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From "Bleeker, Troy C." <Bleeker.T...@mayo.edu>
Subject RE: cTAKES 3.0 maven compile issue
Date Fri, 18 Jan 2013 19:19:17 GMT
Let's see, so 46GB available on the drive that I put cTAKES on.
I used wget http://apache.mirrors.pair.com/maven/maven-3/3.0.4/binaries/apache-maven-3.0.4-bin.tar.gz
to download Maven before any of the checkouts or compiles so Internet access, check.
Command used was   
mvn clean compile package

Thanks
Troy
-----Original Message-----
From: ctakes-dev-return-1052-Bleeker.Troy=mayo.edu@incubator.apache.org [mailto:ctakes-dev-return-1052-Bleeker.Troy=mayo.edu@incubator.apache.org]
On Behalf Of Chen, Pei
Sent: Friday, January 18, 2013 12:00 PM
To: ctakes-dev@incubator.apache.org
Subject: RE: cTAKES 3.0 maven compile issue

Hi Troy,
Quite strange that it worked for you on Windows, but not on Ubuntu.
Did you try again with mvn clean compile?  Does the Ubuntu machine have access to the web
to download 3rd party libs?  Enough disk space in the target directory?

--Pei

> -----Original Message-----
> From: Bleeker, Troy C. [mailto:Bleeker.Troy@mayo.edu]
> Sent: Friday, January 18, 2013 12:35 PM
> To: ctakes-dev@incubator.apache.org
> Subject: cTAKES 3.0 maven compile issue
> 
> On Windows and Eclipse my checkout gabbed everything necessary, 
> compiled , and I could run the GUIs.
> 
> On Ubuntu Linux I checked out OK, but I get this error at this time.
> 
> [INFO] Apache cTAKES ..................................... FAILURE 
> [2.701s] [INFO] Apache cTAKES common type system .................. 
> SKIPPED [INFO] Apache cTAKES utils ............................... 
> SKIPPED [INFO] Apache cTAKES core ................................ 
> SKIPPED [INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED [INFO] Apache
cTAKES chunker .............................
> SKIPPED [INFO] Apache cTAKES document preprocessor ............... 
> SKIPPED [INFO] Apache cTAKES dictionary lookup ................... 
> SKIPPED [INFO] Apache cTAKES context dependent tokenizer ......... 
> SKIPPED [INFO] Apache cTAKES LVG lexical tools ................... 
> SKIPPED [INFO] Apache cTAKES named entity contexts ............... 
> SKIPPED [INFO] Apache cTAKES Constituency Parser ................. 
> SKIPPED [INFO] Apache cTAKES Dependency Parser ................... SKIPPED [INFO] Apache
cTAKES Assertion's zoner ...................
> SKIPPED [INFO] Apache cTAKES Assertion ........................... 
> SKIPPED [INFO] Apache cTAKES ctakes-clinical-pipeline ............ 
> SKIPPED [INFO] Apache cTAKES Relation Extractor .................. 
> SKIPPED [INFO] Apache cTAKES CoReference Resolver ................ 
> SKIPPED [INFO] Apache cTAKES Drug NER ............................ 
> SKIPPED [INFO] Apache cTAKES Side Effects ........................ 
> SKIPPED [INFO] Apache cTAKES Smoking Status ...................... 
> SKIPPED [INFO] Apache cTAKES Pad Term Spotter .................... 
> SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED [INFO] Apache
cTAKES Distribution ........................
> SKIPPED [INFO] 
> ----------------------------------------------------------------------
> --
> [INFO] BUILD FAILURE
> [INFO] 
> ----------------------------------------------------------------------
> --
> [INFO] Total time: 5.264s
> [INFO] Finished at: Fri Jan 18 17:17:16 UTC 2013 [INFO] Final Memory:
> 11M/59M [INFO] 
> ----------------------------------------------------------------------
> -- [ERROR] Failed to execute goal 
> org.apache.maven.plugins:maven-remote-
> resources-plugin:1.3:process (default) on project ctakes: Error 
> finding remote resources manifests: 
> /vol1/cTAKES-3.0/target/maven-shared-
> archive-resources/META-INF/NOTICE (No such file or directory) -> [Help 
> 1]
> org.apache.maven.lifecycle.LifecycleExecutionException: Failed to 
> execute goal 
> org.apache.maven.plugins:maven-remote-resources-plugin:1.3:process
> (default) on project ctakes: Error finding remote resources manifests
>         at
> org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.
> ja
> va:217)
>         at
> org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.
> ja
> va:153)
>         at
> org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.
> ja
> va:145)
>         at
> org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProjec
> t(Life
> cycleModuleBuilder.java:84)
>         at
> org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProjec
> t(Life
> cycleModuleBuilder.java:59)
>         at
> org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBui
> ld(Lif
> ecycleStarter.java:183)
>         at
> org.apache.maven.lifecycle.internal.LifecycleStarter.execute(Lifecycle
> Starter
> .java:161)
>         at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
>         at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
>         at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
>         at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
>         at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.j
> ava:57)
>         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAcces
> sorImpl.java:43)
>         at java.lang.reflect.Method.invoke(Method.java:616)
>         at
> org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launc
> h
> er.java:290)
>         at
> org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java
> :23
> 0)
>         at
> org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Lau
> n
> cher.java:409)
>         at
> org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:3
> 52
> )
> Caused by: org.apache.maven.plugin.MojoExecutionException: Error 
> finding remote resources manifests
>         at
> org.apache.maven.plugin.resources.remote.ProcessRemoteResourcesMojo.
> processResourceBundles(ProcessRemoteResourcesMojo.java:1220)
>         at
> org.apache.maven.plugin.resources.remote.ProcessRemoteResourcesMojo.
> execute(ProcessRemoteResourcesMojo.java:518)
>         at
> org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(Default
> BuildPluginManager.java:101)
>         at
> org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.
> ja
> va:209)
>         ... 19 more
> Caused by: java.io.FileNotFoundException: 
> /vol1/cTAKES-3.0/target/maven- shared-archive-resources/META-INF/NOTICE (No such file
or directory)
>         at java.io.FileOutputStream.open(Native Method)
>         at java.io.FileOutputStream.<init>(FileOutputStream.java:209)
>         at java.io.FileOutputStream.<init>(FileOutputStream.java:160)
>         at java.io.FileWriter.<init>(FileWriter.java:90)
>         at
> org.apache.maven.plugin.resources.remote.ProcessRemoteResourcesMojo.
> processResourceBundles(ProcessRemoteResourcesMojo.java:1128)
> 
> Thanks
> Troy Bleeker * Senior Business Analyst CBAP(r) * Biomedical Statistics 
> and Informatics
> Phone: 507-293-1574 * Fax: 507-284-0360 * bleeker.troy@mayo.edu Mayo 
> Clinic * 200 First Street SW * Rochester, MN 55905 * www.mayoclinic.org


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