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From edwardy...@apache.org
Subject svn commit: r813233 [1/7] - in /incubator/hama/branches: ./ hama-0.19/ hama-0.19/bin/ hama-0.19/conf/ hama-0.19/lib/ hama-0.19/lib/findbugs/ hama-0.19/lib/findbugs/plugin/ hama-0.19/lib/jetty-ext/ hama-0.19/src/ hama-0.19/src/docs/ hama-0.19/src/docs/s...
Date Thu, 10 Sep 2009 05:32:59 GMT
Author: edwardyoon
Date: Thu Sep 10 05:32:52 2009
New Revision: 813233

URL: http://svn.apache.org/viewvc?rev=813233&view=rev
Log:
Create hama-0.19 branch.

Added:
    incubator/hama/branches/hama-0.19/
    incubator/hama/branches/hama-0.19/CHANGES.txt
    incubator/hama/branches/hama-0.19/LICENSE.txt
    incubator/hama/branches/hama-0.19/NOTICE.txt
    incubator/hama/branches/hama-0.19/bin/
    incubator/hama/branches/hama-0.19/bin/hama   (with props)
    incubator/hama/branches/hama-0.19/bin/hama-config.sh
    incubator/hama/branches/hama-0.19/build.xml
    incubator/hama/branches/hama-0.19/conf/
    incubator/hama/branches/hama-0.19/conf/findbugs-exclude-filter.xml
    incubator/hama/branches/hama-0.19/conf/hama-env.sh
    incubator/hama/branches/hama-0.19/conf/hama-site.xml
    incubator/hama/branches/hama-0.19/conf/log4j.properties
    incubator/hama/branches/hama-0.19/lib/
    incubator/hama/branches/hama-0.19/lib/commons-cli-2.0-SNAPSHOT.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/commons-httpclient-3.0.1.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/commons-logging-1.0.4.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/commons-logging-api-1.0.4.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/commons-math-1.1.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/
    incubator/hama/branches/hama-0.19/lib/findbugs/annotations.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/ant.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/asm-3.0.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/asm-analysis-3.0.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/asm-commons-3.0.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/asm-tree-3.0.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/asm-util-3.0.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/asm-xml-3.0.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/bcel.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/buggy.icns   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/dom4j-full.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/findbugs-ant.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/findbugs.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/findbugsGUI.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/jsr305.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/findbugs/plugin/
    incubator/hama/branches/hama-0.19/lib/findbugs/plugin/coreplugin.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/hadoop-0.19.0-core.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/hadoop-0.19.0-test.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/hbase-0.19.0-test.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/hbase-0.19.0.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/javacc.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/jetty-5.1.4.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/jetty-ext/
    incubator/hama/branches/hama-0.19/lib/jetty-ext/commons-el.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/jetty-ext/jasper-compiler.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/jetty-ext/jasper-runtime.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/jetty-ext/jsp-api.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/junit-3.8.1.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/log4j-1.2.13.jar   (with props)
    incubator/hama/branches/hama-0.19/lib/servlet-api.jar   (with props)
    incubator/hama/branches/hama-0.19/src/
    incubator/hama/branches/hama-0.19/src/docs/
    incubator/hama/branches/hama-0.19/src/docs/forrest.properties
    incubator/hama/branches/hama-0.19/src/docs/src/
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/classes/
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/classes/CatalogManager.properties
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/developers.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/getting_started.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/index.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/irc_channel.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/issue_tracking.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/mailing_lists.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/privacy_policy.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/site.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/tabs.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/content/xdocs/who_we_are.xml
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/MapReduce.png   (with props)
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/apache-incubator-hama-white.png   (with props)
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/apache-incubator-hama.png   (with props)
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/block.png   (with props)
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/favicon.ico
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/hama_logo.png   (with props)
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/resources/images/hama_paint_logo.png   (with props)
    incubator/hama/branches/hama-0.19/src/docs/src/documentation/skinconf.xml
    incubator/hama/branches/hama-0.19/src/docs/status.xml
    incubator/hama/branches/hama-0.19/src/examples/
    incubator/hama/branches/hama-0.19/src/examples/org/
    incubator/hama/branches/hama-0.19/src/examples/org/apache/
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/AbstractExample.java
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/ExampleDriver.java
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/FileMatrixBlockMult.java
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/MatrixAddition.java
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/MatrixMultiplication.java
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/MatrixNorm.java
    incubator/hama/branches/hama-0.19/src/examples/org/apache/hama/examples/RandomMatrix.java
    incubator/hama/branches/hama-0.19/src/java/
    incubator/hama/branches/hama-0.19/src/java/org/
    incubator/hama/branches/hama-0.19/src/java/org/apache/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/AbstractMatrix.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/AbstractVector.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/Constants.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/DenseMatrix.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/DenseVector.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/HamaAdmin.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/HamaAdminImpl.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/HamaConfiguration.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/Matrix.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/SparseMatrix.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/SparseVector.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/SubMatrix.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/Vector.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/BlockMultiplyMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/BlockMultiplyReduce.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/DenseMatrixVectorMultMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/DenseMatrixVectorMultReduce.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/JacobiEigenValue.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/MatrixNormMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/MatrixNormMapRed.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/MatrixNormReduce.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/RowCyclicAdditionMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/RowCyclicAdditionReduce.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/SparseMatrixVectorMultMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/SparseMatrixVectorMultReduce.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/TransposeMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/TransposeReduce.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/algebra/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/graph/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/graph/Graph.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/graph/SparseGraph.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/graph/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/io/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/io/BlockID.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/io/BlockWritable.