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From Matei Zaharia <ma...@eecs.berkeley.edu>
Subject Re: About Running Spark on a cluster with mesos Re: WELCOME to mesos-dev@incubator.apache.org
Date Mon, 22 Aug 2011 23:13:14 GMT
This probably means that your task crashed. Take a look at the logs Mesos collects for your
task, which will be in MESOS_HOME/work/slave-id/framework-id/attempt-id/stdout and stderr.

Sometimes this happens because spark-env.sh isn't configured on all the nodes to contain SCALA_HOME,
JAVA_HOME and MESOS_HOME. It can also happen because your code is not available on all the
machines and you get a ClassNotFoundError. You can either copy the code to the same place
everywhere and put that in the SPARK_CLASSPATH variable in spark-env.sh, or  package your
code into a JAR and use the "jars" parameter to SparkContext to pass it (in which case Spark
will copy it to all the nodes).

Matei

On Aug 22, 2011, at 4:04 PM, Joe Xie wrote:

> Btw, I checkout my webui for master, it indicates "No offers are active"
> under "Resource Offers" while I have two machines as slave, so there might
> be problem with my configuration.
> Best,
> JOE
> 
> On 8/22/11 3:59 PM, "Joe Xie" <zhiyong@fb.com> wrote:
> 
>> Thank you Matei,
>> 
>> it's running for me with Spark 0.3 + pre-protobuf, and I'm testing with
>> provided example "run spark.examples.SparkPi mesos://1@10.30.95.184:5050
>> 3". However, it seems I keep losing TID after starting the task, and then
>> job aborted with 4 tries. It might be the problem on my side too, did this
>> happen before? I could go for trying masters for spark + mesos.
>> 11/08/22 15:48:27 INFO spark.SimpleJob: Lost TID 13 (task 0:2)
>> 11/08/22 15:48:27 ERROR spark.SimpleJob: Task 0:2 failed more than 4
>> times; aborting job
>> 11/08/22 15:48:28 INFO spark.MesosScheduler: Ignoring update from TID 12
>> because its job is gone
>> 11/08/22 15:48:28 INFO spark.MesosScheduler: Ignoring update from TID 14
>> because its job is gone
>> 
>> Thanks!
>> Joe
>> 
>> 
>> 
>> On 8/22/11 3:38 PM, "Joe Xie" <zhiyong@fb.com> wrote:
>> 
>>> Thank you Matei! I can go for Spark 0.3 + pre-protobuf. I understand
>>> there
>>> might be lots of new updates on the master branch. Is there any
>>> significant difference in current master with Spark 0.3 + pre-protobuf? I
>>> could also try to keep a separate branch with stable masters if that's
>>> the
>>> case. 
>>> Best,
>>> Joe
>>> On 8/22/11 3:21 PM, "Matei Zaharia" <matei@eecs.berkeley.edu> wrote:
>>> 
>>>> If you want the most stable versions right now, I recommend Spark 0.3
>>>> (download it from the website or the 0.3-scala-2.9 tag in Git) and
>>>> pre-protobuf Mesos. However, the current master Spark + master Mesos
>>>> should also work OK; it's just that further commits may break things
>>>> temporarily.
>>>> 
>>>> Matei
>>>> 
>>>> On Aug 22, 2011, at 3:17 PM, Joe Xie wrote:
>>>> 
>>>>> Hi Matei,
>>>>> Thanks for your feedback. I bet I'm using the master brach of Spark
>>>>> and
>>>>> pre-protobuf version of Mesos. Do you mean I should go for Spark
>>>>> (master)
>>>>> + protobuf (master).  Let's me know the most stable combination of
>>>>> braches
>>>>> from Spark and pre-protobuf, I can try them out.
>>>>> 
>>>>> Best,
>>>>> Joe
>>>>> 
>>>>> 
>>>>> On 8/22/11 3:09 PM, "Matei Zaharia" <matei@eecs.berkeley.edu> wrote:
>>>>> 
>>>>>> Are you using the master branch of Spark, or one of the releases
>>>>>> (e.g.
