but it should provide a good head start if you want to run something else.  I started out
on the [QuickStart] page and went from there.  Along the way, I encountered some problems
and posted to the Amazon EMR forums to get some help.  The [resulting thread|http://developer.amazonwebservices.com/connect/thread.jspa?threadID=30945&tstart=15]
might have some useful information if you're having trouble.

h1. Getting Started

   * Get yourself an EMR account.  If you're already using EC2, then you can do this from
[Amazon's AWS Managment Console|https://console.aws.amazon.com/], which has a tab for running
EMR.
   * Get the [ElasticFox|https://addons.mozilla.org/en-US/firefox/addon/11626] and [S3Fox|https://addons.mozilla.org/en-US/firefox/search?q=s3fox&cat=all]
Firefox extensions.  These will make it easy to monitor running EMR instances, upload code
and data, and download results.
   * Download the Ruby command line client for EMR.  You can do things from the GUI, but when
you're in the midst of trying to get something running, the CLI client will make life a lot
easier.
   * Have a look at [Common Problems Running Job Flows|http://developer.amazonwebservices.com/connect/thread.jspa?messageID=124694&#124694]
and [Developing and Debugging Job Flows|http://developer.amazonwebservices.com/connect/message.jspa?messageID=124695#124695]
in the EMR forum at Amazon.  They were tremendously useful.
   * Make sure that you're up to date with the Mahout source.  The fix for [Issue 118|http://issues.apache.org/jira/browse/MAHOUT-118]
is required to get things running when you're sending output to an S3 bucket.
   * Build the Mahout core and examples.

Note that the Hadoop that's running on EMR is a modified version of Hadoop 0.18.3 that includes
some back-ported stuff from later versions of Hadoop.  The EMR GUI in the AWS Management Console
provides a number of examples of using EMR, and you might want to try running one of these
to get started.

One big gotcha that I discovered is that the S3N file system for Hadoop has a couple of weird
cases that boil down to the following advice:  if you're naming a directory in an s3n URI,
make sure that it ends in a slash and you should not try to use a top-level S3 bucket name
as the place where your Mahout output will be going, you should always include a subdirectory.

h1. Uploading Code and Data

I decided that I would use separate S3 buckets for the Mahout code, the input for the clustering
(I used the synthetic control data, you can find it easily from the [QuickStart] page), and
the output of the clustering.  

I used S3Fox to make two buckets: {{mahout-code}} and {{mahout-input}} and then uploaded {{mahout-examples-0.1.job}}
to the {{mahout-code}} bucket.  I copied the {{synthetic_control.data}} file to the {{mahout-input}}
bucket.  You don't actually need to make an output bucket, as the Mahout examples will create
one if the one you specify doesn't exist.

h1. Running k-means Clustering

EMR offers two modes for running MapReduce jobs.  The first is a "streaming" mode where you
provide the source for single-step mapper and reducer functions (you can use languages other
than Java for this).  The second mode is called "Custom Jar" and it gives you full control
over the job steps that will run.  This is the mode that we need to use to run Mahout.  

In order to run in Custom Jar mode, you need to look at the example that you want to run (in
my case, {{org.apache.mahout.clustering.syntheticcontrol.kmeans.Job}}) and figure out the
arguments that you need to provide to the job.  Essentially, you need to know the command
line that you would give to bin/hadoop in order to run the job, including whatever parameters
the job needs to run.  Certainly, you could provide a jar for EMR that has a {{Main-Class}}
attribute and make sure that the default {{main}} for that class will do the right thing,
but that won't work with the default Mahout examples, because they expect the input and output
to be in HDFS and not S3.

h2. Using the GUI

The EMR GUI is an easy way to start up a Custom Jar run, but it doesn't have the full functionality
of the CLI.  Basically, you tell the GUI where in S3 the jar file is using a Hadoop s3n URI
like {{s3n://mahout-code/mahout-examples-0.1.job}}.  The GUI will check and make sure that
the given file exists, which is a nice sanity check.  You can then provide the arguments for
the job just as you would on the command line.  The arguments for the k-means job that I wanted
to run were as follows:

{noformat}
org.apache.mahout.clustering.syntheticcontrol.kmeans.Job 
s3n://mahout-input/synthetic_control.data 
s3n://mahout-output/kmeans/ 
org.apache.mahout.utils.EuclideanDistanceMeasure 80 55 0.5 10
{noformat}

You can see what the configuration screen looks like here: !mahout.png|thumbnail!

