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From "James Joseph Masanz (JIRA)" <j...@apache.org>
Subject [jira] [Created] (CTAKES-156) java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml
Date Fri, 08 Feb 2013 20:19:17 GMT
James Joseph Masanz created CTAKES-156:
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             Summary: java.io.FileNotFoundException: lookup/rxnorm_index  when using DictionaryLookupAnnotator_sideEffectUMLS.xml
                 Key: CTAKES-156
                 URL: https://issues.apache.org/jira/browse/CTAKES-156
             Project: cTAKES
          Issue Type: Bug
          Components: ctakes-side-effect
    Affects Versions: 3.0-incubating, 3.1-incubating
            Reporter: James Joseph Masanz
             Fix For: 3.1-incubating


Using RC7 of 3.0.0-incubating:

2/8/13 2:10:15 PM - 10: org.apache.uima.tools.cvd.MainFrame.handleException(527): SEVERE:
Exception occurred
org.apache.uima.resource.ResourceInitializationException
	at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:79)

Caused by: java.io.FileNotFoundException: lookup/rxnorm_index
	at org.apache.ctakes.core.resource.FileLocator.locateExplicitly(FileLocator.java:69)
	at org.apache.ctakes.core.resource.FileLocator.locateFile(FileLocator.java:44)
	at org.apache.ctakes.core.resource.LuceneIndexReaderResourceImpl.load(LuceneIndexReaderResourceImpl.java:57)
	... 59 more




DictionaryLookupAnnotator_sideEffectUMLS.xml contains this line
                  <string>lookup/rxnorm_index</string>
whereas  DictionaryLookupAnnotator_sideEffect.xml  contains this line
                  <string>org/apache/ctakes/dictionary/lookup/drug_index</string>

Personally I don't think this is severe enough to hold up the release of 3.0.0, but if we
have to create a new RC for some other reason, should consider adding it to the next RC

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