incubator-ctakes-notifications mailing list archives: February 2013

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[jira] [Updated] (CTAKES-132) Some Knowtator EntityMentions annotations have no spans when brought into UIMA
Stephen Wu (JIRA)   [jira] [Updated] (CTAKES-132) Some Knowtator EntityMentions annotations have no spans when brought into UIMA Fri, 01 Feb, 16:30
[jira] [Updated] (CTAKES-131) Reconcile Type System with the updated CEM templates
Stephen Wu (JIRA)   [jira] [Updated] (CTAKES-131) Reconcile Type System with the updated CEM templates Fri, 01 Feb, 16:30
Stephen Wu (JIRA)   [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates Thu, 14 Feb, 18:25
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates Thu, 14 Feb, 20:21
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates Thu, 14 Feb, 21:33
[jira] [Created] (CTAKES-139) FileNotFoundException: .... SideEffectTypeSystem.xml (The system cannot find the path specified)
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-139) FileNotFoundException: .... SideEffectTypeSystem.xml (The system cannot find the path specified) Mon, 04 Feb, 01:09
James Joseph Masanz (JIRA)   [jira] [Commented] (CTAKES-139) FileNotFoundException: .... SideEffectTypeSystem.xml (The system cannot find the path specified) Mon, 04 Feb, 01:13
[jira] [Created] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL.
Pei Chen (JIRA)   [jira] [Created] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Mon, 04 Feb, 16:56
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Mon, 04 Feb, 17:10
Pei Chen (JIRA)   [jira] [Commented] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Mon, 04 Feb, 17:34
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Mon, 04 Feb, 17:54
[jira] [Created] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator Mon, 04 Feb, 18:34
James Joseph Masanz (JIRA)   [jira] [Commented] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator Mon, 04 Feb, 18:44
James Joseph Masanz (JIRA)   [jira] [Updated] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator Mon, 04 Feb, 18:44
[jira] [Updated] (CTAKES-138) Remove 3rd party jars from our SVN
Pei Chen (JIRA)   [jira] [Updated] (CTAKES-138) Remove 3rd party jars from our SVN Mon, 04 Feb, 19:06
Pei Chen (JIRA)   [jira] [Commented] (CTAKES-138) Remove 3rd party jars from our SVN Mon, 04 Feb, 19:08
[jira] [Resolved] (CTAKES-136) Move models and binary from the src/main/resources to SourceForge
Pei Chen (JIRA)   [jira] [Resolved] (CTAKES-136) Move models and binary from the src/main/resources to SourceForge Mon, 04 Feb, 19:08
[jira] [Created] (CTAKES-142) can't find lookup/snomed-like_codes_sample Side effect descriptors need relative path updates
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-142) can't find lookup/snomed-like_codes_sample Side effect descriptors need relative path updates Mon, 04 Feb, 19:26
[jira] [Updated] (CTAKES-130) DictionaryLookupAnnotatorDB default config error
Pei Chen (JIRA)   [jira] [Updated] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Mon, 04 Feb, 21:12
Pei Chen (JIRA)   [jira] [Resolved] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Mon, 04 Feb, 21:14
[jira] [Created] (CTAKES-143) dictionary lookup iterates inefficiently
Tim Miller (JIRA)   [jira] [Created] (CTAKES-143) dictionary lookup iterates inefficiently Mon, 04 Feb, 21:34
Tim Miller (JIRA)   [jira] [Updated] (CTAKES-143) dictionary lookup iterates inefficiently Mon, 04 Feb, 21:44
Tim Miller (JIRA)   [jira] [Updated] (CTAKES-143) dictionary lookup iterates inefficiently Tue, 05 Feb, 14:41
Tim Miller (JIRA)   [jira] [Updated] (CTAKES-143) dictionary lookup iterates inefficiently Tue, 05 Feb, 17:16
Tim Miller (JIRA)   [jira] [Resolved] (CTAKES-143) dictionary lookup iterates inefficiently Wed, 06 Feb, 14:27
[jira] [Created] (CTAKES-144) The ctakes-distribution module should be excluded from deployment to maven central.
