Return-Path: X-Original-To: apmail-incubator-ctakes-user-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-user-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 60BD9DAFF for ; Fri, 19 Oct 2012 14:58:24 +0000 (UTC) Received: (qmail 32133 invoked by uid 500); 19 Oct 2012 14:58:24 -0000 Delivered-To: apmail-incubator-ctakes-user-archive@incubator.apache.org Received: (qmail 32069 invoked by uid 500); 19 Oct 2012 14:58:22 -0000 Mailing-List: contact ctakes-user-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-user@incubator.apache.org Delivered-To: mailing list ctakes-user@incubator.apache.org Received: (qmail 32029 invoked by uid 99); 19 Oct 2012 14:58:21 -0000 Received: from athena.apache.org (HELO athena.apache.org) (140.211.11.136) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 19 Oct 2012 14:58:21 +0000 X-ASF-Spam-Status: No, hits=-0.1 required=5.0 tests=HTML_MESSAGE,RCVD_IN_DNSWL_MED,SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (athena.apache.org: local policy) Received: from [129.176.212.47] (HELO mail10.mayo.edu) (129.176.212.47) by apache.org (qpsmtpd/0.29) with ESMTP; Fri, 19 Oct 2012 14:58:11 +0000 X-IronPort-AV: E=Sophos;i="4.80,612,1344229200"; d="scan'208,217";a="186110873" Received: from roedlp004a.mayo.edu (HELO mail10.mayo.edu) ([129.176.158.14]) by ironport10-dlp.mayo.edu with ESMTP; 19 Oct 2012 09:57:50 -0500 X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: Av8EACZpgVCBsNQ1/2dsb2JhbABFgkq+F4EIgiABAQEELVwCAQgRBAEBCx0HMhQJCAIEEwiHfLQRiQiLWIYPYAOmJ4Jvghc X-IronPort-AV: E=Sophos;i="4.80,612,1344229200"; d="scan'208,217";a="186110870" Received: from mhro1a.mayo.edu ([129.176.212.53]) by ironport10.mayo.edu with ESMTP; 19 Oct 2012 09:57:50 -0500 Received: from MSGPEXCHA07A.mfad.mfroot.org (msgpexcha07a.mayo.edu [129.176.249.223]) by mhro1a.mayo.edu with ESMTP id BT-MMP-6455538 for ctakes-user@incubator.apache.org; Fri, 19 Oct 2012 09:57:50 -0500 Received: from MSGPEXCEI11A.mfad.mfroot.org (129.176.249.138) by MSGPEXCHA07A.mfad.mfroot.org (129.176.249.223) with Microsoft SMTP Server (TLS) id 14.2.309.2; Fri, 19 Oct 2012 09:57:49 -0500 Received: from MSGPEXCHA08A.mfad.mfroot.org ([169.254.11.161]) by MSGPEXCEI11A.mfad.mfroot.org ([169.254.5.196]) with mapi id 14.02.0309.002; Fri, 19 Oct 2012 09:57:49 -0500 From: "Masanz, James J." To: "'ctakes-user@incubator.apache.org'" Subject: RE: combining components Thread-Topic: combining components Thread-Index: AQHNrXYrOEegmsQ+EEu0R5jbgFQD8JfAtzRQ Date: Fri, 19 Oct 2012 14:57:48 +0000 Message-ID: <996FC801C05DF64A84246A106FACACD002766B@MSGPEXCHA08A.mfad.mfroot.org> References: In-Reply-To: Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [10.128.209.19] Content-Type: multipart/alternative; boundary="_000_996FC801C05DF64A84246A106FACACD002766BMSGPEXCHA08Amfadm_" MIME-Version: 1.0 X-CFilter-Loop: Reflected X-Virus-Checked: Checked by ClamAV on apache.org --_000_996FC801C05DF64A84246A106FACACD002766BMSGPEXCHA08Amfadm_ Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable I have not tested all the possible combinations. Sorry if some of this might be obvious to you, but for others' reference: It partly depends on if you are combining aggregates or individual annotato= rs. You would not want to combine aggregates that would cause, for example, the= tokenizer or part of speech tagger to be run multiple times. In addition, the clinical documents pipeline aggregate and Drug NER both cr= eate annotations for medications, for example, so you probably would not wa= nt to use both of those aggregates together. If you list the ones you'd like to use together, I will try them out and se= e if I spot any problems. Also, which version of cTAKES you are using? Regards, James Masanz From: ctakes-user-return-10-Masanz.James=3Dmayo.edu@incubator.apache.org [m= ailto:ctakes-user-return-10-Masanz.James=3Dmayo.edu@incubator.apache.org] O= n Behalf Of Leonard Jacuzzo Sent: Thursday, October 18, 2012 4:18 PM To: ctakes-user@incubator.apache.org Subject: combining components Dear List, I have a question about combining the functionality of cTAKES. If I want to use the collection processing pipeline, along with DrugNER and= Smoking status etc. Is it as simply as adding them together in the CPE gui and then using a sin= gle cas consumer at the end. Or do I have to run each individually? Ideally I would like to get all of the annotations that are available in on= e sweep. Any help will be greatly appreciated. Best wishes, Leonard --_000_996FC801C05DF64A84246A106FACACD002766BMSGPEXCHA08Amfadm_ Content-Type: text/html; charset="us-ascii" Content-Transfer-Encoding: quoted-printable

 <= /p>

I have not tested all the= possible combinations.

 <= /p>

Sorry if some of this mig= ht be obvious to you, but for others' reference:

It partly depends on if y= ou are combining aggregates or individual annotators.

You would not want to com= bine aggregates that would cause, for example, the tokenizer or part of spe= ech tagger to be run multiple times.

In addition, the clinical= documents pipeline aggregate and Drug NER both create annotations for medi= cations, for example, so you probably would not want to use both of those aggregates together.

 <= /p>

If you list the ones you'= d like to use together, I will try them out and see if I spot any problems.=

Also, which version of cT= AKES you are using?

 <= /p>

Regards,

 <= /p>

From: ctakes-u= ser-return-10-Masanz.James=3Dmayo.edu@incubator.apache.org [mailto:ctakes-u= ser-return-10-Masanz.James=3Dmayo.edu@incubator.apache.org] On Behalf Of Leonard Jacuzzo
Sent: Thursday, October 18, 2012 4:18 PM
To: ctakes-user@incubator.apache.org
Subject: combining components

 

Dear List,

 

I have a question about combining the functionality = of cTAKES.

 

If I want to use the collection processing pipeline,= along with DrugNER and Smoking status etc.

 

Is it as simply as adding them together in the CPE g= ui and then using a single cas consumer at the end.

 

Or do I have to run each individually?

 

Ideally I would like to get all of the annotations t= hat are available in one sweep.

 

Any help will be greatly appreciated.

 

Best wishes,

 

Leonard

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