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From Michael McCandless <luc...@mikemccandless.com>
Subject Re: Indexer crashes with "hit exception during merge"
Date Fri, 14 Aug 2009 11:50:27 GMT
Can you post the full sources for the test that hits the exception on
your system?

Mike

On Fri, Aug 14, 2009 at 7:36 AM, rishisinghal<singhal.rishi@gmail.com> wrote:
>
> It is reproducible in my system. If the number of files are small I am not
> able to see the crash.
>
>>>can you turn on infoStream on IndexWriter and post the output?
> I am not clear on this. If you are talking of
> writer.setInfoStream(System.out);
> I already have posted the output while raising the issue.
>
>
>>>If CheckIndex succeeds, then I'd compare the output w/ and w/o CheckIndex.
> I am not clear on this too. As I know CheckIndex program has been run after
> I get the error and it shows no issues.
>
> Regards,
> Rishi
>
>
>
> Shai Erera wrote:
>>
>> If it's easily reproducible, can you please provide a test that reproduces
>> it, even if on just your FS? And also, can you turn on infoStream on
>> IndexWriter and post the output?
>>
>> If CheckIndex succeeds, then I'd compare the output w/ and w/o CheckIndex.
>>
>> Shai
>>
>> On Fri, Aug 14, 2009 at 12:17 AM, rishisinghal
>> <singhal.rishi@gmail.com>wrote:
>>
>>>
>>> I am running this on OpenVMS V8.2-1 on IA64. For a small number of files
>>> this
>>> works all fine.
>>>
>>> I checked the resources part and i have enough disk and ram available.
>>>
>>> Regards,
>>> Rishi
>>>
>>>
>>> Michael McCandless-2 wrote:
>>> >
>>> > It's very odd that CheckIndex has no trouble opening the segment's
>>> > files, yet when you run optimize the OS reports a "file not found"
>>> > exception (errno 5).  Something odd is happening at the OS/filesystem
>>> > level.
>>> >
>>> > What OS are you running on?
>>> >
>>> > Can you boil this down to a smallish standalone test that shows the
>>> > problem?
>>> >
>>> > Mike
>>> >
>>> > On Thu, Aug 13, 2009 at 8:21 AM, rishisinghal<singhal.rishi@gmail.com>
>>> > wrote:
>>> >>
>>> >> I tried creating the index in different disks but still i see the
>>> issue
>>> >> :-(
>>> >>
>>> >> I tried to index documents in other disks also and got the same
>>> >> exception.
>>> >>
>>> >> I also tried
>>> >> $ java org.apache.lucene.index.CheckIndex
>>> >> /SYS$SYSDEVICE/RISHI/melon_1600/
>>> >> -segment _61
>>> >> NOTE: testing will be more thorough if you run java with
>>> >> '-ea:org.apache.lucene...', so assertions are enabled
>>> >> Opening index @ /SYS$SYSDEVICE/RISHI/melon_1600/
>>> >> Segments file=segments_1 numSegments=0 version=FORMAT_HAS_PROX [Lucene
>>> >> 2.4]
>>> >>
>>> >> Checking only these segments: _61:
>>> >> No problems were detected with this index.
>>> >>
>>> >> Regards,
>>> >> Rishi
>>> >>
>>> >>
>>> >> Shai Erera wrote:
>>> >>>
>>> >>> I noticed the exception is "Caused by: java.io.FileNotFoundException:
>>> >>> /SYS$SYSDEVICE/RISHI/melon_1600/_61.cfs (i/o error (errno:5))"
>>> >>>
>>> >>> I searched for i/o error (errno:5) and found some information which
>>> >>> associates it w/ a more native IO problem, like corrupt file due
to
>>> >>> system
>>> >>> crash etc.
>>> >>>
>>> >>> Did you experience that? Can you try to create the index somewhere
>>> else,
>>> >>> or
>>> >>> on another drive?
