Return-Path: X-Original-To: apmail-incubator-ctakes-user-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-user-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id B382CDE3B for ; Thu, 25 Oct 2012 05:28:32 +0000 (UTC) Received: (qmail 87271 invoked by uid 500); 25 Oct 2012 05:28:32 -0000 Delivered-To: apmail-incubator-ctakes-user-archive@incubator.apache.org Received: (qmail 87140 invoked by uid 500); 25 Oct 2012 05:28:27 -0000 Mailing-List: contact ctakes-user-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-user@incubator.apache.org Delivered-To: mailing list ctakes-user@incubator.apache.org Received: (qmail 87098 invoked by uid 99); 25 Oct 2012 05:28:26 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Thu, 25 Oct 2012 05:28:26 +0000 X-ASF-Spam-Status: No, hits=-2.3 required=5.0 tests=RCVD_IN_DNSWL_MED,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: local policy) Received: from [129.176.212.47] (HELO mail10.mayo.edu) (129.176.212.47) by apache.org (qpsmtpd/0.29) with ESMTP; Thu, 25 Oct 2012 05:28:16 +0000 X-IronPort-AV: E=Sophos;i="4.80,645,1344229200"; d="scan'208";a="187209264" Received: from roedlp005a.mayo.edu (HELO mail10.mayo.edu) ([129.176.158.0]) by ironport10-dlp.mayo.edu with ESMTP; 25 Oct 2012 00:27:55 -0500 X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: Av4EAJLMiFCBsNQ1/2dsb2JhbABEwh+BCIIeAQEBBIEJAgEIEQQBAQsdBzIUCQgCBBMIh3y0KIkIi2GGDGEDiCeeBYJvghk X-IronPort-AV: E=Sophos;i="4.80,645,1344229200"; d="scan'208";a="187209263" Received: from mhro1a.mayo.edu ([129.176.212.53]) by ironport10.mayo.edu with ESMTP; 25 Oct 2012 00:27:55 -0500 Received: from MSGPEXCHA07A.mfad.mfroot.org (msgpexcha07a.mayo.edu [129.176.249.223]) by mhro1a.mayo.edu with ESMTP id BT-MMP-1241667 for ctakes-user@incubator.apache.org; Thu, 25 Oct 2012 00:27:53 -0500 Received: from MSGPEXCEI31B.mfad.mfroot.org (129.176.249.166) by MSGPEXCHA07A.mfad.mfroot.org (129.176.249.223) with Microsoft SMTP Server (TLS) id 14.2.309.2; Thu, 25 Oct 2012 00:27:53 -0500 Received: from MSGPEXCHA08A.mfad.mfroot.org ([169.254.11.161]) by MSGPEXCEI31B.mfad.mfroot.org ([169.254.6.202]) with mapi id 14.02.0309.002; Thu, 25 Oct 2012 00:27:52 -0500 From: "Masanz, James J." To: "'ctakes-user@incubator.apache.org'" Subject: RE: Expected Results Thread-Topic: Expected Results Thread-Index: AQHNsWu5VkWRxljYSE6CONnOo3MSfZfJfyXw Date: Thu, 25 Oct 2012 05:27:52 +0000 Message-ID: <996FC801C05DF64A84246A106FACACD0028DD6@MSGPEXCHA08A.mfad.mfroot.org> References: In-Reply-To: Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [10.128.209.24] Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-CFilter-Loop: Reflected X-Virus-Checked: Checked by ClamAV on apache.org Below is the response from Sean Murphy: ----------------------------------------------------------------- Hello Leonard, I would be happy to assist in any way I can. I want to be sure I understand what type of behavior you are expecting. I'm using the CVD application to view the one of processed tester*.xml files you provided. Other than missing the 'multivitamin' mention I see that most drugs are discovered in the medication list. Is it how the annotations attributes are being picked up (or missed) or something else that you are anticipating? Thanks, ~Sean From: ctakes-user-return-14-Masanz.James=3Dmayo.edu@incubator.apache.org [m= ailto:ctakes-user-return-14-Masanz.James=3Dmayo.edu@incubator.apache.org] O= n Behalf Of Leonard Jacuzzo Sent: Tuesday, October 23, 2012 5:13 PM To: ctakes-user@incubator.apache.org Subject: Expected Results Dear List, =A0 I have been experimenting with cTAKES. It looks promising, but I am wonderi= ng whether or not I am getting the expected results.=20 =A0 I have attached a text file that is a transcription example I found on line= . tester1 is the textfile. tester.txt.xml is the result of running the Aggr= egateUMLSplaintext cdp. tester1.txt.xml is the result of running a CPE with= DrugNER(Plaintext UMLS) aggregate analysis engine. I have attached the CPE= description here as LJFDRNER.xml... =A0 =A0 If it is not too much trouble, I am hoping that someone that is familiar wi= th the expected outputs will take a look at these to see if this is what is= expected.=20 =A0 The Drug NER does not seem to do what I expected. =A0 Any help will be greatly appreciated. =A0 Best wishes, Leonard