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/io/DoubleEntry.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/io/Pair.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/io/VectorUpdate.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/io/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/BlockInputFormat.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/BlockOutputFormat.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/CollectBlocksMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/CollectBlocksMapReduceBase.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/CollectBlocksMapper.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/CollectBlocksReducer.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/DummyMapper.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/HTableInputFormatBase.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/HTableRecordReaderBase.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/RandomMatrixMap.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/RandomMatrixReduce.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/VectorInputFormat.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/VectorOutputFormat.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/mapred/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/HamaShell.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/HamaShellEnv.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/HamaShellParser.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/AlgebraOpException.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/AlgebraOperation.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/AlgebraOperator.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/EvalExpression.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/HamaExpression.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/HamaOperation.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/LoadOperation.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/RandMatrixOperation.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/SaveExpression.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/execution/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/expression/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/expression/HamaExpressionParser.jjt
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/expression/grammar
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/expression/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/script/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/script/HamaScriptParser.jj
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/shell/parser/script/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/sparse/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/sparse/package.html
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/util/
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/util/BytesUtil.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/util/JobManager.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/util/RandomVariable.java
    incubator/hama/branches/hama-0.19/src/java/org/apache/hama/util/package.html
    incubator/hama/branches/hama-0.19/src/java/overview.html
    incubator/hama/branches/hama-0.19/src/test/
    incubator/hama/branches/hama-0.19/src/test/org/
    incubator/hama/branches/hama-0.19/src/test/org/apache/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/HCluster.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/MatrixTestCommon.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/TestDenseMatrix.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/TestDenseVector.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/TestMatrixVectorMult.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/TestSingularValueDecomposition.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/TestSparseMatrix.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/TestSparseVector.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/examples/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/examples/TestFileMatrixBlockMult.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/graph/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/graph/TestGraph.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/io/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/io/TestBlockID.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/mapred/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/mapred/TestBlockMatrixMapReduce.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/mapred/TestRandomMatrixMapReduce.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/shell/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/shell/parser/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/shell/parser/expression/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/shell/parser/expression/TestHamaExpressionParser.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/util/
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/util/TestNumeric.java
    incubator/hama/branches/hama-0.19/src/test/org/apache/hama/util/TestRandomVariable.java
Modified:
    incubator/hama/branches/   (props changed)

Propchange: incubator/hama/branches/
------------------------------------------------------------------------------
--- svn:ignore (added)
+++ svn:ignore Thu Sep 10 05:32:52 2009
@@ -0,0 +1 @@
+.project

Added: incubator/hama/branches/hama-0.19/CHANGES.txt
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/CHANGES.txt?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/CHANGES.txt (added)
+++ incubator/hama/branches/hama-0.19/CHANGES.txt Thu Sep 10 05:32:52 2009
@@ -0,0 +1,144 @@
+Hama Change Log
+
+Trunk (unreleased changes)
+
+  NEW FEATURES
+  
+    HAMA-185: Finds the eigenvalues and eigenvectors 
+              associated with the symmetric matrix A (samuel)
+    HAMA-171: Find the maximum absolute row sum using MapReduce (edwardyoon)
+    HAMA-174: Compute the transpose of a matrix (edwardyoon)
+    HAMA-162: Add Graph using Sparse Matrix (edwardyoon)
+    HAMA-151: Add multiplication example of file matrices (edwardyoon)
+    HAMA-145: Add privacy policy page (edwardyoon)
+    HAMA-83: 2D sqaure blocking for dense matrix multiplication (edwardyoon)
+    HAMA-104: Add getNumMap/reduceTasks to HamaConfiguration (edwardyoon)
+    HAMA-92: Add subMatrix() to Matrix (edwardyoon)
+    HAMA-84: Add a writable comparable for BlockID (edwardyoon) 
+    HAMA-81: Add subVector(int i0, int i1) to Vector (edwardyoon)
+    Hama-80: Add identity(int m, int n) 
+               which returns identity matrix (edwardyoon) 
+    HAMA-62: Hama Shell Implementation (samuel via edwardyoon)
+    HAMA-61: Load / save matrices from HTable (edwardyoon)
+    HAMA-51: Add get/setRowAttribute() method (edwardyoon)
+    HAMA-13: Matrix multiplication (edwardyoon)
+    HAMA-48: Add getColumn(int column) method 
+               which returns column vector (edwardyoon)
+    HAMA-49: Add iterator() method to vector (edwardyoon)
+    HAMA-43: Color Hama Logo (Morakot via chanwit)
+    HAMA-37: Add forrest build to Hudson patch build script (edwardyoon)
+    HAMA-34: Hudson/Jira Intergration (edwardyoon)
+    HAMA-36: Add svn information to website (edwardyoon)
+    HAMA-33: Add set() method (edwardyoon)
+    HAMA-30: Add scaling method to Vector (edwardyoon)
+    HAMA-25: Add matrix addition example (edwardyoon)
+    HAMA-23: Add Hama configuration files (edwardyoon)
+    HAMA-6: Add a 'who we are' page (edwardyoon)
+    HAMA-7: Add some information for a new comer (edwardyoon)
+    HAMA-1: Create the Hama web site (edwardyoon via Ian Holsman)
+    HAMA-2: The intial donation of Hama from the google project (edwardyoon)
+
+  IMPROVEMENTS
+
+    HAMA-189: Update website (edwardyoon)
+    HAMA-187: Add matrix subtraction test case (edwardyoon)
+    HAMA-186: Add density option for random matrix (edwardyoon)
+    HAMA-171: Implementation of Matrix.Norm (samuel)
+    HAMA-178: Add example of norm (edwardyoon)
+    HAMA-158: Implementation of random sparse matrix (edwardyoon)
+    HAMA-164: Example for C = Alpha*B + A (edwardyoon)
+    HAMA-154: Combine multi-mapreduce jobs into a single mapreduce job 
+                while computing (samuel via edwardyoon)
+    HAMA-152: Replace MapWritable to hadoop.io.MapWritable (edwardyoon)
+    HAMA-109: Implement add(double alpha, Matrix B) (edwardyoon)
+    HAMA-150: Refactor blockingMapRed (edwardyoon)
+    HAMA-148: Implement of set(double alpha, Matrix B) (edwardyoon)
+    HAMA-100: Implement of set(Matrix B) (edwardyoon)
+    HAMA-144: GetProgress during MR over a matrix (samuel)
+    HAMA-129: Improving speed of matrix multiplication (edwardyoon)
+    HAMA-142: Trunk doesn't work for large matrices (edwardyoon)
+    HAMA-143: Improve of random_mapred() (edwardyoon)
+    HAMA-138: To order, left pad with zeroes to integer key (edwardyoon)