Pei Chen (JIRA)   [jira] [Created] (CTAKES-144) The ctakes-distribution module should be excluded from deployment to maven central. Mon, 04 Feb, 21:48
Pei Chen (JIRA)   [jira] [Resolved] (CTAKES-144) The ctakes-distribution module should be excluded from deployment to maven central. Mon, 04 Feb, 21:54
[jira] [Created] (CTAKES-145) inconsistent handling of upper ascii
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-145) inconsistent handling of upper ascii Tue, 05 Feb, 16:36
James Joseph Masanz (JIRA)   [jira] [Commented] (CTAKES-145) inconsistent handling of upper ascii Tue, 05 Feb, 20:05
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-145) inconsistent handling of upper ascii Tue, 05 Feb, 20:13
Andy McMurry (JIRA)   [jira] [Commented] (CTAKES-145) inconsistent handling of upper ascii Tue, 05 Feb, 20:17
[jira] [Created] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently
Kim Ebert (JIRA)   [jira] [Created] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently Wed, 06 Feb, 03:19
Kim Ebert (JIRA)   [jira] [Commented] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently Wed, 06 Feb, 03:21
Kim Ebert (JIRA)   [jira] [Commented] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently Wed, 06 Feb, 16:47
[jira] [Created] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar Wed, 06 Feb, 15:23
James Joseph Masanz (JIRA)   [jira] [Assigned] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar Wed, 06 Feb, 16:21
James Joseph Masanz (JIRA)   [jira] [Commented] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar Wed, 06 Feb, 16:37
James Joseph Masanz (JIRA)   [jira] [Updated] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar Wed, 06 Feb, 16:37
[jira] [Created] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml Wed, 06 Feb, 15:25
James Joseph Masanz (JIRA)   [jira] [Updated] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml Wed, 06 Feb, 15:43
James Joseph Masanz (JIRA)   [jira] [Commented] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml Wed, 06 Feb, 15:49
James Joseph Masanz (JIRA)   [jira] [Updated] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml Wed, 06 Feb, 16:19
James Joseph Masanz (JIRA)   [jira] [Assigned] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml Wed, 06 Feb, 16:19
James Joseph Masanz (JIRA)   [jira] [Commented] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml Wed, 06 Feb, 16:21
[jira] [Created] (CTAKES-149) cTAKES is not thread safe.
Kim Ebert (JIRA)   [jira] [Created] (CTAKES-149) cTAKES is not thread safe. Wed, 06 Feb, 17:05
[jira] [Created] (CTAKES-150) Apostrophe parsing is not thread safe because of global variable
Kim Ebert (JIRA)   [jira] [Created] (CTAKES-150) Apostrophe parsing is not thread safe because of global variable Wed, 06 Feb, 17:07
Kim Ebert (JIRA)   [jira] [Updated] (CTAKES-150) Apostrophe parsing is not thread safe because of global variable Wed, 06 Feb, 17:07
[jira] [Created] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM.