>>>>>> 0.3)? The releases work with the pre-protobuf version of Mesos but
>>>>>> the
>>>>>> master branch of Spark actually requires the master branch of Mesos
>>>>>> now.
>>>>>> That could cause the kind of error you're seeing.
>>>>>> 
>>>>>> Matei
>>>>>> 
>>>>>> On Aug 22, 2011, at 3:06 PM, Joe Xie wrote:
>>>>>> 
>>>>>>> Sorry this should have been sent to user mail list.
>>>>>>> 
>>>>>>> On 8/22/11 2:19 PM, "Joe Xie" <zhiyong@fb.com> wrote:
>>>>>>> 
>>>>>>>> Hi there:
>>>>>>>> 
>>>>>>>> I has build and installed mesos (pre-protobuf branch for
spark) and
>>>>>>>> spark,
>>>>>>>> and deployed them to a cluster. However, I have following
error
>>>>>>>> when
>>>>>>>> I
>>>>>>>> run
>>>>>>>> spark task on the mesos URL of my master, the spark task
runs fine
>>>>>>>> in
>>>>>>>> local mode. Any suggestion or help? Thanks a lot!
>>>>>>>> Joe
>>>>>>>> 
>>>>>>>> My os: CentOS 5.2
>>>>>>>> Python: 2.6
>>>>>>>> Gcc: 4.2.1
>>>>>>>> Swig:1.3.40
>>>>>>>> ./run spark.examples.SparkPi mesos://1@xx.xx.xx.xx:5050 
1
>>>>>>>> 11/08/22 13:31:11 INFO spark.CacheTrackerActor: Registered
actor on
>>>>>>>> port
>>>>>>>> 50501
>>>>>>>> 11/08/22 13:31:11 INFO spark.MapOutputTrackerActor: Registered
>>>>>>>> actor
>>>>>>>> on
>>>>>>>> port 50501
>>>>>>>> 11/08/22 13:31:11 INFO spark.SparkContext: Starting job...
>>>>>>>> 11/08/22 13:31:11 INFO spark.CacheTracker: Registering RDD
ID 0
>>>>>>>> with
>>>>>>>> cache
>>>>>>>> 11/08/22 13:31:11 INFO spark.CacheTrackerActor: Registering
RDD 0
>>>>>>>> with
>>>>>>>> 1
>>>>>>>> partitions
>>>>>>>> 11/08/22 13:31:11 INFO spark.CacheTrackerActor: Asked for
current
>>>>>>>> cache
>>>>>>>> locations
>>>>>>>> 11/08/22 13:31:12 INFO spark.MesosScheduler: Final stage:
Stage 0
>>>>>>>> 11/08/22 13:31:12 INFO spark.MesosScheduler: Parents of final
>>>>>>>> stage:
>>>>>>>> List()
>>>>>>>> 11/08/22 13:31:12 INFO spark.MesosScheduler: Missing parents:
>>>>>>>> List()
>>>>>>>> 11/08/22 13:31:12 INFO spark.MesosScheduler: Submitting Stage
0,
>>>>>>>> which
>>>>>>>> has
>>>>>>>> no missing parents
>>>>>>>> 11/08/22 13:31:12 INFO spark.MesosScheduler: Got a job with
1 tasks
>>>>>>>> Exception in thread "Spark scheduler"
>>>>>>>> java.lang.UnsatisfiedLinkError:
>>>>>>>> org.apache.mesos.MesosSchedulerDriver.initialize()V
>>>>>>>> 	at org.apache.mesos.MesosSchedulerDriver.initialize(Native
Method)
>>>>>>>> 	at
>>>>>>>> 
>>>>>>>> 
>>>>>>>> org.apache.mesos.MesosSchedulerDriver.<init>(MesosSchedulerDriver.ja
>>>>>>>> v
>>>>>>>> a
>>>>>>>> :4
>>>>>>>> 2)
>>>>>>>> 	at
>>>>>>>> 
>>>>>>>> 
>>>>>>>> org.apache.mesos.MesosSchedulerDriver.<init>(MesosSchedulerDriver.ja
>>>>>>>> v
>>>>>>>> a
>>>>>>>> :4
>>>>>>>> 6)
>>>>>>>> 	at spark.MesosScheduler$$anon$1.run(MesosScheduler.scala:94)
>>>>>>>> 
>>>>>>>> Sent to wrong address previously
>>>>>>>> 
>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> On 8/21/11 4:30 PM, "mesos-dev-help@incubator.apache.org"
>>>>>>>>> <mesos-dev-help@incubator.apache.org> wrote:
>>>>>>>>> 
>>>>>>>>>> Hi! This is the ezmlm program. I'm managing the
>>>>>>>>>> mesos-dev@incubator.apache.org mailing list.
