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From Erick Erickson <erickerick...@gmail.com>
Subject Re: misteriuos nullpointerexception while adding documents
Date Tue, 12 Feb 2019 17:09:17 GMT
bq. I disabled autocommit (both soft and hard), but used to work with a
previous version of the schema.


First, did you _change_ the schema without
1> deleting all the docs in the index
2> reindexing everything

or better, indexing to a new collection and aliasing to it?

If you changed the schema and continued indexing to the
collection _at any time in the past_ you may have
inconsistent merged segments. The only way to fix this
is to re-index, and I strongly recommend to a new
collection.

Second:
do _not_ disable, commits and index for a long time.
1> your tlog will grow forever until you do a hard commit
2> certain internal Solr structures grow until a new searcher
    is opened, either soft commit or hard-commit-with-opensearcher-true

https://lucidworks.com/2013/08/23/understanding-transaction-logs-softcommit-and-commit-in-sorlcloud/

Best,
Erick

On Tue, Feb 12, 2019 at 1:03 AM MUNENDRA S.N <sn.munendra52@gmail.com> wrote:
>
> Are you trying to set some field to null in the request?? Also, is that
> particular field numeric, doc valued enabled and stored set to false??
> Sharing more details would help here, specifically update request and
> schema for those fields.
>
> Regards,
> Munendra S N
>
>
> On Tue, Feb 12, 2019 at 2:24 PM Danilo Tomasoni <tomasoni@cosbi.eu> wrote:
>
> > Hello all,
> >
> > I get this error while uploading my documents with 'set' modifier in
> > json format.
> >
> > My solr version is 7.3.1.
> >
> > I disabled autocommit (both soft and hard), but used to work with a
> > previous version of the schema.
> >
> > Someone have any clue on what's going on here?
> >
> > I can't reproduce the issue indexing locally on another solr 7.3.1
> > instance, I get this error only in the production instance.
> >
> > Thank you
> >
> > Danilo
> >
> >
> > ======== This is the error I get from client ========
> >
> >
> > {
> >    "responseHeader":{
> >      "status":500,
> >      "QTime":33},
> >    "error":{
> >      "trace":"
> >
> > java.lang.NullPointerException
> >      at org.apache.solr.update.UpdateLog.lookup(UpdateLog.java:971)
> >      at
> >
> > org.apache.solr.handler.component.RealTimeGetComponent.getInputDocumentFromTlog(RealTimeGetComponent.java:537)
> >      at
> >
> > org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:617)
> >      at
> >
> > org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:594)
> >      at
> >
> > org.apache.solr.update.processor.DistributedUpdateProcessor.getUpdatedDocument(DistributedUpdateProcessor.java:1330)
> >      at
> >
> > org.apache.solr.update.processor.DistributedUpdateProcessor.versionAdd(DistributedUpdateProcessor.java:1049)
> >      at
> >
> > org.apache.solr.update.processor.DistributedUpdateProcessor.processAdd(DistributedUpdateProcessor.java:633)
> >      at
> >
> > org.apache.solr.update.processor.LogUpdateProcessorFactory$LogUpdateProcessor.processAdd(LogUpdateProcessorFactory.java:103)
> >      at
> >
> > org.apache.solr.update.processor.UpdateRequestProcessor.processAdd(UpdateRequestProcessor.java:55)
> >      at
> >
> > org.apache.solr.update.processor.FieldMutatingUpdateProcessor.processAdd(FieldMutatingUpdateProcessor.java:118)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:501)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >      at
> >
> > org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >      at
> >
> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >      at
> >
> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at
> > org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> > "
> >
> > }
> >
> >
> >   ======= this is the error I see in solr.log ===============
> >
> >
> > 2019-02-12 08:43:01.592 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.p.LogUpdateProcessorFactory [COSBIBioIndex]  webapp=/solr
> > path=/update/json params={}{add=[PUBMEDPMID24951927
> > (1625251880396390400), PUBMEDPMID19328818 (1625251880437284864),
> > PUBMEDPMID24304416 (1625251880442527744), PUBMEDPMID24398789
> > (1625251880446722048), PUBMEDPMID23111281 (1625251880455110656),
> > PUBMEDPMID26933085 (1625251880464547840), PUBMEDPMID18635358
> > (1625251880471887872), PUBMEDPMID26856594 (1625251880472936448),
> > PUBMEDPMID21803289 (1625251880479227904), PUBMEDPMID25722448
> > (1625251880487616512), ... (194 adds)]} 0 5567
> > 2019-02-12 08:43:01.594 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.h.RequestHandlerBase org.eclipse.jetty.io.EofException: Early EOF
> >      at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
> >      at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
> >      at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
> >      at
> >
> > org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
> >      at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
> >      at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
> >      at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
> >      at java.io.InputStreamReader.read(InputStreamReader.java:184)
> >      at org.noggit.JSONParser.fill(JSONParser.java:208)
> >      at org.noggit.JSONParser.getMore(JSONParser.java:215)
> >      at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
> >      at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
> >      at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
> >      at org.noggit.JSONParser.getString(JSONParser.java:1142)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >      at
> >