Kim Ebert (JIRA)   [jira] [Created] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. Wed, 06 Feb, 17:11
Kim Ebert (JIRA)   [jira] [Updated] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. Wed, 06 Feb, 17:15
Pei Chen (JIRA)   [jira] [Commented] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. Fri, 15 Feb, 17:27
[jira] [Created] (CTAKES-152) ConceptLookup returns inconsistent results because it depends upon HashMap ordering
Kim Ebert (JIRA)   [jira] [Created] (CTAKES-152) ConceptLookup returns inconsistent results because it depends upon HashMap ordering Wed, 06 Feb, 17:21
Kim Ebert (JIRA)   [jira] [Updated] (CTAKES-152) ConceptLookup returns inconsistent results because it depends upon HashMap ordering Wed, 06 Feb, 17:23
[jira] [Created] (CTAKES-153) clean up constituency parser code
Tim Miller (JIRA)   [jira] [Created] (CTAKES-153) clean up constituency parser code Wed, 06 Feb, 22:15
Tim Miller (JIRA)   [jira] [Resolved] (CTAKES-153) clean up constituency parser code Thu, 07 Feb, 20:45
[jira] [Created] (CTAKES-154) Add i2b2 features to assertion module
Tim Miller (JIRA)   [jira] [Created] (CTAKES-154) Add i2b2 features to assertion module Thu, 07 Feb, 20:45
[jira] [Created] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters
Steven Bethard (JIRA)   [jira] [Created] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters Fri, 08 Feb, 05:19
[jira] [Commented] (CTAKES-76) get third party dependencies into Maven Central
Pei Chen (JIRA)   [jira] [Commented] (CTAKES-76) get third party dependencies into Maven Central Fri, 08 Feb, 15:51
Pei Chen (JIRA)   [jira] [Commented] (CTAKES-76) get third party dependencies into Maven Central Wed, 20 Feb, 03:51
[jira] [Created] (CTAKES-156) java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-156) java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml Fri, 08 Feb, 20:19
[jira] [Created] (CTAKES-157) ctakes-side-effect .classpath has extraneous entry
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-157) ctakes-side-effect .classpath has extraneous entry Fri, 08 Feb, 22:31
[jira] [Created] (CTAKES-158) DateAnnotation bug when two dates directly adjacent
James Joseph Masanz (JIRA)   [jira] [Created] (CTAKES-158) DateAnnotation bug when two dates directly adjacent Mon, 11 Feb, 17:29
Apache Jenkins Server Build failed in Jenkins: ctakes-trunk-compiletest » Apache cTAKES core #178 Thu, 14 Feb, 20:40
Apache Jenkins Server   Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES core #179 Thu, 14 Feb, 23:21
Apache Jenkins Server Build failed in Jenkins: ctakes-trunk-compiletest #178 Thu, 14 Feb, 20:40
Apache Jenkins Server   Jenkins build is back to normal : ctakes-trunk-compiletest #179 Thu, 14 Feb, 23:22
[jira] [Commented] (CTAKES-57) Type System updates for 3.x-incubating
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-57) Type System updates for 3.x-incubating Fri, 15 Feb, 00:13
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-57) Type System updates for 3.x-incubating Fri, 15 Feb, 02:13
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-57) Type System updates for 3.x-incubating Sat, 16 Feb, 19:35
Steven Bethard (JIRA)   [jira] [Commented] (CTAKES-57) Type System updates for 3.x-incubating Tue, 26 Feb, 12:40
[jira] [Created] (CTAKES-159) Increase the use of java generics in the cTakes code
Sean Finan (JIRA)   [jira] [Created] (CTAKES-159) Increase the use of java generics in the cTakes code Fri, 15 Feb, 22:09
[jira] [Created] (CTAKES-160) Exception Refinement
Sean Finan (JIRA)   [jira] [Created] (CTAKES-160) Exception Refinement Fri, 15 Feb, 22:11
[jira] [Created] (CTAKES-161) Java 1.5+
Sean Finan (JIRA)   [jira] [Created] (CTAKES-161) Java 1.5+ Fri, 15 Feb, 22:15
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES document preprocessor #181 Fri, 15 Feb, 23:59
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES Dependency Parser #181 Fri, 15 Feb, 23:59
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES chunker #181 Fri, 15 Feb, 23:59
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES Drug NER #181 Fri, 15 Feb, 23:59
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES core #181 Fri, 15 Feb, 23:59
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES ctakes-clinical-pipeline #181 Fri, 15 Feb, 23:59
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES dictionary lookup #181 Fri, 15 Feb, 23:59
Apache Jenkins Server Jenkins build is back to normal : ctakes-trunk-compiletest » Apache cTAKES CoReference Resolver #181 Fri, 15 Feb, 23:59
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