Return-Path: X-Original-To: apmail-incubator-ctakes-dev-archive@minotaur.apache.org Delivered-To: apmail-incubator-ctakes-dev-archive@minotaur.apache.org Received: from mail.apache.org (hermes.apache.org [140.211.11.3]) by minotaur.apache.org (Postfix) with SMTP id 67E35EF46 for ; Thu, 7 Feb 2013 14:53:29 +0000 (UTC) Received: (qmail 89082 invoked by uid 500); 7 Feb 2013 14:53:29 -0000 Delivered-To: apmail-incubator-ctakes-dev-archive@incubator.apache.org Received: (qmail 89012 invoked by uid 500); 7 Feb 2013 14:53:28 -0000 Mailing-List: contact ctakes-dev-help@incubator.apache.org; run by ezmlm Precedence: bulk List-Help: List-Unsubscribe: List-Post: List-Id: Reply-To: ctakes-dev@incubator.apache.org Delivered-To: mailing list ctakes-dev@incubator.apache.org Received: (qmail 88951 invoked by uid 99); 7 Feb 2013 14:53:28 -0000 Received: from nike.apache.org (HELO nike.apache.org) (192.87.106.230) by apache.org (qpsmtpd/0.29) with ESMTP; Thu, 07 Feb 2013 14:53:28 +0000 X-ASF-Spam-Status: No, hits=-0.0 required=5.0 tests=SPF_PASS X-Spam-Check-By: apache.org Received-SPF: pass (nike.apache.org: domain of Pei.Chen@childrens.harvard.edu designates 134.174.20.73 as permitted sender) Received: from [134.174.20.73] (HELO mailsmtp3.childrenshospital.org) (134.174.20.73) by apache.org (qpsmtpd/0.29) with ESMTP; Thu, 07 Feb 2013 14:53:20 +0000 Received: from pps.filterd (mailsmtp3.childrenshospital.org [127.0.0.1]) by mailsmtp3.childrenshospital.org (8.14.5/8.14.5) with SMTP id r17EmkR1016146 for ; Thu, 7 Feb 2013 09:52:48 -0500 Received: from smtpndc2.chboston.org (smtpndc2.chboston.org [10.20.50.105]) by mailsmtp3.childrenshospital.org with ESMTP id 1abrkg3vtf-1 (version=TLSv1/SSLv3 cipher=AES256-SHA bits=256 verify=NOT) for ; Thu, 07 Feb 2013 09:52:48 -0500 Received: from pps.filterd (smtpndc2.chboston.org [127.0.0.1]) by smtpndc2.chboston.org (8.14.5/8.14.5) with SMTP id r17EoApY003600 for ; Thu, 7 Feb 2013 09:52:48 -0500 Received: from chexhubcasbdc2.chboston.org (chexhubcasbdc2.chboston.org [10.20.18.93]) by smtpndc2.chboston.org with ESMTP id 1a392sbnhs-1 (version=TLSv1/SSLv3 cipher=AES128-SHA bits=128 verify=NOT) for ; Thu, 07 Feb 2013 09:52:48 -0500 Received: from CHEXMBX1A.CHBOSTON.ORG ([fe80::3c05:8ca9:55a6:f320]) by CHEXHUBCASBDC2.CHBOSTON.ORG ([::1]) with mapi id 14.02.0309.002; Thu, 7 Feb 2013 09:52:48 -0500 From: "Chen, Pei" To: "" CC: "ctakes-dev@incubator.apache.org" Subject: Re: Concepts arenot detected Thread-Topic: Concepts arenot detected Thread-Index: AQHOBR6b5UelVUZmsk+ZzaCzSa/DRphue1mB Date: Thu, 7 Feb 2013 14:52:47 +0000 Message-ID: References: In-Reply-To: Accept-Language: en-US Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.9.8327,1.0.431,0.0.0000 definitions=2013-02-07_06:2013-02-07,2013-02-07,1970-01-01 signatures=0 X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10432:5.9.8327,1.0.431,0.0.0000 definitions=2013-02-07_06:2013-02-07,2013-02-07,1970-01-01 signatures=0 X-Virus-Checked: Checked by ClamAV on apache.org Hi Shady, Could you also provide the full qualified classname of the Concept object? = The dictionary lookup annotator normally populates IdentifiedAnnotation.on= tologyConceptArr[].UmlsConcept Just making sure its not a medfacts Concept which is used internally by the= assertion module.=20 Sent from my iPhone On Feb 7, 2013, at 5:33 AM, "Shady Hussein" wrote: > Hi, > Some concepts are not detected by cTAKES. I want to understand if the > problem is in the UMLS dictionary or it is something else. In my opinion > they are very basic things. >=20 > Consider the following example >=20 > VITAL SIGNS : > Temperature 97.5 , heart rate 90 , blood pressure 104/80 , respiratory ra= te > 18 . >=20 > Here Temperature, blood pressure and respiratory rate arenot annotated as > Concept. Is there a way to annotate them or enhance the dictionary lookup= ? >=20 > --=20 > Thanks and best Regards, >=20 > Shady AbdelAziz