>>> >>>
>>> >>> Shai
>>> >>>
>>> >>> On Thu, Aug 13, 2009 at 3:00 PM, rishisinghal
>>> >>> <singhal.rishi@gmail.com>wrote:
>>> >>>
>>> >>>>
>>> >>>> It is a local file system.
>>> >>>>
>>> >>>> We are using lucene 2.4 and java 1.5
>>> >>>>
>>> >>>> Regards,
>>> >>>> Rishi
>>> >>>>
>>> >>>>
>>> >>>> Shai Erera wrote:
>>> >>>> >
>>> >>>> > Is that a local file system, or a network share?
>>> >>>> >
>>> >>>> > On Thu, Aug 13, 2009 at 1:07 PM, rishisinghal
>>> >>>> > <singhal.rishi@gmail.com>wrote:
>>> >>>> >
>>> >>>> >>
>>> >>>> >> >>Is there any chance that two writers are open
on this
>>> directory?
>>> >>>> >> No, thats not true.
>>> >>>> >>
>>> >>>> >> >>something external to Lucene is removing files
from the
>>> directory.
>>> >>>> >> No this also has rare chances as I am the owner of
these files
>>> and
>>> >>>> other
>>> >>>> >> then me no one can delete the, :-)
>>> >>>> >>
>>> >>>> >> Here are all the files in the index directory:
>>> >>>> >> segments.gen;1      segments_1.;1       segments_2.;1
>>> _0.fdt;1
>>> >>>> >> _0.fdx;1            _37.cfs;1          
_4c.cfs;1
>>> >>>> _61.cfs;1
>>> >>>> >> _9e.cfs;1           _ay.cfs;1           _az.cfs;1
>>> >>>> _b0.cfs;1
>>> >>>> >> _b2.tis;1           _b3.fdt;1           _b4.fdt;1
>>> >>>> >>
>>> >>>> >> I see _37 present.
>>> >>>> >>
>>> >>>> >> Regards,
>>> >>>> >> Rishi
>>> >>>> >>
>>> >>>> >>
>>> >>>> >> Michael McCandless-2 wrote:
>>> >>>> >> >
>>> >>>> >> > Is there any chance that two writers are open
on this
>>> directory?
>>> >>>> Or,
>>> >>>> >> > something external to Lucene is removing files
from the
>>> directory.
>>> >>>> >> >
>>> >>>> >> > It looks like there were at least two missing
files (_37
>>> >>>> >> >
>>> >>>> >> > On Thu, Aug 13, 2009 at 5:19 AM,
>>> >>>> rishisinghal<singhal.rishi@gmail.com
>>> >>>> >
>>> >>>> >> > wrote:
>>> >>>> >> >>
>>> >>>> >> >> Hi,
>>> >>>> >> >>
>>> >>>> >> >> I am trying to index documents and when all
is complete and
>>> >>>> optimize
>>> >>>> >> is
>>> >>>> >> >> called I get
>>> >>>> >> >>
>>> >>>> >> >> IFD [main]: setInfoStream
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> deletionPolicy=org.apache.lucene.index.KeepOnlyLastCommitDeletionPolicy@4fced0
>>> >>>> >> >> IW 0 [main]: setInfoStream:
>>> >>>> >> >>
>>> >>>> >>
>>> >>>> dir=org.apache.lucene.store.FSDirectory@
>>> /SYS$SYSDEVICE/RISHI/melon_1600
>>> >>>> >> >> autoCommit=false mergePolicy=org
>>> >>>> >> >> .apache.lucene.index.LogByteSizeMergePolicy@92cb49
>>> >>>> >> >>
>>> >>>>
>>> mergeScheduler=org.apache.lucene.index.ConcurrentMergeScheduler@6038e4
>>> >>>> >> >> ramBufferS
>>> >>>> >> >> izeMB=16.0 maxBufferedDocs=5 maxBuffereDeleteTerms=-1
>>> >>>> >> >> maxFieldLength=10000
>>> >>>> >> >> index=_37:c465->_0 _4c:c165->_0 _61:c245->_0
_9e:c485->_0
>>> >>>> >> >>  _ay:c225->_0 _az:c5->_0 _b0:c5->_0
>>> >>>> >> >> IW 0 [main]: optimize: index now _37:c465->_0
_4c:c165->_0
>>> >>>> >> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0
>>> >>>> >> >> IW 0 [main]:   flush: segment=null docStoreSegment=null
>>> >>>> >> docStoreOffset=0
>>> >>>> >> >> flushDocs=false flushDeletes=true flushDocStores=false
numD
>>> >>>> >> >> ocs=0 numBufDelTerms=0
>>> >>>> >> >> IW 0 [main]:   index before flush _37:c465->_0
_4c:c165->_0
>>> >>>> >> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0
>>> >>>> >> >> IW 0 [main]: add merge to pendingMerges: _61:c245->_0