>>>>>>>>>> 
>>>>>>>>>> I'm working for my owner, who can be reached
>>>>>>>>>> at mesos-dev-owner@incubator.apache.org.
>>>>>>>>>> 
>>>>>>>>>> Acknowledgment: I have added the address
>>>>>>>>>> 
>>>>>>>>>> zhiyong@fb.com
>>>>>>>>>> 
>>>>>>>>>> to the mesos-dev mailing list.
>>>>>>>>>> 
>>>>>>>>>> Welcome to mesos-dev@incubator.apache.org!
>>>>>>>>>> 
>>>>>>>>>> Please save this message so that you know the address
you are
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or change
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>>>>>>>>>> 
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---
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Please
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per request),
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my owner
>>>>>>>>>> is
>>>>>>>>>> a
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>>>>>>>>>> 
>>>>>>>>>> --- Enclosed is a copy of the request I received.
>>>>>>>>>> 
>>>>>>>>>> Return-Path: <zhiyong@fb.com>
>>>>>>>>>> Received: (qmail 39962 invoked by uid 99); 21 Aug
2011 23:30:07
>>>>>>>>>> -0000
>>>>>>>>>> Received: from nike.apache.org (HELO nike.apache.org)
>>>>>>>>>> (192.87.106.230)
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Aug 2011
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>>>>>>>>>> designates
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>>>>>>>>>> 
>>>>>>>>>> <mesos-dev-sc.1313966607.anahdnaofbfbnfgijcem-zhiyong=fb.com@incub
>>>>>>>>>> a
>>>>>>>>>> t
>>>>>>>>>> or
>>>>>>>>>> .a
>>>>>>>>>> p
>>>>>>>>>> a
>>>>>>>>>> che.org>; Sun, 21 Aug 2011 16:29:18 -0700
>>>>>>>>>> Received: from mail.thefacebook.com (corpout1.snc1.tfbnw.net
>>>>>>>>>> [66.220.144.38])
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>>>>>>>>>> 	(version=TLSv1/SSLv3 cipher=AES128-SHA bits=128
verify=NOT)
>>>>>>>>>> 	for 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> <mesos-dev-sc.1313966607.anahdnaofbfbnfgijcem-zhiyong=fb.com@incub
>>>>>>>>>> a
>>>>>>>>>> t
>>>>>>>>>> or
>>>>>>>>>> .a
>>>>>>>>>> p
>>>>>>>>>> a
>>>>>>>>>> che.org>; Sun, 21 Aug 2011 16:29:18 -0700
>>>>>>>>>> Received: from SC-MBX01-5.TheFacebook.com
>>>>>>>>>> ([fe80::f05e:c7f1:c7dd:e640])
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mapi id
>>>>>>>>>> 14.01.0289.001;
>>>>>>>>>> Sun,
>>>>>>>>>> 21 Aug 2011 16:29:14 -0700
>>>>>>>>>> From: Joe Xie <zhiyong@fb.com>
>>>>>>>>>> To:   
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> "mesos-dev-sc.1313966607.anahdnaofbfbnfgijcem-zhiyong=fb.com@incub
>>>>>>>>>> a
>>>>>>>>>> t
>>>>>>>>>> or
>>>>>>>>>> .a
>>>>>>>>>> p
>>>>>>>>>> a
>>>>>>>>>> che.org"
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 	<mesos-dev-sc.1313966607.anahdnaofbfbnfgijcem-zhiyong=fb.com@incu
>>>>>>>>>> b
>>>>>>>>>> a
>>>>>>>>>> to
>>>>>>>>>> r.