+    HAMA-135, HAMA-137: Refactor mapred, I/O package (edwardyoon)
+    HAMA-134: We don't need to fill C with zeros (edwardyoon)
+    HAMA-131: Add argument for the number of blocks (edwardyoon)
+    HAMA-113: Random matrix generator on map/reduce (edwardyoon)
+    HAMA-118: Add getting started page link (edwardyoon)
+    HAMA-117: Move bytesToSubMatrix/subMatrixToBytes method 
+                to submatrix class from BytesUtil (edwardyoon)
+    HAMA-114: Remove unwanted code (edwardyoon)
+    HAMA-107: Blocking job should be a map/reduce job (samuel via edwardyoon)
+    HAMA-99: Implement setColumn(int column, Vector vector) (edwardyoon)
+    HAMA-108: Implement add(int i, int j, double value) (edwardyoon)
+    HAMA-103: Reduce an rows of intermediate 
+                to improve the multiplication performance (edwardyoon)
+    HAMA-88: DenseMatrix.close should not delete the table 
+               that are aliased in HamaAdmin. (samuel via edwardyoon)
+    HAMA-89: Exception Handling of a ParseException (samuel via edwardyoon)
+    HAMA-77: clear the matrices in hbase after 
+               quiting the shell (samuel via edwardyoon)
+    HAMA-28: Implement Vector.add() method (edwardyoon)
+    HAMA-78: Separate Interface and Implementation for HamaAdmin (edwardyoon)
+    HAMA-76: Remove load() since it duplicated with constructor (edwardyoon)
+    HAMA-74: set the number of map/reduce task 
+               on the shell (samuel via edwardyoon)
+    HAMA-73: Add setNumMap/ReduceTasks() to HamaConfiguration (edwardyoon)
+    HAMA-60: Add an arguments for handle parallel degree
+               to MatrixAddition (edwardyoon)
+    HAMA-68: Shell parser JUnit test cases (samuel via edwardyoon)
+    HAMA-65: Remove the information of an inactive committers (edwardyoon) 
+    HAMA-58: Remove duplicated code (edwardyoon)
+    HAMA-56: Add setRow(int row, Vector vector) method to matrix (edwardyoon)
+    HAMA-39: IO operations should throws an IOException (edwardyoon)
+    HAMA-52: Fixture setup (edwardyoon)
+    HAMA-42: Replace ImmutableBytesWritable to IntWritable (edwardyoon)
+    HAMA-44: Remove findbugs warnings (edwardyoon)
+    HAMA-40: Rename MatrixInterface to Matrix (edwardyoon)
+    HAMA-14: Using Java 6 (edwardyoon)
+    HAMA-22: Add IRC channel information to website (edwardyoon)
+    HAMA-41: Add some tests (edwardyoon)
+    HAMA-38: Remove AbstractBase and make a new NumericUtil (edwardyoon)
+    HAMA-20: Adding license header to a whole code base
+    HAMA-31: Refactor VectorWritable (edwardyoon)
+    HAMA-29: Replace Matrix(Conf, Text) to Matrix(Conf, String) (edwardyoon)
+    HAMA-27: Replace table.get(Text, Text) 
+               to table.get(String, String) (edwardyoon)
+    HAMA-12: Matrix interface re-arrangement (edwardyoon)
+    HAMA-21: Implement get(int index) method (edwardyoon)
+    HAMA-19: Remove vector-norms enum to interface 
+               from implementation (edwardyoon)
+    HAMA-17: Vector to Writable conversion (edwardyoon)
+    HAMA-15: Logo Alignment (edwardyoon) 
+    HAMA-10: Refactor the mapred package 
+               for the latest version of dependencies (edwardyoon)  
+    HAMA-9: Upgrade dependencies (edwardyoon)
+
+  BUG FIXES
+
+    HAMA-190: Bug in Matrix-Vector multiplication (edwardyoon)
+    HAMA-183: When we construct the matrix, 
+                dimensions should be defined. (edwardyoon)
+    HAMA-172: Vector.add(Vector v) throw the Index out of bounds 
+                exception when they are different (edwardyoon)
+    HAMA-169: Vector's first location bug fixed,
+              getNormInf() and getNorm2Robust() are implemented (edwardyoon)
+    HAMA-155: When out of index, should throw exception (edwardyoon)
+    HAMA-147: Fix typos (edwardyoon)
+    HAMA-140: In subMatrix(), Scanner should be closed (edwardyoon)
+    HAMA-120: remove findbugs warning in shell package (samuel via edwardyoon)
+    HAMA-130: Computing Block's range will miss some cell during blocking
+              (samuel)
+    HAMA-126: In random_mapred, (m) should be (m-1) 
+                since start from 0. (edwardyoon)
+    HAMA-116: ArrayIndexOutOfBoundsException at BlockingMapRed (samuel)
+    HAMA-112: DenseMatrix.get(i, j) should returns zero 
+                when entry is null (edwardyoon)
+    HAMA-106: SubMatrix should be able to get row, column size (edwardyoon)
+    HAMA-98: change '~=' operation to use `echo $f | grep 'examples$'` 
+               (samuel via edwardyoon)
+    HAMA-64: Bytes and Double convert (edwardyoon)
+    HAMA-55: Write dimension attributes when job completed (edwardyoon)
+    HAMA-54: Split doesn't split by map task num (edwardyoon)
+    HAMA-53: NullPointerException on distributed cluster (edwardyoon)
+    HAMA-26: hama-formatter.xml should be removed (edwardyoon)  
+    HAMA-25: Vector.get() returns double (edwardyoon)

Added: incubator/hama/branches/hama-0.19/LICENSE.txt
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/LICENSE.txt?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/LICENSE.txt (added)
+++ incubator/hama/branches/hama-0.19/LICENSE.txt Thu Sep 10 05:32:52 2009
@@ -0,0 +1,202 @@
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
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+      "License" shall mean the terms and conditions for use, reproduction,
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+      of this License, Derivative Works shall not include works that remain
+      separable from, or merely link (or bind by name) to the interfaces of,
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+      "Contribution" shall mean any work of authorship, including
+      the original version of the Work and any modifications or additions
+      to that Work or Derivative Works thereof, that is intentionally
+      submitted to Licensor for inclusion in the Work by the copyright owner
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+      designated in writing by the copyright owner as "Not a Contribution."
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+      "Contributor" shall mean Licensor and any individual or Legal Entity
+      on behalf of whom a Contribution has been received by Licensor and
+      subsequently incorporated within the Work.
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+   2. Grant of Copyright License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
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+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      (except as stated in this section) patent license to make, have made,
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+      institute patent litigation against any entity (including a
+      cross-claim or counterclaim in a lawsuit) alleging that the Work
+      or a Contribution incorporated within the Work constitutes direct
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+
+   4. Redistribution. You may reproduce and distribute copies of the
+      Work or Derivative Works thereof in any medium, with or without
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+      meet the following conditions:
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+      (a) You must give any other recipients of the Work or
+          Derivative Works a copy of this License; and
+
+      (b) You must cause any modified files to carry prominent notices
+          stating that You changed the files; and
+
+      (c) You must retain, in the Source form of any Derivative Works
+          that You distribute, all copyright, patent, trademark, and
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+      (d) If the Work includes a "NOTICE" text file as part of its
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+          of the NOTICE file are for informational purposes only and
+          do not modify the License. You may add Your own attribution
+          notices within Derivative Works that You distribute, alongside
+          or as an addendum to the NOTICE text from the Work, provided
+          that such additional attribution notices cannot be construed
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+
+      You may add Your own copyright statement to Your modifications and
+      may provide additional or different license terms and conditions
+      for use, reproduction, or distribution of Your modifications, or
+      for any such Derivative Works as a whole, provided Your use,
+      reproduction, and distribution of the Work otherwise complies with
+      the conditions stated in this License.
+
+   5. Submission of Contributions. Unless You explicitly state otherwise,
+      any Contribution intentionally submitted for inclusion in the Work
+      by You to the Licensor shall be under the terms and conditions of
+      this License, without any additional terms or conditions.