The main failing with the GUI mode is that you can only specify a single job to run, and you
can't run another job in the same set of instances.  Recall that on AWS you pay for partial
hours at the hourly rate, so if your job fails in the first 10 seconds, you pay for the full
hour and if you try again, you're going to paying for another hour.

Because of this, I strongly suggest using the CLI once you're minmally familiar with EMR.

h2. Using the CLI

If you're in development mode, and trying things out, EMR allows you to set up a set of instances
and leave them running.  Once you've done this, you can add job steps to the set of instances
as you like.  This solves the "10 second failure" problem that I described above and lets
you get full value for your EMR dollar.  Amazon has pretty good [documentation for the CLI|http://docs.amazonwebservices.com/ElasticMapReduce/latest/DeveloperGuide/index.html?CHAP_RunningaJob.html],
which you'll need to read to figure out how to do things like set up your AWS credentials
for the EMR CLI.

You can start up a job flow that will keep running using an invocation like the following:

{noformat}
./elastic-mapreduce --create --alive \
   --log-uri s3n://mahout-logs/ --key_pair aura \
   --num-instances 4 --name kmeans
{noformat}

Note that I've named the job flow {{kmeans}}, I've told it to use 4 small instances, and I'll
have the logs stored in an S3 bucket at the end of the run.  This call returns the name of
the job flow, and you'll need that for subsequent calls to add steps to the job flow. 

Let's list our job flows:

{noformat}
[stgreen@dhcp-ubur02-74-153 14:16:15 emr]$ ./elastic-mapreduce --list
j-3JB4UF7CQQ025     WAITING        ec2-174-129-90-97.compute-1.amazonaws.com    kmeans
{noformat}

Everything's started up, and it's waiting for us to add a step to the job.  When I started
the job flow, I specified a key pair that I created earlier so that I can log into the master
while the job flow is running:

{noformat}
[stgreen@dhcp-ubur02-74-153 14:14:01 emr]$ ssh hadoop@ec2-174-129-90-97.compute-1.amazonaws.com
Linux domU-12-31-39-00-84-13 2.6.21.7-2.fc8xen #1 SMP Fri Feb 15 12:39:36 EST 2008 i686
--------------------------------------------------------------------------------

Welcome to Amazon Elastic MapReduce running Hadoop 0.18.3 and Debian/Lenny.
 
Hadoop is installed in /home/hadoop. Log files are in /mnt/var/log/hadoop. Check
/mnt/var/log/hadoop/steps for diagnosing step failures.

The Hadoop UI can be accessed via the command: lynx http://localhost:9100/

--------------------------------------------------------------------------------
Last login: Fri May  1 18:12:13 2009 from 192.18.128.5
hadoop@domU-12-31-39-00-84-13:~$ 
{noformat}

Let's add a step to run the same job that I ran via the GUI:

{noformat}
./elastic-mapreduce -j j-3JB4UF7CQQ025 \
   --jar s3n://mahout-code/mahout-examples-0.1.job \
   --main-class org.apache.mahout.clustering.syntheticcontrol.kmeans.Job \
   --arg s3n://mahout-input/synthetic_control.data \
   --arg s3n://mahout-output/kmeans/ \
   --arg org.apache.mahout.utils.EuclideanDistanceMeasure \
   --arg 80 --arg 55 --arg 0.5 --arg 10
{noformat}

When you do this, the job flow goes into the {{RUNNING}} state for a while and then returns
to {{WAITING}} once the step has finished.  You can use the CLI or the GUI to monitor the
step while it runs.  Once you've finished with your job flow, you can shut it down the following
way:

{noformat}
./elastic-mapreduce -j j-3JB4UF7CQQ025 --terminate
{noformat}

and go look in your S3 buckets to find your output and logs (if things didn't go very well!)










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