>>>>>>>>>> a
>>>>>>>>>> p
>>>>>>>>>> ache.org>
>>>>>>>>>> Subject: Re: confirm subscribe to mesos-dev@incubator.apache.org
>>>>>>>>>> Thread-Topic: confirm subscribe to mesos-dev@incubator.apache.org
>>>>>>>>>> Thread-Index: AQHMYFO/ABVA64TXDkGEVkIetlsT6JUn85UA
>>>>>>>>>> Date: Sun, 21 Aug 2011 23:29:13 +0000
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>>>>>>>>>> In-Reply-To: <1313966607.19992.ezmlm@incubator.apache.org>
>>>>>>>>>> Accept-Language: en-US
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>>>>>>>>>> X-Virus-Checked: Checked by ClamAV on apache.org
>>>>>>>>>> 
>>>>>>>>>> Thanks!
>>>>>>>>>> Joe
>>>>>>>>>> On 8/21/11 3:43 PM, "mesos-dev-help@incubator.apache.org"
>>>>>>>>>> <mesos-dev-help@incubator.apache.org> wrote:
>>>>>>>>>> 
>>>>>>>>>>> Hi! This is the ezmlm program. I'm managing the
>>>>>>>>>>> mesos-dev@incubator.apache.org mailing list.
>>>>>>>>>>> 
>>>>>>>>>>> I'm working for my owner, who can be reached
>>>>>>>>>>> at mesos-dev-owner@incubator.apache.org.
>>>>>>>>>>> 
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>>>>>>>>>>> zhiyong@fb.com
>>>>>>>>>>> 
>>>>>>>>>>> added to the mesos-dev mailing list, please send
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>>>>>>>>>>> 
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>>>>>>>>>>> u
>>>>>>>>>>> b
>>>>>>>>>>> at
>>>>>>>>>>> or
>>>>>>>>>>> .
>>>>>>>>>>> a
>>>>>>>>>>> p=
>>>>>>>>>> ac
>>>>>>>>>>> he.org
>>>>>>>>>>> 
>>>>>>>>>>> Usually, this happens when you just hit the "reply"
button.
>>>>>>>>>>> If this does not work, simply copy the address
and paste it into
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>>>>>>>>>>> 
>>>>>>>>>>> or click here:
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>>>>>>>>>>> om
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>>>>>>>>>>> n
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>>>>>>>>>>> u=
>>>>>>>>>> ba
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>>>>>>>>>>> 
>>>>>>>>>>> This confirmation serves two purposes. First,
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>>>>>>>>>>> Please note that ALL Apache dev- and user- mailing
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>>>>>>>>>>> If you're not sure whether or not the policy
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>>>>>>>>>>> 
>>>>>>>>>>> 
>>>>>>>>>>> --- Administrative commands for the mesos-dev
list ---
>>>>>>>>>>> 
>>>>>>>>>>> I can handle administrative requests automatically.
Please
>>>>>>>>>>> do not send them to the list address! Instead,
send
>>>>>>>>>>> your message to the correct command address:
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>>>>>>>>>>> To subscribe to the list, send a message to:
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>>>>>>>>>>> To remove your address from the list, send a
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>>>>>>>>>>> 
>>>>>>>>>>> Send mail to the following for info and FAQ for
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>>>>>>>>>>> Similar addresses exist for the digest list:
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>>>>>>>>>>> <mesos-dev-digest-unsubscribe@incubator.apache.org>
>>>>>>>>>>> 
>>>>>>>>>>> To get messages 123 through 145 (a maximum of
100 per request),
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>>>>>>>>>>> 
>>>>>>>>>>> To get an index with subject and author for messages
123-456 ,
>>>>>>>>>>> mail:
>>>>>>>>>>> <mesos-dev-index.123_456@incubator.apache.org>
>>>>>>>>>>> 
>>>>>>>>>>> They are always returned as sets of 100, max
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>>>>>>>>>>> so you'll actually get 100-499.