> > org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >      at
> >
> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >      at
> >
> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> >
> > 2019-02-12 08:43:01.599 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.s.HttpSolrCall null:org.eclipse.jetty.io.EofException: Early EOF
> >      at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
> >      at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
> >      at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
> >      at
> >
> > org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
> >      at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
> >      at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
> >      at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
> >      at java.io.InputStreamReader.read(InputStreamReader.java:184)
> >      at org.noggit.JSONParser.fill(JSONParser.java:208)
> >      at org.noggit.JSONParser.getMore(JSONParser.java:215)
> >      at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
> >      at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
> >      at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
> >      at org.noggit.JSONParser.getString(JSONParser.java:1142)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >      at
> >
> > org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >      at
> >
> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >      at
> >
> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> >
> > 2019-02-12 08:43:01.599 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.c.SolrCore [COSBIBioIndex]  CLOSING SolrCore
> > org.apache.solr.core.SolrCore@44e058fb
> > 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.m.SolrMetricManager Closing metric reporters for
> > registry=solr.core.COSBIBioIndex, tag=1155553531
> > 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.DirectUpdateHandler2 Committing on IndexWriter close.
> > 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.SolrIndexWriter Calling setCommitData with
> > IW:org.apache.solr.update.SolrIndexWriter@13750f6d commitCommandVersion:0
> > 2019-02-12 08:43:02.915 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.DirectUpdateHandler2 Error in final commit
> > java.lang.NoClassDefFoundError:
> > org/apache/lucene/index/BufferedUpdatesStream$ApplyDeletesResult
> >      at
> >
> > org.apache.lucene.index.BufferedUpdatesStream.closeSegmentStates(BufferedUpdatesStream.java:368)
> >      at
> >
> > org.apache.lucene.index.FrozenBufferedUpdates.finishApply(FrozenBufferedUpdates.java:402)
> >      at
> >
> > org.apache.lucene.index.FrozenBufferedUpdates.apply(FrozenBufferedUpdates.java:327)
> >      at
> >
> > org.apache.lucene.index.DocumentsWriter$ResolveUpdatesEvent.process(DocumentsWriter.java:740)
> >      at
> > org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5106)
> >      at
> > org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5096)
> >      at
> >
> > org.apache.lucene.index.IndexWriter.prepareCommitInternal(IndexWriter.java:3258)
> >      at
> > org.apache.lucene.index.IndexWriter.commitInternal(IndexWriter.java:3458)
> >      at org.apache.lucene.index.IndexWriter.commit(IndexWriter.java:3423)
> >      at
> >
> > org.apache.solr.update.DirectUpdateHandler2.closeWriter(DirectUpdateHandler2.java:875)
> >      at
> >
> > org.apache.solr.update.DefaultSolrCoreState.closeIndexWriter(DefaultSolrCoreState.java:105)
> >      at
> >
> > org.apache.solr.update.DefaultSolrCoreState.close(DefaultSolrCoreState.java:402)
> >      at
> >
> > org.apache.solr.update.SolrCoreState.decrefSolrCoreState(SolrCoreState.java:83)
> >      at org.apache.solr.core.SolrCore.close(SolrCore.java:1564)
> >      at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> > Caused by: java.lang.ClassNotFoundException:
> > org.apache.lucene.index.BufferedUpdatesStream$ApplyDeletesResult
> >      at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      at
> >
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      ... 50 more
> > 2019-02-12 08:43:02.920 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.c.SolrCore java.lang.NoClassDefFoundError:
> > org/apache/solr/core/ShutdownAwareDirectory
> >      at
> >
> > org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:298)
> >      at
> >
> > org.apache.solr.core.CachingDirectoryFactory.closeCacheValue(CachingDirectoryFactory.java:264)
> >      at
> >
> > org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:194)
> >      at org.apache.solr.core.SolrCore.close(SolrCore.java:1633)
> >      at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> > Caused by: java.lang.ClassNotFoundException:
> > org.apache.solr.core.ShutdownAwareDirectory
> >      at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      at
> >
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      ... 40 more
> >
> >
> > --
> > Danilo Tomasoni
> > COSBI
> >
> > As for the European General Data Protection Regulation 2016/679 on the
> > protection of natural persons with regard to the processing of personal
> > data, we inform you that all the data we possess are object of treatement
> > in the respect of the normative provided for by the cited GDPR.
> >
> > It is your right to be informed on which of your data are used and how;
> > you may ask for their correction, cancellation or you may oppose to their
> > use by written request sent by recorded delivery to The Microsoft Research
> > – University of Trento Centre for Computational and Systems Biology Scarl,
> > Piazza Manifattura 1, 38068 Rovereto (TN), Italy.
> >
> >

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