Return-Path: X-Original-To: apmail-incubator-ctakes-notifications-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-notifications-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 334A1E553 for ; Mon, 7 Jan 2013 23:55:27 +0000 (UTC) Received: (qmail 93711 invoked by uid 500); 7 Jan 2013 23:55:27 -0000 Delivered-To: apmail-incubator-ctakes-notifications-archive@incubator.apache.org Received: (qmail 93691 invoked by uid 500); 7 Jan 2013 23:55:27 -0000 Mailing-List: contact ctakes-notifications-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@incubator.apache.org Delivered-To: mailing list ctakes-notifications@incubator.apache.org Received: (qmail 93681 invoked by uid 99); 7 Jan 2013 23:55:27 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 07 Jan 2013 23:55:27 +0000 X-ASF-Spam-Status: No, hits=-2000.0 required=5.0 tests=ALL_TRUSTED X-Spam-Check-By: apache.org Received: from [140.211.11.8] (HELO aegis.apache.org) (140.211.11.8) by apache.org (qpsmtpd/0.29) with ESMTP; Mon, 07 Jan 2013 23:55:22 +0000 Received: from aegis.apache.org (localhost [127.0.0.1]) by aegis.apache.org (Postfix) with ESMTP id E5246C002D; Mon, 7 Jan 2013 23:55:00 +0000 (UTC) Date: Mon, 7 Jan 2013 23:53:44 +0000 (UTC) From: Apache Jenkins Server To: ctakes-notifications@incubator.apache.org, tmill@apache.org Message-ID: <346539916.22.1357602900936.JavaMail.hudson@aegis> Subject: Build failed in Jenkins: ctakes-trunk-compiletest #99 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable X-Jenkins-Job: ctakes-trunk-compiletest X-Jenkins-Result: FAILURE X-Virus-Checked: Checked by ClamAV on apache.org See Changes: [tmill] ctakes-111: Adds tree-based features for use in tree-kernel svms. [tmill] ctakes-117: Adds features for doing mention similarity using statis= tics from wiki articles. Additional features multiply other features together in meaningful ways: (shared cui X entity type) e.g., two mentions of "liver" is probably the sa= me because a person only has one liver. two mentions of "pain" are less likely to be = the same. This feature captures that intuition by having type-specific synonym featur= es. ------------------------------------------ [...truncated 2322 lines...] [INFO]=20 [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ct= akes-assertion --- mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-te= stCompile) mojoStarted org.apache.maven.plugins:maven-surefire-plugin:2.12(default-tes= t) [INFO] [INFO] Surefire report directory: [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-assertio= n --- ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 mojoSucceeded org.apache.maven.plugins:maven-surefire-plugin:2.12(default-t= est) [JENKINS] Recording test results projectSucceeded org.apache.ctakes:ctakes-assertion:3.1.0-incubating-SNAPSH= OT projectStarted org.apache.ctakes:ctakes-clinical-pipeline:3.1.0-incubating-= SNAPSHOT [INFO] = =20 [INFO] --------------------------------------------------------------------= ---- [INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.1.0-incubating-SNA= PSHOT [INFO] --------------------------------------------------------------------= ---- mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean= )[INFO] Deleting [INFO]=20 [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical= -pipeline --- mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-cle= an) mojoStarted org.apache.maven.plugins:maven-remote-resources-plugin:1.3(defa= ult) [INFO]=20 [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-cli= nical-pipeline --- mojoSucceeded org.apache.maven.plugins:maven-remote-resources-plugin:1.3(de= fault) mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-res= ources)[debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO]=20 [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctake= s-clinical-pipeline --- mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-r= esources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-comp= ile) [INFO]=20 [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-cli= nical-pipeline --- [INFO] Compiling 1 source file to [WARNING] :[167,17] [unchecked] unchecked call to add(E) as = a member of the raw type java.util.Set mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-co= mpile) mojoStarted org.apache.maven.plugins:maven-remote-resources-plugin:1.3(defa= ult) [INFO]=20 [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-cli= nical-pipeline --- mojoSucceeded org.apache.maven.plugins:maven-remote-resources-plugin:1.3(de= fault) [debug] execute contextualize mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-res= ources)[INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO]=20 [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctake= s-clinical-pipeline --- mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-r= esources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-comp= ile) [INFO] [INFO] Nothing to compile - all classes are up to date [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-cli= nical-pipeline --- mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-co= mpile) [debug] execute contextualize mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-tes= tResources)[INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO]=20 [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources)= @ ctakes-clinical-pipeline --- mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-t= estResources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-test= Compile)[INFO] No sources to compile [INFO]=20 [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ct= akes-clinical-pipeline --- mojoSucceeded org.apache.maven.plugins:maven-compiler-plugin:2.4(default-te= stCompile) mojoStarted org.apache.maven.plugins:maven-surefire-plugin:2.12(default-tes= t) [INFO] [INFO] Surefire report directory: [INFO] --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-clinical= -pipeline --- ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 mojoSucceeded org.apache.maven.plugins:maven-surefire-plugin:2.12(default-t= est) [JENKINS] Recording test results projectSucceeded org.apache.ctakes:ctakes-clinical-pipeline:3.1.0-incubatin= g-SNAPSHOT projectStarted org.apache.ctakes:ctakes-relation-extractor:3.1.0-incubating= -SNAPSHOT [INFO] = =20 [INFO] --------------------------------------------------------------------= ---- [INFO] Building Apache cTAKES Relation Extractor 3.1.0-incubating-SNAPSHOT [INFO] --------------------------------------------------------------------= ---- mojoStarted org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-clean= )[INFO] Deleting [INFO]=20 [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-relation= -extractor --- mojoSucceeded org.apache.maven.plugins:maven-clean-plugin:2.4.1(default-cle= an) mojoStarted org.apache.maven.plugins:maven-remote-resources-plugin:1.3(defa= ult) [INFO]=20 [INFO] --- maven-remote-resources-plugin:1.3:process (default) @ ctakes-rel= ation-extractor --- mojoSucceeded org.apache.maven.plugins:maven-remote-resources-plugin:1.3(de= fault) [debug] execute contextualize mojoStarted org.apache.maven.plugins:maven-resources-plugin:2.5(default-res= ources)[INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO]=20 [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctake= s-relation-extractor --- [INFO] Copying 22 resources [INFO] Copying 3 resources mojoSucceeded org.apache.maven.plugins:maven-resources-plugin:2.5(default-r= esources) mojoStarted org.apache.maven.plugins:maven-compiler-plugin:2.4(default-comp= ile) [INFO]=20 [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-rel= ation-extractor --- [INFO] Compiling 45 source files to [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR :=20 [INFO] ------------------------------------------------------------- [ERROR] :[26,40] cannot find symbol symbol : method getCommonAncestor(org.apache.ctakes.typesystem.type.syntax= .TreebankNode,org.apache.ctakes.typesystem.type.syntax.TreebankNode) location: class org.apache.ctakes.constituency.parser.util.AnnotationTreeUt= ils [INFO] 1 error [INFO] ------------------------------------------------------------- mojoFailed org.apache.maven.plugins:maven-compiler-plugin:2.4(default-compi= le) projectFailed org.apache.ctakes:ctakes-relation-extractor:3.1.0-incubating-= SNAPSHOT sessionEnded [INFO] --------------------------------------------------------------------= ---- [INFO] Reactor Summary: [INFO]=20 [INFO] Apache cTAKES ..................................... SUCCESS [4.507s] [INFO] Apache cTAKES common type system .................. SUCCESS [7.922s] [INFO] Apache cTAKES utils ............................... SUCCESS [3.306s] [INFO] Apache cTAKES core ................................ SUCCESS [8.977s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.161s] [INFO] Apache cTAKES chunker ............................. SUCCESS [2.565s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.445s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [9.384s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.460s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [1.688s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [2.932s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.224s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [8.396s] [INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.609s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [6.552s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [3.940s] [INFO] Apache cTAKES Relation Extractor .................. FAILURE [3.152s] [INFO] Apache cTAKES CoReference Resolver ................ SKIPPED [INFO] Apache cTAKES Drug NER ............................ SKIPPED [INFO] Apache cTAKES Side Effects ........................ SKIPPED [INFO] Apache cTAKES Smoking Status ...................... SKIPPED [INFO] Apache cTAKES Pad Term Spotter .................... SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] --------------------------------------------------------------------= ---- [INFO] BUILD FAILURE [INFO] --------------------------------------------------------------------= ---- [INFO] Total time: 1:19.094s [INFO] Finished at: Mon Jan 07 23:52:24 UTC 2013 [INFO] Final Memory: 31M/135M [INFO] --------------------------------------------------------------------= ---- Projects to build: [MavenProject: org.apache.ctakes:ctakes:3.1.0-incubating= -SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-type-system:3.1.0-incubating-S= NAPSHOT @ MavenProject: org.apache.ctakes:ctakes-utils:3.1.0-i= ncubating-SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-core:3.1= .0-incubating-SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-pos-t= agger:3.1.0-incubating-SNAPSHOT @ MavenProject: org.apache.ctak= es:ctakes-chunker:3.1.0-incubating-SNAPSHOT @ MavenProject: org.ap= ache.ctakes:ctakes-preprocessor:3.1.0-incubating-SNAPSHOT @ M= avenProject: org.apache.ctakes:ctakes-dictionary-lookup:3.1.0-incubating-SN= APSHOT @ MavenProject: org.apache.ctakes:ctakes-context-= tokenizer:3.1.0-incubating-SNAPSHOT @ MavenProject: org.