>>> >>>> _9e:c485->_0
>>> >>>> >> >> _ay:c225->_0 _az:c5->_0 _b0:c5->_0
[optimize] [total 1
>>> pending]
>>> >>>> >> >> IW 0 [main]: CMS: now merge
>>> >>>> >> >> IW 0 [main]: CMS:   index: _37:c465->_0
_4c:c165->_0
>>> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0
>>> >>>> >> >> IW 0 [main]: CMS:   consider merge _61:c245->_0
_9e:c485->_0
>>> >>>> >> _ay:c225->_0
>>> >>>> >> >> _az:c5->_0 _b0:c5->_0 into _b5 [optimize]
>>> >>>> >> >> IW 0 [main]: CMS:     launch new thread
[Lucene Merge Thread
>>> #73]
>>> >>>> >> >> IW 0 [main]: CMS:   no more merges pending;
now return
>>> >>>> >> >> IW 0 [Lucene Merge Thread #73]: CMS:   merge
thread: start
>>> >>>> >> >> IW 0 [Lucene Merge Thread #73]: now merge
>>> >>>> >> >>  merge=_61:c245->_0 _9e:c485->_0 _ay:c225->_0
_az:c5->_0
>>> >>>> _b0:c5->_0
>>> >>>> >> into
>>> >>>> >> >> _b5 [optimize]
>>> >>>> >> >>  merge=org.apache.lucene.index.MergePolicy$OneMerge@3725db
>>> >>>> >> >>  index=_37:c465->_0 _4c:c165->_0 _61:c245->_0
_9e:c485->_0
>>> >>>> >> _ay:c225->_0
>>> >>>> >> >> _az:c5->_0 _b0:c5->_0
>>> >>>> >> >> IW 0 [Lucene Merge Thread #73]: merging _61:c245->_0
>>> _9e:c485->_0
>>> >>>> >> >> _ay:c225->_0 _az:c5->_0 _b0:c5->_0
into _b5 [optimize]
>>> >>>> >> >> IW 0 [Lucene Merge Thread #73]: hit exception
during merge
>>> >>>> >> >> Exception in thread "Lucene Merge Thread #73"
>>> >>>> >> >> org.apache.lucene.index.MergePolicy$MergeException:
>>> >>>> >> >> java.io.FileNotFoundException: /SY
>>> >>>> >> >> S$SYSDEVICE/RISHI/melon_1600/_61.cfs (i/o
error (errno:5))
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.ConcurrentMergeScheduler.handleMergeException(ConcurrentMergeScheduler.java:309)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.ConcurrentMergeScheduler$MergeThread.run(ConcurrentMergeScheduler.java:286)
>>> >>>> >> >> Caused by: java.io.FileNotFoundException:
>>> >>>> >> >> /SYS$SYSDEVICE/RISHI/melon_1600/_61.cfs (i/o
error (errno:5))
>>> >>>> >> >>        at java.io.RandomAccessFile.open(Native
Method)
>>> >>>> >> >>        at
>>> >>>> java.io.RandomAccessFile.<init>(RandomAccessFile.java:231)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.store.FSDirectory$FSIndexInput$Descriptor.<init>(FSDirectory.java:552)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.store.FSDirectory$FSIndexInput.<init>(FSDirectory.java:582)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> org.apache.lucene.store.FSDirectory.openInput(FSDirectory.java:488)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.CompoundFileReader.<init>(CompoundFileReader.java:70)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.SegmentReader.initialize(SegmentReader.java:321)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.SegmentReader.get(SegmentReader.java:306)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.SegmentReader.get(SegmentReader.java:260)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>>
>>> org.apache.lucene.index.IndexWriter.mergeMiddle(IndexWriter.java:4220)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.IndexWriter.merge(IndexWriter.java:3884)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.ConcurrentMergeScheduler.doMerge(ConcurrentMergeScheduler.java:205)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.ConcurrentMergeScheduler$MergeThread.run(ConcurrentMergeScheduler.java:260)