+      Notwithstanding the above, nothing herein shall supersede or modify
+      the terms of any separate license agreement you may have executed
+      with Licensor regarding such Contributions.
+
+   6. Trademarks. This License does not grant permission to use the trade
+      names, trademarks, service marks, or product names of the Licensor,
+      except as required for reasonable and customary use in describing the
+      origin of the Work and reproducing the content of the NOTICE file.
+
+   7. Disclaimer of Warranty. Unless required by applicable law or
+      agreed to in writing, Licensor provides the Work (and each
+      Contributor provides its Contributions) on an "AS IS" BASIS,
+      WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+      implied, including, without limitation, any warranties or conditions
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+      PARTICULAR PURPOSE. You are solely responsible for determining the
+      appropriateness of using or redistributing the Work and assume any
+      risks associated with Your exercise of permissions under this License.
+
+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
+      incidental, or consequential damages of any character arising as a
+      result of this License or out of the use or inability to use the
+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
+      other commercial damages or losses), even if such Contributor
+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Additional Liability. While redistributing
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+      on Your own behalf and on Your sole responsibility, not on behalf
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+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
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Added: incubator/hama/branches/hama-0.19/NOTICE.txt
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/NOTICE.txt?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/NOTICE.txt (added)
+++ incubator/hama/branches/hama-0.19/NOTICE.txt Thu Sep 10 05:32:52 2009
@@ -0,0 +1,2 @@
+This product includes software developed by The Apache Software
+Foundation (http://www.apache.org/).

Added: incubator/hama/branches/hama-0.19/bin/hama
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/bin/hama?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/bin/hama (added)
+++ incubator/hama/branches/hama-0.19/bin/hama Thu Sep 10 05:32:52 2009
@@ -0,0 +1,230 @@
+#! /usr/bin/env bash
+#
+#/**
+# * Copyright 2007 The Apache Software Foundation
+# *
+# * Licensed to the Apache Software Foundation (ASF) under one
+# * or more contributor license agreements.  See the NOTICE file
+# * distributed with this work for additional information
+# * regarding copyright ownership.  The ASF licenses this file
+# * to you under the Apache License, Version 2.0 (the
+# * "License"); you may not use this file except in compliance
+# * with the License.  You may obtain a copy of the License at
+# *
+# *     http://www.apache.org/licenses/LICENSE-2.0
+# *
+# * Unless required by applicable law or agreed to in writing, software
+# * distributed under the License is distributed on an "AS IS" BASIS,
+# * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# * See the License for the specific language governing permissions and
+# * limitations under the License.
+# */
+# 
+# The hama command script.  Based on the hbase command script putting
+# in hama classes, libs and configurations ahead of hbase's.
+#
+# TODO: Narrow the amount of duplicated code.
+#
+# Environment Variables:
+#
+#   JAVA_HOME        The java implementation to use.  Overrides JAVA_HOME.
+#
+#   HAMA_CLASSPATH   Extra Java CLASSPATH entries.
+#
+#   HAMA_HEAPSIZE    The maximum amount of heap to use, in MB. 
+#                    Default is 1000.
+#
+#   HAMA_CONF_DIR    Alternate conf dir. Default is ${HAMA_HOME}/conf.
+#   
+#   HAMA_JARS        Additional jars to be included for task execution.
+#
+#   HAMA_ROOT_LOGGER The root appender. Default is INFO,console
+#
+bin=`dirname "$0"`
+bin=`cd "$bin"; pwd`
+
+# This will set HAMA_HOME, etc.
+. "$bin"/hama-config.sh
+
+cygwin=false
+case "`uname`" in
+CYGWIN*) cygwin=true;;
+esac
+
+# if no args specified, show usage
+if [ $# = 0 ]; then
+  echo "Usage: hama <command>"
+  echo "where <command> is one of:"
+  echo "  shell            run the HAMA shell"
+  echo "  examples         run the HAMA examples"
+  echo " or"
+  echo "  CLASSNAME        run the class named CLASSNAME"
+  echo "Most commands print help when invoked w/o parameters."
+  exit 1
+fi
+
+# get arguments
+COMMAND=$1
+shift
+
+# Source the hama-env.sh.  Will have JAVA_HOME defined.
+if [ -f "${HAMA_CONF_DIR}/hama-env.sh" ]; then
+  . "${HAMA_CONF_DIR}/hama-env.sh"
+fi
+
+# some Java parameters
+if [ "$JAVA_HOME" != "" ]; then
+  #echo "run java in $JAVA_HOME"
+  JAVA_HOME=$JAVA_HOME
+fi
+  
+if [ "$JAVA_HOME" = "" ]; then
+  echo "Error: JAVA_HOME is not set."
+  exit 1
+fi
+
+JAVA=$JAVA_HOME/bin/java
+JAVA_HEAP_MAX=-Xmx1000m 
+
+# check envvars which might override default args
+if [ "$HAMA_HEAPSIZE" != "" ]; then
+  #echo "run with heapsize $HAMA_HEAPSIZE"
+  JAVA_HEAP_MAX="-Xmx""$HAMA_HEAPSIZE""m"
+  #echo $JAVA_HEAP_MAX
+fi
+
+# so that filenames w/ spaces are handled correctly in loops below
+IFS=
+
+# CLASSPATH initially contains $HAMA_CONF_DIR
+CLASSPATH="${HAMA_CONF_DIR}"
+
+
+CLASSPATH=${CLASSPATH}:$JAVA_HOME/lib/tools.jar
+
+# for developers, add hama classes to CLASSPATH
+if [ -d "$HAMA_HOME/build/classes" ]; then
+  CLASSPATH=${CLASSPATH}:$HAMA_HOME/build/classes
+fi
+if [ -d "$HAMA_HOME/build/test" ]; then
+  CLASSPATH=${CLASSPATH}:$HAMA_HOME/build/test
+fi
+if [ -d "$HAMA_HOME/build/examples" ]; then
+  CLASSPATH=${CLASSPATH}:$HAMA_HOME/build
+fi
+
+# for releases, add hama to CLASSPATH
+for f in $HAMA_HOME/hama*.jar; do
+  if [ -f $f ]; then
+    CLASSPATH=${CLASSPATH}:$f;
+  fi
+  if [[ `echo $f | grep 'examples.jar$'` ]]; then
+    HAMA_EXAMPLES_JAR=$f;
+  else
+    if [[ `echo $f | grep 'test.jar$'` ]]; then
+      HAMA_TEST_JAR=$f;
+    else
+      if [[ `echo $f | grep 'hama*'` ]]; then
+        HAMA_JAR=$f;
+      fi
+    fi
+  fi
+done
+
+# Add libs to CLASSPATH
+for f in $HAMA_HOME/lib/*.jar; do
+  CLASSPATH=${CLASSPATH}:$f;
+  if [[ `echo $f | grep 'hbase*'` ]]; then
+    if [ "$HAMA_JARS" == "" ] ; then
+      HAMA_JARS=$f;
+    else
+      HAMA_JARS=${HAMA_JARS},$f;
+    fi
+  fi
+done
+
+for f in $HAMA_HOME/lib/jetty-ext/*.jar; do
+  CLASSPATH=${CLASSPATH}:$f;
+done
+
+for f in $HAMA_HOME/lib/findbugs/*.jar; do
+  CLASSPATH=${CLASSPATH}:$f;
+done
+
+for f in $HAMA_HOME/lib/findbugs/plugin/*.jar; do
+  CLASSPATH=${CLASSPATH}:$f;
+done
+
+# add user-specified CLASSPATH last
+if [ "$HAMA_CLASSPATH" != "" ]; then
+  CLASSPATH=${CLASSPATH}:${HAMA_CLASSPATH}
+fi
+
+# default log directory & file
+if [ "$HAMA_LOG_DIR" = "" ]; then
+  HAMA_LOG_DIR="$HAMA_HOME/logs"
+fi
+if [ "$HAMA_LOGFILE" = "" ]; then
+  HAMA_LOGFILE='hama.log'
+fi
+
+# cygwin path translation
+if $cygwin; then
+  CLASSPATH=`cygpath -p -w "$CLASSPATH"`
+  HAMA_HOME=`cygpath -d "$HAMA_HOME"`
+  HAMA_LOG_DIR=`cygpath -d "$HAMA_LOG_DIR"`
+fi
+
+# cygwin path translation
+if $cygwin; then
+  JAVA_LIBRARY_PATH=`cygpath -p "$JAVA_LIBRARY_PATH"`
+fi
+ 
+# restore ordinary behaviour
+unset IFS
+
+# figure out which class to run
+if [ "$COMMAND" = "shell" ] ; then
+  if [ "$HAMA_JAR" == "" ] ; then
+    echo 'Can not find the hama jar. Please check that if it is in $HAMA_HOME.'
