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From: "Bleeker, Troy C." <Bleeker.Troy@mayo.edu>
To: "'ctakes-dev@incubator.apache.org'" <ctakes-dev@incubator.apache.org>
Subject: RE: User running CPE error
Thread-Topic: User running CPE error
Thread-Index: Ac4L04m75P7wEWvcQAq9bA07WieMCAADzOBIAIHpeNAACc5LYA==
Date: Mon, 18 Feb 2013 21:19:45 +0000
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Wait, I see now. If I load test_plaintext.xml then I will get the error I r=
eported. If I load test1.xml then I don't. So CPE (on Windows) remembers th=
e last CPE descriptor to be loaded (even if I delete my entire cTAKES insta=
ll and do it again). On a clean system that won't be true so we can ignore =
that given that the documentation now points to an XML file that will load.

However even though it "loads into CPE", it does not run. I can load up thi=
s:
<cTAKES_HOME>/desc/ctakes-clinical-pipeline/desc/collection_processing_engi=
ne/test1.xml
but when I click the play button to run the processing I get the attached e=
rror. I'm not sure what the input data location and output location should =
be.

Thanks
Troy

-----Original Message-----
From: Bleeker, Troy C.=20
Sent: Monday, February 18, 2013 9:18 AM
To: ctakes-dev@incubator.apache.org
Subject: RE: User running CPE error

Sorry. I should have been more specific. Those XML files are not involved y=
et.

After obtaining the binary files and merging in the resources I run the com=
mand runctakesCPE.bat and I get the error in the attached picture.
<cTAKES_HOME>/desc/ctakes-clinical-pipeline/ctakes-core/collection-reader/F=
ilesInDirectoryCollectionReader.xml
does not exist.

Thanks
Troy
-----Original Message-----
From: ctakes-dev-return-1226-Bleeker.Troy=3Dmayo.edu@incubator.apache.org [=
mailto:ctakes-dev-return-1226-Bleeker.Troy=3Dmayo.edu@incubator.apache.org]=
 On Behalf Of Chen, Pei
Sent: Friday, February 15, 2013 7:14 PM
To: ctakes-dev@incubator.apache.org
Subject: RE: User running CPE error

Hi Troy,
I updated the documentation to use text1.xml instead of test_plaintext.xml =
for demo/sample purposes.
<cTAKES_HOME>/desc/ctakes-clinical-pipeline/desc/collection_processing_engi=
ne/test1.xml

--Pei

________________________________________
From: Bleeker, Troy C. [Bleeker.Troy@mayo.edu]
Sent: Friday, February 15, 2013 7:09 PM
To: ctakes-dev@incubator.apache.org
Subject: User running CPE error

Following the user instructions as they currently are (download bin from he=
re http://www.apache.org/dist/incubator/ctakes/) :
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.0+User+Guide

Gave me an error about a missing file when trying to  runctakesCPE.bat.
Can anyone else reproduce that?

Thanks
Troy Bleeker * Senior Business Analyst CBAP(r) * Biomedical Statistics and =
Informatics
Phone: 507-293-1574 * Fax: 507-284-0360 * bleeker.troy@mayo.edu Mayo Clinic=
 * 200 First Street SW * Rochester, MN 55905 * www.mayoclinic.org


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