>>> >>>> >> >> Aug 13, 2009 2:40:56 PM
>>> >>>> org.hp.openvms.lucene.index.FileIndexerJSP
>>> >>>> >> >> jspMain
>>> >>>> >> >> SEVERE: Indexing not completebackground merge
hit exception:
>>> >>>> >> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0 into _b5 [
>>> >>>> >> >> optimize]
>>> >>>> >> >> java.io.IOException: background merge hit
exception:
>>> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0 into _b5
>>> >>>> [optimize
>>> >>>> >> >> ]
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> org.apache.lucene.index.IndexWriter.optimize(IndexWriter.java:2273)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> org.apache.lucene.index.IndexWriter.optimize(IndexWriter.java:2218)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> org.apache.lucene.index.IndexWriter.optimize(IndexWriter.java:2198)
>>> >>>> >> >>        at
>>> >>>> org.hp.openvms.lucene.index.FileIndexerJSP.jspMain(Unknown
>>> >>>> >> >> Source)
>>> >>>> >> >>        at org.hp.openvms.lucene.index.FileIndexer.main(Unknown
>>> >>>> Source)
>>> >>>> >> >> Caused by: java.io.FileNotFoundException:
>>> >>>> >> >> /SYS$SYSDEVICE/RISHI/melon_1600/_61.cfs (i/o
error (errno:5))
>>> >>>> >> >>        at java.io.RandomAccessFile.open(Native
Method)
>>> >>>> >> >>        at
>>> >>>> java.io.RandomAccessFile.<init>(RandomAccessFile.java:231)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.store.FSDirectory$FSIndexInput$Descriptor.<init>(FSDirectory.java:552)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.store.FSDirectory$FSIndexInput.<init>(FSDirectory.java:582)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> org.apache.lucene.store.FSDirectory.openInput(FSDirectory.java:488)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.CompoundFileReader.<init>(CompoundFileReader.java:70)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.SegmentReader.initialize(SegmentReader.java:321)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.SegmentReader.get(SegmentReader.java:306)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.SegmentReader.get(SegmentReader.java:260)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>>
>>> org.apache.lucene.index.IndexWriter.mergeMiddle(IndexWriter.java:4220)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.IndexWriter.merge(IndexWriter.java:3884)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.ConcurrentMergeScheduler.doMerge(ConcurrentMergeScheduler.java:205)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.ConcurrentMergeScheduler$MergeThread.run(ConcurrentMergeScheduler.java:260)
>>> >>>> >> >> IW 0 [main]: now flush at close
>>> >>>> >> >> IW 0 [main]:   flush: segment=null docStoreSegment=null
>>> >>>> >> docStoreOffset=0
>>> >>>> >> >> flushDocs=false flushDeletes=true flushDocStores=false
numD
>>> >>>> >> >> ocs=0 numBufDelTerms=0
>>> >>>> >> >> IW 0 [main]:   index before flush _37:c465->_0
_4c:c165->_0
>>> >>>> >> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0
>>> >>>> >> >> IW 0 [main]: CMS: now merge
>>> >>>> >> >> IW 0 [main]: CMS:   index: _37:c465->_0
_4c:c165->_0
>>> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0
>>> >>>> >> >> IW 0 [main]: CMS:   no more merges pending;
now return
>>> >>>> >> >> IW 0 [main]: now call final commit()
>>> >>>> >> >> IW 0 [main]: startCommit(): start sizeInBytes=0
>>> >>>> >> >> IW 0 [main]: startCommit index=_37:c465->_0