+    exit -1
+  else
+    if [ "$HAMA_JARS" == "" ] ; then
+      echo 'Hama shell to be excuted needs the hbase & hama jar. Please check that if it is in $HAMA_HOME/lib'
+      exit -1
+    else
+      CLASS="org.apache.hadoop.mapred.JobShell -libjars $HAMA_JARS,$HAMA_JAR $HAMA_JAR" 
+    fi
+  fi
+elif [ "$COMMAND" = "examples" ] ; then
+  if [ "$HAMA_EXAMPLES_JAR" == "" ] ; then
+    echo 'Can not find the hama examples jar. Please check that if it is in $HAMA_HOME.'
+    exit -1
+  else
+    if [ "$HAMA_JARS" == "" ] ; then
+      echo 'Hama examples to be excuted needs the hbase & hama jar. Please check that if it is in $HAMA_HOME/lib'
+      exit -1
+    else
+      CLASS="org.apache.hadoop.mapred.JobShell -libjars $HAMA_JARS,$HAMA_JAR $HAMA_EXAMPLES_JAR" 
+    fi
+  fi
+else
+  CLASS=$COMMAND
+fi
+
+# Have JVM dump heap if we run out of memory.  Files will be 'launch directory'
+# and are named like the following: java_pid21612.hprof. Apparently it doesn't
+# 'cost' to have this flag enabled. Its a 1.6 flag only. See:
+# http://blogs.sun.com/alanb/entry/outofmemoryerror_looks_a_bit_better 
+HAMA_OPTS="$HAMA_OPTS -XX:+HeapDumpOnOutOfMemoryError"
+HAMA_OPTS="$HAMA_OPTS -Dhama.log.dir=$HAMA_LOG_DIR"
+HAMA_OPTS="$HAMA_OPTS -Dhama.log.file=$HAMA_LOGFILE"
+HAMA_OPTS="$HAMA_OPTS -Dhama.home.dir=$HAMA_HOME"
+HAMA_OPTS="$HAMA_OPTS -Dhama.id.str=$HAMA_IDENT_STRING"
+HAMA_OPTS="$HAMA_OPTS -Dhama.root.logger=${HAMA_ROOT_LOGGER:-INFO,console}"
+if [ "x$JAVA_LIBRARY_PATH" != "x" ]; then
+  HAMA_OPTS="$HAMA_OPTS -Djava.library.path=$JAVA_LIBRARY_PATH"
+fi  
+
+# run it
+exec "$JAVA" $JAVA_HEAP_MAX $HAMA_OPTS -classpath "$CLASSPATH" $CLASS "$@"

Propchange: incubator/hama/branches/hama-0.19/bin/hama
------------------------------------------------------------------------------
    svn:executable = *

Added: incubator/hama/branches/hama-0.19/bin/hama-config.sh
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/bin/hama-config.sh?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/bin/hama-config.sh (added)
+++ incubator/hama/branches/hama-0.19/bin/hama-config.sh Thu Sep 10 05:32:52 2009
@@ -0,0 +1,65 @@
+#
+#/**
+# * Copyright 2007 The Apache Software Foundation
+# *
+# * Licensed to the Apache Software Foundation (ASF) under one
+# * or more contributor license agreements.  See the NOTICE file
+# * distributed with this work for additional information
+# * regarding copyright ownership.  The ASF licenses this file
+# * to you under the Apache License, Version 2.0 (the
+# * "License"); you may not use this file except in compliance
+# * with the License.  You may obtain a copy of the License at
+# *
+# *     http://www.apache.org/licenses/LICENSE-2.0
+# *
+# * Unless required by applicable law or agreed to in writing, software
+# * distributed under the License is distributed on an "AS IS" BASIS,
+# * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# * See the License for the specific language governing permissions and
+# * limitations under the License.
+# */
+
+# included in all the hama scripts with source command
+# should not be executable directly
+# also should not be passed any arguments, since we need original $*
+# Modelled after $HBASE_HOME/bin/hbase-config.sh.
+
+# resolve links - $0 may be a softlink
+
+this="$0"
+while [ -h "$this" ]; do
+  ls=`ls -ld "$this"`
+  link=`expr "$ls" : '.*-> \(.*\)$'`
+  if expr "$link" : '.*/.*' > /dev/null; then
+    this="$link"
+  else
+    this=`dirname "$this"`/"$link"
+  fi
+done
+
+# convert relative path to absolute path
+bin=`dirname "$this"`
+script=`basename "$this"`
+bin=`cd "$bin"; pwd`
+this="$bin/$script"
+
+# the root of the hama installation
+export HAMA_HOME=`dirname "$this"`/..
