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From Apache Jenkins Server <jenk...@builds.apache.org>
Subject Build failed in Jenkins: ctakes-trunk-package #60
Date Tue, 19 Feb 2013 09:19:25 GMT
See <https://builds.apache.org/job/ctakes-trunk-package/60/changes>

Changes:

[tmill] Added option to print out errors for relations.

[tmill] Checked in uncertainty cue word resource file and feature extractor for it.

------------------------------------------
[...truncated 2424 lines...]
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'.
[INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'.
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-pad-term-spotter ---
[INFO] Compiling 274 source files to <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-pad-term-spotter/target/classes>
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-pad-term-spotter/src/test/resources>
[INFO] Copying 3 resources
[INFO] 
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-pad-term-spotter
---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-pad-term-spotter
---
[INFO] [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-pad-term-spotter/target/surefire-reports>

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

[INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-pad-term-spotter ---

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results
[INFO] 
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-pad-term-spotter ---
[INFO] Building jar: <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-pad-term-spotter/target/ctakes-pad-term-spotter-3.1.0-incubating-SNAPSHOT.jar>
[INFO] 
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-pad-term-spotter
---
[INFO] [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-pad-term-spotter/target/ctakes-pad-term-spotter-3.1.0-incubating-SNAPSHOT.jar>
to /home/jenkins/jenkins-slave/maven-repositories/0/org/apache/ctakes/ctakes-pad-term-spotter/3.1.0-incubating-SNAPSHOT/ctakes-pad-term-spotter-3.1.0-incubating-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-pad-term-spotter/pom.xml>
to /home/jenkins/jenkins-slave/maven-repositories/0/org/apache/ctakes/ctakes-pad-term-spotter/3.1.0-incubating-SNAPSHOT/ctakes-pad-term-spotter-3.1.0-incubating-SNAPSHOT.pom

[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-pad-term-spotter
---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES Temporal Information Extraction 3.1.0-incubating-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] [INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.0:jar
[INFO] ctakes-resources-umls2011ab-3.1.0.jar already unpacked.

[INFO] --- maven-dependency-plugin:2.6:unpack (unpack) @ ctakes-temporal ---
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-temporal ---
[INFO] [debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/resources>
[INFO] Copying 3 resources

[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[INFO] 
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 8 source files to <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/SystemTemporalRelationPrinter.java>:[80,4]
cannot find symbol
symbol  : constructor EvaluationOfTemporalRelations(java.io.File,java.io.File,java.io.File,java.io.File)
location: class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Apache cTAKES ..................................... SUCCESS [20.793s]
[INFO] Apache cTAKES common type system .................. SUCCESS [16.317s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.339s]
[INFO] Apache cTAKES core ................................ SUCCESS [15.550s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.001s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [4.139s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [5.070s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [6.627s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.722s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.713s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.087s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.134s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [13.254s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [3.006s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [9.074s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.491s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [10.119s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.424s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [6.895s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [5.322s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [8.004s]
[INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [7.284s]
[INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [8.903s]
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2:56.225s
[INFO] Finished at: Tue Feb 19 09:00:17 UTC 2013
[INFO] Final Memory: 36M/159M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
mavenExecutionResult exceptions not empty
message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-temporal: Compilation failure
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/SystemTemporalRelationPrinter.java>:[80,4]
cannot find symbol
symbol  : constructor EvaluationOfTemporalRelations(java.io.File,java.io.File,java.io.File,java.io.File)
location: class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations

cause : Compilation failure
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/SystemTemporalRelationPrinter.java>:[80,4]
cannot find symbol
symbol  : constructor EvaluationOfTemporalRelations(java.io.File,java.io.File,java.io.File,java.io.File)
location: class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations

Stack trace : 
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile
(default-compile) on project ctakes-temporal: Compilation failure
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/SystemTemporalRelationPrinter.java>:[80,4]
cannot find symbol
symbol  : constructor EvaluationOfTemporalRelations(java.io.File,java.io.File,java.io.File,java.io.File)
location: class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations

	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
	at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
	at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:100)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:66)
	at hudson.remoting.UserRequest.perform(UserRequest.java:118)
	at hudson.remoting.UserRequest.perform(UserRequest.java:48)
	at hudson.remoting.Request$2.run(Request.java:326)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:662)
Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure
<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-temporal/src/main/java/org/apache/ctakes/temporal/eval/SystemTemporalRelationPrinter.java>:[80,4]
cannot find symbol
symbol  : constructor EvaluationOfTemporalRelations(java.io.File,java.io.File,java.io.File,java.io.File)
location: class org.apache.ctakes.temporal.eval.EvaluationOfTemporalRelations

	at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:678)
	at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128)
	at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
	... 27 more
Sending e-mails to: ctakes-notifications@incubator.apache.org timothy.miller@childrens.harvard.edu
channel stopped

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