= apache.ctakes:ctakes-lvg:3.1.0-incubating-SNAPSHOT @ MavenProject: org= .apache.ctakes:ctakes-ne-contexts:3.1.0-incubating-SNAPSHOT @ = MavenProject: org.apache.ctakes:ctakes-constituency-parser:3.1.0-incubating= -SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-dep= endency-parser:3.1.0-incubating-SNAPSHOT @ MavenProject:= org.apache.ctakes:ctakes-assertion-zoner:3.1.0-incubating-SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-assertion:3.1.0-incubati= ng-SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-clinical-pi= peline:3.1.0-incubating-SNAPSHOT @ MavenProject: org.apa= che.ctakes:ctakes-relation-extractor:3.1.0-incubating-SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-coreference:3.1.0-incubati= ng-SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-drug-ner:= 3.1.0-incubating-SNAPSHOT @ MavenProject: org.apache.ctakes:ctake= s-side-effect:3.1.0-incubating-SNAPSHOT @ MavenProject: org.ap= ache.ctakes:ctakes-smoking-status:3.1.0-incubating-SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-pad-term-spotter:3.1.0-incubating= -SNAPSHOT @ MavenProject: org.apache.ctakes:ctakes-tempor= al:3.1.0-incubating-SNAPSHOT @ MavenProject: org.apache.ctakes:ct= akes-distribution:3.1.0-incubating-SNAPSHOT @ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-pl= ugin:2.4:compile (default-compile) on project ctakes-relation-extractor: Co= mpilation failure :[26,40] cannot find symbol symbol : method getCommonAncestor(org.apache.ctakes.typesystem.type.syntax= .TreebankNode,org.apache.ctakes.typesystem.type.syntax.TreebankNode) location: class org.apache.ctakes.constituency.parser.util.AnnotationTreeUt= ils cause : Compilation failure :[26,40] cannot find symbol symbol : method getCommonAncestor(org.apache.ctakes.typesystem.type.syntax= .TreebankNode,org.apache.ctakes.typesystem.type.syntax.TreebankNode) location: class org.apache.ctakes.constituency.parser.util.AnnotationTreeUt= ils Stack trace :=20 org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute g= oal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-com= pile) on project ctakes-relation-extractor: Compilation failure :[26,40] cannot find symbol symbol : method getCommonAncestor(org.apache.ctakes.typesystem.type.syntax= .TreebankNode,org.apache.ctakes.typesystem.type.syntax.TreebankNode) location: class org.apache.ctakes.constituency.parser.util.AnnotationTreeUt= ils =09at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor= .java:213) =09at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor= .java:153) =09at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor= .java:145) =09at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProje= ct(LifecycleModuleBuilder.java:84) =09at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProje= ct(LifecycleModuleBuilder.java:59) =09at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBu= ild(LifecycleStarter.java:183) =09at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(Lifecycl= eStarter.java:161) =09at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320) =09at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) =09at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.j= ava:79) =09at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) =09at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.= java:39) =09at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces= sorImpl.java:25) =09at java.lang.reflect.Method.invoke(Method.java:597) =09at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Laun= cher.java:329) =09at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.jav= a:239) =09at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) =09at hudson.maven.Maven3Builder.call(Maven3Builder.java:100) =09at hudson.maven.Maven3Builder.call(Maven3Builder.java:66) =09at hudson.remoting.UserRequest.perform(UserRequest.java:118) =09at hudson.remoting.UserRequest.perform(UserRequest.java:48) =09at hudson.remoting.Request$2.run(Request.java:326) =09at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecut= orService.java:72) =09at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) =09at java.util.concurrent.FutureTask.run(FutureTask.java:138) =09at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExec= utor.java:886) =09at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor= .java:908) =09at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation= failure :[26,40] cannot find symbol symbol : method getCommonAncestor(org.apache.ctakes.typesystem.type.syntax= .TreebankNode,org.apache.ctakes.typesystem.type.syntax.TreebankNode) location: class org.apache.ctakes.constituency.parser.util.AnnotationTreeUt= ils =09at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompiler= Mojo.java:678) =09at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) =09at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(Default= BuildPluginManager.java:101) =09at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor= .java:209) =09... 27 more Sending e-mails to: ctakes-notifications@incubator.apache.org tmill@apache.= org channel stopped