+
+#check to see if the conf dir or hama home are given as an optional arguments
+while [ $# -gt 1 ]
+do
+  if [ "--config" = "$1" ]
+  then
+    shift
+    confdir=$1
+    shift
+    HAMA_CONF_DIR=$confdir
+  else
+    # Presume we are at end of options and break
+    break
+  fi
+done
+ 
+# Allow alternate hama conf dir location.
+HAMA_CONF_DIR="${HAMA_CONF_DIR:-$HAMA_HOME/conf}"

Added: incubator/hama/branches/hama-0.19/build.xml
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/build.xml?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/build.xml (added)
+++ incubator/hama/branches/hama-0.19/build.xml Thu Sep 10 05:32:52 2009
@@ -0,0 +1,327 @@
+<?xml version="1.0"?>
+
+<!--
+   Licensed to the Apache Software Foundation (ASF) under one or more
+   contributor license agreements.  See the NOTICE file distributed with
+   this work for additional information regarding copyright ownership.
+   The ASF licenses this file to You under the Apache License, Version 2.0
+   (the "License"); you may not use this file except in compliance with
+   the License.  You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+
+<project name="hama" default="jar">
+    <property name="version" value="0.1.0-dev" />
+    <property name="Name" value="Hama" />
+    <property name="final.name" value="hama-${version}" />
+    <property name="year" value="2008" />
+
+    <!-- Load all the default properties, and any the user wants    -->
+    <!-- to contribute (without having to type -D or edit this file -->
+    <property file="${user.home}/${name}.build.properties" />
+    <property file="${basedir}/build.properties" />
+
+    <property name="src.dir" location="${basedir}/src/java" />
+    <property name="src.gen.dir" location="${basedir}/src-gen" />
+    <property name="src.test" location="${basedir}/src/test" />
+    <property name="src.examples" location="${basedir}/src/examples" />
+
+    <property name="lib.dir" value="${basedir}/lib" />
+    <property name="conf.dir" value="${basedir}/conf" />
+    <property name="docs.dir" value="${basedir}/docs" />
+    <property name="docs.src" value="${basedir}/src/docs" />
+
+	<!-- javacc properties -->
+    <property name="javacc.home" value="${basedir}/lib" />
+
+    <property name="src.gen.parser.expression.dir" value="${src.gen.dir}/org/apache/hama/shell/parser/expression" />
+    <property name="src.gen.parser.script.dir" value="${src.gen.dir}/org/apache/hama/shell/parser/script" />
+
+	<!-- build properties -->
+	
+    <property name="test.output" value="no" />
+    <property name="test.timeout" value="600000" />
+
+    <property name="build.dir" location="${basedir}/build" />
+    <property name="build.lib" location="${build.dir}/lib" />
+    <property name="build.classes" location="${build.dir}/classes" />
+    <property name="build.test" location="${build.dir}/test" />
+    <property name="build.examples" location="${build.dir}/examples" />
+    <property name="build.docs" value="${build.dir}/docs/site" />
+    <property name="build.javadoc" value="${build.docs}/api" />
+    <property name="build.encoding" value="ISO-8859-1" />
+    <property name="build.src" value="${build.dir}/src" />
+    
+    <property name="build.report" value="${build.dir}/reports" />
+    <property name="build.report.findbugs" value="${build.report}/findbugs" />
+    <property name="build.report.tests" value="${build.report}/tests" />
+    
+    <property name="test.build.dir" value="${build.dir}/test" />
+    <property name="test.junit.output.format" value="plain" />
+
+    <property name="dist.dir" value="${build.dir}/${final.name}" />
+
+    <property name="javac.deprecation" value="off" />
+    <property name="javac.debug" value="on" />
+
+    <property name="javadoc.link.java" 
+                 value="http://java.sun.com/javase/6/docs/api/" />
+    <property name="javadoc.packages" value="org.apache.hama.*" />
+
+    <fileset id="lib.jars" dir="${basedir}" includes="lib/*.jar" />
+    <path id="classpath">
+        <fileset refid="lib.jars" />
+        <fileset dir="${lib.dir}/jetty-ext/">
+            <include name="*jar" />
+        </fileset>
+        <fileset dir="${lib.dir}/findbugs/">
+            <include name="*jar" />
+        </fileset>
+        <pathelement location="${build.classes}" />
+        <pathelement location="${conf.dir}" />
+    </path>
+
+    <taskdef name="findbugs" classpathref="classpath" 
+    	classname="edu.umd.cs.findbugs.anttask.FindBugsTask" />
+
+    <target name="init">
+        <mkdir dir="${src.gen.dir}" />
+        <mkdir dir="${src.gen.parser.script.dir}" />
+        <mkdir dir="${src.gen.parser.expression.dir}" />
+        <mkdir dir="${build.dir}" />
+        <mkdir dir="${build.classes}" />
+        <mkdir dir="${build.test}" />
+        <mkdir dir="${build.examples}" />
+        <mkdir dir="${build.report.findbugs}" />
+        <mkdir dir="${build.report.tests}" />
+        <!--Copy bin, lib, and conf. too-->
+        <mkdir dir="${build.lib}" />
+        <copy todir="${build.lib}">
+            <fileset dir="${lib.dir}" />
+        </copy>
+    </target>
+	
+	<!-- ================================================================== -->
+    <!-- Java Compiler Compiler, generate Parsers                           -->
+    <!-- ================================================================== -->
+    <target name="cc-compile" depends="init" description="Create and Compile Parser">
+        <jjtree target="${src.dir}/org/apache/hama/shell/parser/expression/HamaExpressionParser.jjt" outputdirectory="${src.gen.parser.expression.dir}" javacchome="${javacc.home}" />
+        <javacc target="${src.gen.parser.expression.dir}/HamaExpressionParser.jj" outputdirectory="${src.gen.parser.expression.dir}" javacchome="${javacc.home}" />
+        <javacc target="${src.dir}/org/apache/hama/shell/parser/script/HamaScriptParser.jj" outputdirectory="${src.gen.parser.script.dir}" javacchome="${javacc.home}" />
+    </target>
+
+    <target name="compile" depends="init, cc-compile">
+        <!--Compile whats under src and generated java classes made from jsp-->
+        <mkdir dir="${build.src}" />
+        <javac encoding="${build.encoding}" 
+                srcdir="${src.dir};${src.gen.dir};${build.src}" includes="**/*.java" 
+        	destdir="${build.classes}" debug="${javac.debug}" 
+                deprecation="${javac.deprecation}">
+            <classpath refid="classpath" />
+        </javac>
+    </target>
+
+    <target name="compile-examples" depends="compile">
+        <javac encoding="${build.encoding}" srcdir="${src.examples}" 
+                includes="**/*.java" 
+        	destdir="${build.examples}" debug="${javac.debug}" 
+                deprecation="${javac.deprecation}">
+            <classpath refid="classpath" />
+        </javac>
+    </target>
+
+    <!-- Override jar target to specify main class -->
+    <target name="jar" depends="compile">
+        <jar jarfile="${build.dir}/${final.name}.jar" 
+              basedir="${build.classes}">
+            <manifest>
+                <attribute name="Main-Class" 
+                    value="org/apache/hama/shell/HamaShell" />
+            </manifest>
+        </jar>
+    </target>
+
+    <target name="examples" depends="jar, compile-examples" 
+    	description="Make the hama examples jar.">
+        <jar jarfile="${build.dir}/${final.name}-examples.jar" 
+                basedir="${build.examples}">
+            <manifest>
+                <attribute name="Main-Class" 
+                    value="org/apache/hama/examples/ExampleDriver" />
+            </manifest>
+        </jar>
+    </target>
+
+    <target name="package" depends="jar,javadoc,compile-test, examples" 
+    	description="Build distribution">
+        <mkdir dir="${dist.dir}" />
+        <copy todir="${dist.dir}" includeEmptyDirs="false" flatten="true">
+            <fileset dir="${build.dir}">
+                <include name="${final.name}.jar" />
+                <include name="${final.name}-test.jar" />