>>>>>>>>>>> 
>>>>>>>>>>> To receive all messages with the same subject
as message 12345,
>>>>>>>>>>> send a short message to:
>>>>>>>>>>> <mesos-dev-thread.12345@incubator.apache.org>
>>>>>>>>>>> 
>>>>>>>>>>> The messages should contain one line or word
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>>>>>>>>>>> being
>>>>>>>>>>> treated as sp@m, but I will ignore their content.
>>>>>>>>>>> Only the ADDRESS you send to is important.
>>>>>>>>>>> 
>>>>>>>>>>> You can start a subscription for an alternate
address,
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>>>>>>>>>>> When
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your
>>>>>>>>>>> subscription.
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be patient, my
>>>>>>>>>>> owner
>>>>>>>>>>> is a
>>>>>>>>>>> lot slower than I am ;-)
>>>>>>>>>>> 
>>>>>>>>>>> --- Enclosed is a copy of the request I received.
>>>>>>>>>>> 
>>>>>>>>>>> Return-Path: <zhiyong@fb.com>
>>>>>>>>>>> Received: (qmail 19986 invoked by uid 99); 21
Aug 2011 22:43:26
>>>>>>>>>>> -0000
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>>>>>>>>>>> 14.01.0289.001;
>>>>>>>>>>> Sun,
>>>>>>>>>>> 21 Aug 2011 15:42:53 -0700
>>>>>>>>>>> From: Joe Xie <zhiyong@fb.com>
>>>>>>>>>>> To: "mesos-dev-subscribe@incubator.apache.org"
>>>>>>>>>>> 	<mesos-dev-subscribe@incubator.apache.org>
>>>>>>>>>>> Subject: can i join this
>>>>>>>>>>> Thread-Topic: can i join this
>>>>>>>>>>> Thread-Index: AQHMYFOp36obbNljKE2n3mexQg9sQQ=3D=3D
>>>>>>>>>>> Date: Sun, 21 Aug 2011 22:42:53 +0000
>>>>>>>>>>> Message-ID: <CA76D7F7.4256%zhiyong@fb.com>
>>>>>>>>>>> Accept-Language: en-US
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>>>>>>>>>>> MIME-Version: 1.0
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>>>>>>>>>>> Content-Type: text/plain; charset=3D"us-ascii"
>>>>>>>>>>> Content-Transfer-Encoding: quoted-printable
>>>>>>>>>>> 
>>>>>>>>>>> Best,
>>>>>>>>>>> Joe
>>>>>>>>>>> 
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>>>>>>>>>>> Content-ID: <F6BAF69B18270946ABCC53E8D258B722@fb.com>
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>>>>>>>>>>> <head>
>>>>>>>>>>> <meta http-equiv=3D3D"Content-Type" content=3D3D"text/html;
>>>>>>>>>>> charset=3D3Dus-ascii"=3D
>>>>>>>>>>>> 
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>>>>>>>>>>> space;
>>>>>>>>>>> -webkit-lin=3D
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0); font-size:
>>>>>>>>>>> 14px;
>>>>>>>>>>> font-fami=3D
>>>>>>>>>>> ly: Calibri, sans-serif; ">
>>>>>>>>>>> <div>Best,</div>
>>>>>>>>>>> <div>Joe</div>
>>>>>>>>>>> </body>
>>>>>>>>>>> </html>
>>>>>>>>>>> 
>>>>>>>>>>> --_000_CA76D7F74256zhiyongfbcom_--
>>>>>>>>>> 
>>>>>>>>> 
>>>>>>>> 
>>>>>>> 
>>>>>> 
>>>>> 
>>>> 
>>> 
>> 
> 


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