_4c:c165->_0
>>> >>>> _61:c245->_0
>>> >>>> >> >> _9e:c485->_0 _ay:c225->_0 _az:c5->_0
_b0:c5->_0 changeCount=11
>>> >>>> >> >> 95
>>> >>>> >> >> IW 0 [main]: now sync _37.cfs
>>> >>>> >> >> IW 0 [main]: hit exception while closing
>>> >>>> >> >> Exception in thread "main" java.io.FileNotFoundException:
>>> >>>> >> >> /SYS$SYSDEVICE/RISHI/melon_1600/_37.cfs (i/o
error (errno:5))
>>> >>>> >> >>        at java.io.RandomAccessFile.open(Native
Method)
>>> >>>> >> >>        at
>>> >>>> java.io.RandomAccessFile.<init>(RandomAccessFile.java:231)
>>> >>>> >> >>        at
>>> >>>> >> org.apache.lucene.store.FSDirectory.sync(FSDirectory.java:456)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>>
>>> org.apache.lucene.index.IndexWriter.startCommit(IndexWriter.java:4590)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.IndexWriter.commit(IndexWriter.java:3369)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> org.apache.lucene.index.IndexWriter.closeInternal(IndexWriter.java:1654)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.IndexWriter.close(IndexWriter.java:1602)
>>> >>>> >> >>        at
>>> >>>> >> >>
>>> org.apache.lucene.index.IndexWriter.close(IndexWriter.java:1578)
>>> >>>> >> >>        at
>>> >>>> org.hp.openvms.lucene.index.FileIndexerJSP.jspMain(Unknown
>>> >>>> >> >> Source)
>>> >>>> >> >>        at org.hp.openvms.lucene.index.FileIndexer.main(Unknown
>>> >>>> Source)
>>> >>>> >> >>
>>> >>>> >> >>
>>> >>>> >> >>
>>> >>>> >> >> I have setMaxBufferedDocs = 5 and setMergeFactor=5.
I was
>>> trying
>>> >>>> >> >> different
>>> >>>> >> >> combinations of these to see if that helps
but was
>>> unsuccessful.
>>> >>>> >> >>
>>> >>>> >> >>
>>> >>>> >> >> Regards,
>>> >>>> >> >> Rishi
>>> >>>> >> >> --
>>> >>>> >> >> View this message in context:
>>> >>>> >> >>
>>> >>>> >>
>>> >>>>
>>> http://www.nabble.com/Indexer-crashes-with-%22hit-exception-during-merge%22-tp24951667p24951667.html
>>> >>>> >> >> Sent from the Lucene - Java Users mailing
list archive at
>>> >>>> Nabble.com.
>>> >>>> >> >>
>>> >>>> >> >>
>>> >>>> >> >>
>>> >>>>
>>> ---------------------------------------------------------------------
>>> >>>> >> >> To unsubscribe, e-mail:
>>> java-user-unsubscribe@lucene.apache.org
>>> >>>> >> >> For additional commands, e-mail:
>>> java-user-help@lucene.apache.org
>>> >>>> >> >>
>>> >>>> >> >>
>>> >>>> >> >
>>> >>>> >> >
>>> >>>>
>>> ---------------------------------------------------------------------
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>>> >>>> >> > For additional commands, e-mail:
>>> java-user-help@lucene.apache.org
>>> >>>> >> >
>>> >>>> >> >
>>> >>>> >> >
>>> >>>> >>
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>>> >>>> >>
>>> >>>>
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at
>>> >>>> Nabble.com.
>>> >>>> >>
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>>> Nabble.com.
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>>> >>>
>>> >>>
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>>> >>
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>>> >>
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>>> >>
>>> >>
>>> >
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>>> >
>>> >
>>> >
>>>
>>> --
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>>>
>>
>>
>
> --
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