+            </fileset>
+        </copy>
+        <mkdir dir="${dist.dir}/lib" />
+        <copy todir="${dist.dir}/lib">
+            <fileset dir="${build.lib}" />
+        </copy>
+        <copy todir="${dist.dir}">
+            <fileset dir=".">
+                <include name="*.txt" />
+            </fileset>
+        </copy>
+        <mkdir dir="${dist.dir}/src" />
+        <copy todir="${dist.dir}/src" includeEmptyDirs="true">
+            <fileset dir="src" excludes="**/*.template **/docs/build/**/*" />
+        </copy>
+    </target>
+
+    <!-- ================================================================== -->
+    <!-- Make release tarball                                               -->
+    <!-- ================================================================== -->
+    <macrodef name="macro_tar" description="Worker Macro for tar">
+        <attribute name="param.destfile" />
+        <element name="param.listofitems" />
+        <sequential>
+            <tar compression="gzip" longfile="gnu" destfile="@{param.destfile}">
+                <param.listofitems />
+            </tar>
+        </sequential>
+    </macrodef>
+    <target name="tar" depends="package" description="Make release tarball">
+        <macro_tar param.destfile="${build.dir}/${final.name}.tar.gz">
+            <param.listofitems>
+                <tarfileset dir="${build.dir}" mode="664">
+                    <exclude name="${final.name}/bin/*" />
+                    <include name="${final.name}/**" />
+                </tarfileset>
+                <tarfileset dir="${build.dir}" mode="755">
+                    <include name="${final.name}/bin/*" />
+                </tarfileset>
+            </param.listofitems>
+        </macro_tar>
+    </target>
+
+    <target name="binary" depends="package" 
+    	description="Make tarball without source and documentation">
+        <macro_tar param.destfile="${build.dir}/${final.name}-bin.tar.gz">
+            <param.listofitems>
+                <tarfileset dir="${build.dir}" mode="664">
+                    <exclude name="${final.name}/bin/*" />
+                    <exclude name="${final.name}/src/**" />
+                    <exclude name="${final.name}/docs/**" />
+                    <include name="${final.name}/**" />
+                </tarfileset>
+                <tarfileset dir="${build.dir}" mode="755">
+                    <include name="${final.name}/bin/*" />
+                </tarfileset>
+            </param.listofitems>
+        </macro_tar>
+    </target>
+
+    <!-- ================================================================== -->
+    <!-- Doc                                                                -->
+    <!-- ================================================================== -->
+    <target name="docs" depends="forrest.check" description="Generate forrest-based documentation. To use, specify -Dforrest.home=&lt;base of Apache Forrest installation&gt; on the command line." if="forrest.home">
+        <exec dir="${docs.src}" executable="${forrest.home}/bin/forrest" 
+               failonerror="true">
+        	<env key="JAVA_HOME" value="${java5.home}"/>
+        </exec>
+        <copy todir="${build.docs}">
+          <fileset dir="${docs.src}/build/site/" />
+        </copy>
+    	<delete dir="${docs.src}/build/"/>
+    </target>
+
+    <target name="forrest.check" unless="forrest.home">
+        <fail message="'forrest.home' is not defined. Please pass -Dforrest.home=&lt;base of Apache Forrest installation&gt; to Ant on the command-line." />
+    </target>
+
+    <!-- Javadoc -->
+    <target name="javadoc" depends="cc-compile" description="Generate javadoc">
+        <mkdir dir="${build.javadoc}" />
+        <javadoc overview="${src.dir}/overview.html" packagenames="org.apache.hama.*" 
+        	    destdir="${build.javadoc}" author="true" version="true" use="true" 
+        	    windowtitle="${Name} ${version} API" doctitle="${Name} ${version} API" 
+        	    bottom="Copyright &amp;copy; ${year} The Apache Software Foundation">
+            <packageset dir="${src.dir}">
+                <include name="org/apache/**" />
+            </packageset>
+            <packageset dir="${src.gen.dir}">
+                <include name="org/apache/**" />
+            </packageset>
+            <link href="${javadoc.link.java}" />
+            <classpath>
+                <path refid="classpath" />
+                <pathelement path="${java.class.path}" />
+            </classpath>
+            <group title="${Name}" packages="org.apache.hama.*" />
+        </javadoc>
+    </target>
+
+    <!-- ================================================================== -->
+    <!-- Run unit tests                                                     -->
+    <!-- ================================================================== -->
+    <path id="test.classpath">
+        <pathelement location="${src.test}" />
+        <pathelement location="${build.test}" />
+        <path refid="classpath" />
+        <pathelement location="${build.dir}" />
+    </path>
+
+    <target name="compile-test" depends="compile">
+        <javac encoding="${build.encoding}" srcdir="${src.test}" 
+           includes="**/*.java" destdir="${build.test}" debug="${javac.debug}">
+            <classpath refid="test.classpath" />
+        </javac>
+        <jar jarfile="${build.dir}/${final.name}-test.jar">
+            <fileset dir="${build.test}" includes="org/**" />
+            <fileset dir="${build.classes}" />
+            <fileset dir="${src.test}" includes="**/*.properties" />
+            <manifest>
+              <attribute name="Main-Class" value="org/apache/hama/Benchmarks" />
+            </manifest>
+        </jar>
+    </target>
+
+    <target name="test" depends="compile-test, compile">
+        <junit printsummary="yes" showoutput="${test.output}" haltonfailure="no"
+              fork="yes" maxmemory="512m" errorProperty="tests.failed" 
+        	     failureProperty="tests.failed" timeout="${test.timeout}">
+            <classpath refid="test.classpath" />
+            <formatter type="${test.junit.output.format}" />
+            <batchtest todir="${build.report.tests}">
+                <fileset dir="${src.test}" includes="**/Test*.java" 
+                	 excludes="**/${test.exclude}.java" />
+            </batchtest>
+        </junit>
+        <fail if="tests.failed">Tests failed!</fail>
+    </target>
+
+    <target name="findbugs" depends="init, jar">
+        <findbugs home="${lib.dir}/findbugs" output="xml" 
+        	     outputFile="${build.report.findbugs}/hama-findbugs.xml" 
+               excludeFilter="${conf.dir}/findbugs-exclude-filter.xml"
+        	     auxClasspathRef="classpath">
+            <sourcePath path="${src.dir}" />
+            <class location="${build.dir}/${final.name}.jar" />
+        </findbugs>
+    </target>
+    
+    <target name="report" depends="findbugs,test"></target>
+    
+    <!-- ================================================================== -->
+    <!-- Clean.  Delete the build files, and their directories              -->
+    <!-- ================================================================== -->
+    <target name="clean">
+        <delete dir="${src.gen.dir}" />
+        <delete dir="${build.dir}" />
+    </target>
+</project>

Added: incubator/hama/branches/hama-0.19/conf/findbugs-exclude-filter.xml
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/conf/findbugs-exclude-filter.xml?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/conf/findbugs-exclude-filter.xml (added)
+++ incubator/hama/branches/hama-0.19/conf/findbugs-exclude-filter.xml Thu Sep 10 05:32:52 2009
@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="iso-8859-1"?>
+<!--
+  Licensed to the Apache Software Foundation (ASF) under one or more
+  contributor license agreements.  See the NOTICE file distributed with
+  this work for additional information regarding copyright ownership.
+  The ASF licenses this file to You under the Apache License, Version 2.0
+  (the "License"); you may not use this file except in compliance with
+  the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
++-->
+
+<FindBugsFilter>
+  <!-- Disable the warnings for the generated classes -->
+  <Match>
+    <Class name="~org.apache.hama.shell.parser.script.*" />
+  </Match>
+  <Match>
+    <Class name="~org.apache.hama.shell.parser.expression.*" />
+  </Match>
+</FindBugsFilter>

Added: incubator/hama/branches/hama-0.19/conf/hama-env.sh
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/conf/hama-env.sh?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/conf/hama-env.sh (added)
+++ incubator/hama/branches/hama-0.19/conf/hama-env.sh Thu Sep 10 05:32:52 2009
@@ -0,0 +1,40 @@
+#
+#/**
+# * Copyright 2007 The Apache Software Foundation
+# *
+# * Licensed to the Apache Software Foundation (ASF) under one
+# * or more contributor license agreements.  See the NOTICE file
+# * distributed with this work for additional information
+# * regarding copyright ownership.  The ASF licenses this file
+# * to you under the Apache License, Version 2.0 (the
+# * "License"); you may not use this file except in compliance
+# * with the License.  You may obtain a copy of the License at
+# *
+# *     http://www.apache.org/licenses/LICENSE-2.0
+# *
+# * Unless required by applicable law or agreed to in writing, software
+# * distributed under the License is distributed on an "AS IS" BASIS,
+# * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# * See the License for the specific language governing permissions and
+# * limitations under the License.
+# */
+
+# Set environment variables here.
+
+# The java implementation to use.  Required.
+# export JAVA_HOME=/usr/lib/j2sdk1.5-sun
+
+# hadoop conf dir. to find the mapreduce cluster.
+# export HADOOP_CONF_DIR=
+
+# hbase conf dir. to find the hbase cluster.
+# export HBASE_CONF_DIR= 
+
+# Extra Java CLASSPATH elements.  Optional.
+# export HAMA_CLASSPATH=$HADOOP_CONF_DIR:$HBASE_CONF_DIR
+
+# The maximum amount of heap to use, in MB. Default is 1000.
+# export HBASE_HEAPSIZE=1000
+
+# Where log files are stored.  $HAMA_HOME/logs by default.
+# export HAMA_LOG_DIR=${HAMA_HOME}/logs

Added: incubator/hama/branches/hama-0.19/conf/hama-site.xml
URL: http://svn.apache.org/viewvc/incubator/hama/branches/hama-0.19/conf/hama-site.xml?rev=813233&view=auto
==============================================================================
--- incubator/hama/branches/hama-0.19/conf/hama-site.xml (added)
+++ incubator/hama/branches/hama-0.19/conf/hama-site.xml Thu Sep 10 05:32:52 2009
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<?xml-stylesheet type="text/xsl" href="configuration.xsl"?>
+<!--
+/**
+ * Copyright 2007 The Apache Software Foundation
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+-->
+<configuration>
+</configuration>

Added: incubator/hama/branches/hama-0.19/conf/log4j.properties
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--- incubator/hama/branches/hama-0.19/conf/log4j.properties (added)
+++ incubator/hama/branches/hama-0.19/conf/log4j.properties Thu Sep 10 05:32:52 2009
@@ -0,0 +1,45 @@
+# Define some default values that can be overridden by system properties
+hbase.root.logger=INFO,console
+hbase.log.dir=.
+hbase.log.file=hama.log
+
+# Define the root logger to the system property "hama.root.logger".
+log4j.rootLogger=${hama.root.logger}
+
+# Logging Threshold
+log4j.threshhold=ALL
+
+#
+# Daily Rolling File Appender
+#
+log4j.appender.DRFA=org.apache.log4j.DailyRollingFileAppender
+log4j.appender.DRFA.File=${hama.log.dir}/${hama.log.file}
+
+# Rollver at midnight
+log4j.appender.DRFA.DatePattern=.yyyy-MM-dd
+
+# 30-day backup
+#log4j.appender.DRFA.MaxBackupIndex=30
+log4j.appender.DRFA.layout=org.apache.log4j.PatternLayout
+
+# Pattern format: Date LogLevel LoggerName LogMessage
+log4j.appender.DRFA.layout.ConversionPattern=%d{ISO8601} %p %c: %m%n
+
+# Debugging Pattern format
+#log4j.appender.DRFA.layout.ConversionPattern=%d{ISO8601} %-5p %c{2} (%F:%M(%L)) - %m%n
+
+
+#
+# console
+# Add "console" to rootlogger above if you want to use this 
+#
+log4j.appender.console=org.apache.log4j.ConsoleAppender
+log4j.appender.console.target=System.err
+log4j.appender.console.layout=org.apache.log4j.PatternLayout
+log4j.appender.console.layout.ConversionPattern=%d{yy/MM/dd HH:mm:ss} %p %c{2}: %m%n
+
+# Custom Logging levels
+
+#log4j.logger.org.apache.hadoop.fs.FSNamesystem=DEBUG
+#log4j.logger.org.apache.hadoop.dfs=DEBUG
+#log4j.logger.org.apache.hama=DEBUG

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